Wall clock time and date at job start Mon Mar 30 2020 00:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.38474 * 119.82201 * 90.00138 * 14 13 12 16 16 C 1.37841 * 120.22238 * 179.97438 * 15 14 13 17 17 C 1.39711 * 119.87312 * 0.02562 * 16 15 14 18 18 C 1.47563 * 120.17368 * 179.97438 * 17 16 15 19 19 O 1.21488 * 120.00443 * 180.02562 * 18 17 16 20 20 O 1.34735 * 119.99570 * 0.02562 * 18 17 16 21 21 C 1.39884 * 119.65754 * 0.02562 * 17 16 15 22 22 F 1.35094 * 120.11149 * 179.97438 * 21 17 16 23 23 C 1.38204 * 119.82662 * 269.73119 * 14 13 12 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 29 29 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 30 30 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 31 31 H 1.08001 * 119.89076 * 359.97438 * 15 14 13 32 32 H 1.07996 * 120.05975 * 180.02562 * 16 15 14 33 33 H 0.96701 * 116.99700 * 179.97438 * 20 18 17 34 34 H 1.08001 * 119.93335 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 1.6916 -1.1517 -4.4017 16 6 2.1453 -1.8341 -5.5101 17 6 3.5149 -1.8900 -5.7803 18 6 4.0080 -2.6191 -6.9647 19 8 5.1997 -2.6662 -7.1965 20 8 3.1366 -3.2327 -7.7890 21 6 4.4165 -1.2521 -4.9218 22 9 5.7427 -1.3008 -5.1741 23 6 3.9448 -0.5659 -3.8175 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 1.4495 -1.4978 -1.4102 29 1 1.0871 0.6165 -2.5525 30 1 2.7588 1.0464 -2.1181 31 1 0.6329 -1.1087 -4.1923 32 1 1.4435 -2.3245 -6.1682 33 1 3.5068 -3.6974 -8.5520 34 1 4.6380 -0.0677 -3.1558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:21 Heat of formation + Delta-G solvation = -134.147964 kcal Electronic energy + Delta-G solvation = -19387.309629 eV Core-core repulsion = 16005.495457 eV Total energy + Delta-G solvation = -3381.814172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05820 -41.36433 -40.00775 -37.66476 -37.11481 -34.81007 -32.97951 -31.70826 -30.07691 -27.24941 -26.80642 -24.19989 -23.74213 -22.20386 -21.97674 -19.22830 -18.80513 -18.33436 -17.73270 -17.35004 -17.12022 -16.74358 -16.31274 -16.15830 -15.58218 -15.37484 -14.92689 -14.73741 -14.22837 -14.14785 -13.69017 -13.36397 -13.18518 -12.99136 -12.82399 -12.63720 -12.61325 -12.50941 -12.20854 -12.12038 -11.88947 -11.63681 -11.02376 -10.46159 -10.16792 -9.87121 -8.96376 -8.08163 -6.18498 -0.56823 0.12446 1.38236 1.44053 1.45915 1.55994 1.92108 2.44091 2.51824 3.00134 3.20847 3.48484 3.64962 3.92897 3.98204 4.17198 4.23899 4.42170 4.64959 4.74550 4.85948 4.93261 4.94240 4.98829 5.06191 5.14136 5.40235 5.47955 5.50016 5.68764 5.73283 5.85357 6.29706 6.63494 6.82676 6.90155 6.96441 7.51494 8.96885 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.003688 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.939981 B = 7590.043631 C = 7956.456926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.683 5.683 13 C 0.091 3.909 14 C -0.005 4.005 15 C -0.131 4.131 16 C -0.016 4.016 17 C -0.187 4.187 18 C 0.535 3.465 19 O -0.545 6.545 20 O -0.495 6.495 21 C 0.142 3.858 22 F -0.134 7.134 23 C -0.154 4.154 24 H 0.060 0.940 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.336 0.664 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.436 0.564 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -4.972 -18.776 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.313 5.313 13 C -0.037 4.037 14 C -0.006 4.006 15 C -0.150 4.150 16 C -0.034 4.034 17 C -0.189 4.189 18 C 0.380 3.620 19 O -0.437 6.437 20 O -0.309 6.309 21 C 0.123 3.877 22 F -0.112 7.112 23 C -0.173 4.173 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.154 0.846 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.196 0.804 33 H 0.298 0.702 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.165 -4.585 -18.218 18.787 hybrid contribution 0.149 -0.332 0.405 0.544 sum -0.016 -4.917 -17.813 18.479 Atomic orbital electron populations 1.22243 0.99541 0.99480 1.00429 1.18962 0.90353 0.92867 0.87097 0.97504 1.21463 1.30347 1.12435 0.91144 0.92886 1.25647 0.95531 0.95844 1.01699 1.69994 1.38061 1.24127 1.23937 0.85589 0.78747 0.78277 0.79176 1.20107 1.19799 1.21123 1.60712 1.58391 1.09430 1.02788 1.20986 1.00062 0.94813 0.87881 1.20074 0.92269 0.93812 0.94431 1.21448 1.01547 0.97762 0.94194 1.21591 0.92334 0.93589 0.95859 1.19215 0.95513 1.07315 0.96837 1.20574 0.83343 0.75812 0.82253 1.90941 1.18847 1.60020 1.73931 1.84483 1.41913 1.64709 1.39801 1.17886 0.77142 0.97658 0.95044 1.91539 1.31608 1.94332 1.93755 1.21066 0.97181 1.02268 0.96774 0.92160 0.94829 0.94752 0.93036 0.84632 0.92886 0.91085 0.81930 0.80401 0.70189 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.96 8.94 71.98 0.64 -6.31 16 2 C 0.22 10.19 2.57 44.17 0.11 10.31 16 3 H 0.01 0.37 7.80 -2.39 -0.02 0.35 16 4 C -0.52 -27.71 8.84 25.60 0.23 -27.48 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -51.66 11.32 21.45 0.24 -51.41 16 8 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.68 -25.99 6.22 -499.46 -3.11 -29.10 16 13 C 0.09 2.75 5.60 85.56 0.48 3.23 16 14 C -0.01 -0.13 5.40 -19.82 -0.11 -0.23 16 15 C -0.13 -2.50 9.67 22.23 0.22 -2.29 16 16 C -0.02 -0.28 9.61 22.53 0.22 -0.06 16 17 C -0.19 -4.37 5.88 -20.06 -0.12 -4.49 16 18 C 0.53 12.25 8.27 70.28 0.58 12.83 16 19 O -0.55 -16.58 16.13 19.87 0.32 -16.26 16 20 O -0.50 -6.70 12.68 -56.45 -0.72 -7.41 16 21 C 0.14 3.97 7.29 22.69 0.17 4.14 16 22 F -0.13 -4.31 15.55 44.97 0.70 -3.61 16 23 C -0.15 -4.17 9.66 22.28 0.22 -3.95 16 24 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 25 H 0.03 1.25 7.45 -2.38 -0.02 1.24 16 26 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 27 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 28 H 0.34 11.81 8.46 -89.69 -0.76 11.06 16 29 H 0.05 1.46 7.38 -2.39 -0.02 1.44 16 30 H 0.07 2.27 7.99 -2.39 -0.02 2.25 16 31 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.18 1.96 7.61 -2.91 -0.02 1.93 16 33 H 0.44 1.92 9.11 -74.06 -0.67 1.25 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -66.76 302.04 2.26 -64.50 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -0.28 Total: 11.25 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 3.08 Total: -13.27 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -2.86 Total: -80.51 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.40 Total: -23.67 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.70 Total: -3.61 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.76 2.26 -64.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.648 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds