Wall clock time and date at job start Mon Mar 30 2020 00:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.38474 * 119.82201 * 90.00138 * 14 13 12 16 16 C 1.37841 * 120.22238 * 179.97438 * 15 14 13 17 17 C 1.39711 * 119.87312 * 0.02562 * 16 15 14 18 18 C 1.47563 * 120.17368 * 179.97438 * 17 16 15 19 19 O 1.21488 * 120.00443 * 180.02562 * 18 17 16 20 20 O 1.34735 * 119.99570 * 0.02562 * 18 17 16 21 21 C 1.39884 * 119.65754 * 0.02562 * 17 16 15 22 22 F 1.35094 * 120.11149 * 179.97438 * 21 17 16 23 23 C 1.38204 * 119.82662 * 269.73119 * 14 13 12 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 29 29 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 30 30 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 31 31 H 1.08001 * 119.89076 * 359.97438 * 15 14 13 32 32 H 1.07996 * 120.05975 * 180.02562 * 16 15 14 33 33 H 0.96701 * 116.99700 * 179.97438 * 20 18 17 34 34 H 1.08001 * 119.93335 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 1.6916 -1.1517 -4.4017 16 6 2.1453 -1.8341 -5.5101 17 6 3.5149 -1.8900 -5.7803 18 6 4.0080 -2.6191 -6.9647 19 8 5.1997 -2.6662 -7.1965 20 8 3.1366 -3.2327 -7.7890 21 6 4.4165 -1.2521 -4.9218 22 9 5.7427 -1.3008 -5.1741 23 6 3.9448 -0.5659 -3.8175 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 1.4495 -1.4978 -1.4102 29 1 1.0871 0.6165 -2.5525 30 1 2.7588 1.0464 -2.1181 31 1 0.6329 -1.1087 -4.1923 32 1 1.4435 -2.3245 -6.1682 33 1 3.5068 -3.6974 -8.5520 34 1 4.6380 -0.0677 -3.1558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:22 Heat of formation + Delta-G solvation = -113.479147 kcal Electronic energy + Delta-G solvation = -19386.413362 eV Core-core repulsion = 16005.495457 eV Total energy + Delta-G solvation = -3380.917904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.94434 -40.43243 -38.99053 -36.27319 -36.05606 -33.15079 -31.53592 -30.69997 -28.54622 -25.66558 -25.12270 -23.16473 -22.69561 -21.05469 -20.29248 -18.34120 -17.71728 -16.90574 -16.46032 -16.12074 -16.10264 -15.28120 -14.95083 -14.78411 -14.49674 -14.05212 -13.59237 -13.48454 -13.07664 -12.68306 -12.36576 -11.94685 -11.81374 -11.74128 -11.66511 -11.30440 -10.96804 -10.82611 -10.72257 -10.52835 -10.22942 -9.97886 -9.17439 -9.05712 -8.87245 -8.41619 -7.39943 -6.04055 -4.07589 0.42810 1.08510 2.34605 2.74475 3.30191 3.36924 3.41500 3.47904 4.00982 4.40338 4.50007 4.69160 4.82716 5.11161 5.16671 5.27983 5.39433 5.58782 5.64077 5.84843 5.93382 6.00797 6.09186 6.22654 6.45842 6.58756 6.66868 6.74850 6.98348 7.22922 7.65618 7.66695 7.80485 8.17062 8.39049 8.49911 8.99508 9.58131 11.02946 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.003688 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.939981 B = 7590.043631 C = 7956.456926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.676 5.676 13 C 0.086 3.914 14 C 0.004 3.996 15 C -0.143 4.143 16 C -0.033 4.033 17 C -0.182 4.182 18 C 0.528 3.472 19 O -0.507 6.507 20 O -0.512 6.512 21 C 0.165 3.835 22 F -0.118 7.118 23 C -0.148 4.148 24 H 0.090 0.910 25 H 0.005 0.995 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.414 0.586 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -3.829 -17.499 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.306 5.306 13 C -0.043 4.043 14 C 0.003 3.997 15 C -0.162 4.162 16 C -0.051 4.051 17 C -0.184 4.184 18 C 0.373 3.627 19 O -0.396 6.396 20 O -0.324 6.324 21 C 0.145 3.855 22 F -0.096 7.096 23 C -0.167 4.167 24 H 0.109 0.891 25 H 0.024 0.976 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.272 0.728 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.187 -3.421 -16.903 17.286 hybrid contribution -0.231 -0.666 0.120 0.715 sum 0.955 -4.087 -16.783 17.300 Atomic orbital electron populations 1.22448 1.00533 0.99329 1.00636 1.19229 0.89730 0.94534 0.86136 0.94619 1.21133 1.30412 1.12550 0.89468 0.91853 1.24946 0.95281 0.95163 0.99080 1.69875 1.37257 1.23113 1.23463 0.86493 0.79292 0.79238 0.82358 1.20812 1.19823 1.21345 1.60938 1.58445 1.08732 1.02515 1.21063 0.99416 0.95453 0.88387 1.20277 0.92179 0.92709 0.94520 1.21182 1.00707 0.99296 0.94984 1.21273 0.92992 0.94756 0.96102 1.18986 0.94757 1.07714 0.96928 1.20629 0.83709 0.76221 0.82166 1.90948 1.17152 1.58512 1.72955 1.84544 1.43100 1.65359 1.39421 1.17689 0.77434 0.96268 0.94094 1.91585 1.30403 1.94036 1.93559 1.21091 0.96835 1.02063 0.96716 0.89115 0.97557 0.95222 0.92996 0.85507 0.94307 0.90036 0.84506 0.83743 0.72760 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 8.94 37.16 0.33 -3.50 16 2 C 0.21 4.98 2.57 -68.87 -0.18 4.81 16 3 H 0.04 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.50 -13.28 8.84 -34.44 -0.30 -13.59 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -13.13 6.22 -109.22 -0.68 -13.81 16 13 C 0.09 1.34 5.60 -4.97 -0.03 1.31 16 14 C 0.00 0.05 5.40 -104.55 -0.56 -0.51 16 15 C -0.14 -1.61 9.67 -39.64 -0.38 -2.00 16 16 C -0.03 -0.35 9.61 -39.18 -0.38 -0.73 16 17 C -0.18 -2.30 5.88 -104.93 -0.62 -2.92 16 18 C 0.53 6.55 8.27 34.53 0.29 6.84 16 19 O -0.51 -7.86 16.13 -19.26 -0.31 -8.17 16 20 O -0.51 -4.33 12.68 -40.59 -0.51 -4.85 16 21 C 0.17 2.32 7.29 -38.94 -0.28 2.04 16 22 F -0.12 -1.84 15.55 2.25 0.04 -1.81 16 23 C -0.15 -2.02 9.66 -39.57 -0.38 -2.40 16 24 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 25 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 26 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.33 6.04 8.46 -39.29 -0.33 5.71 16 29 H 0.04 0.58 7.38 -51.93 -0.38 0.20 16 30 H 0.08 1.29 7.99 -51.93 -0.42 0.88 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.18 7.61 -52.49 -0.40 0.78 16 33 H 0.41 1.60 9.11 45.56 0.42 2.01 16 34 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -30.75 302.04 -6.94 -37.68 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.03 Total: 3.88 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.59 Total: -9.22 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.05 Total: -38.14 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.83 Total: -13.01 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.75 -6.94 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.794 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds