Wall clock time and date at job start Mon Mar 30 2020 00:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46783 * 2 1 4 4 C 1.50692 * 109.47232 * 119.99942 * 2 1 3 5 5 H 1.07997 * 119.99875 * 120.00327 * 4 2 1 6 6 C 1.37884 * 120.00269 * 299.99914 * 4 2 1 7 7 N 1.31520 * 119.99704 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47065 * 60.00334 * 8 6 4 10 10 H 1.48498 * 109.47043 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47240 * 300.00286 * 8 6 4 12 12 N 1.46895 * 109.47026 * 240.00493 * 2 1 3 13 13 C 1.46895 * 111.00421 * 84.99456 * 12 2 1 14 14 H 1.08992 * 109.47259 * 325.00070 * 13 12 2 15 15 C 1.50700 * 109.47048 * 84.99975 * 13 12 2 16 16 O 1.20826 * 120.00162 * 0.27562 * 15 13 12 17 17 O 1.34234 * 120.00068 * 179.97438 * 15 13 12 18 18 C 1.50702 * 109.47354 * 204.99748 * 13 12 2 19 19 C 1.38221 * 120.01376 * 339.72775 * 18 13 12 20 20 C 1.38221 * 120.02781 * 179.71679 * 19 18 13 21 21 C 1.38274 * 120.04676 * 0.55836 * 20 19 18 22 22 C 1.38171 * 120.02425 * 359.71755 * 21 20 19 23 23 C 1.38438 * 120.01271 * 159.99765 * 18 13 12 24 24 F 1.35100 * 120.02621 * 0.03008 * 23 18 13 25 25 H 1.09000 * 109.47511 * 299.99883 * 1 2 3 26 26 H 1.08997 * 109.47465 * 60.00172 * 1 2 3 27 27 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99690 * 179.97438 * 7 6 4 29 29 H 1.00907 * 110.99904 * 321.03821 * 12 2 1 30 30 H 0.96706 * 116.99872 * 179.97438 * 17 15 13 31 31 H 1.08004 * 119.98511 * 359.97438 * 19 18 13 32 32 H 1.07996 * 119.97289 * 180.27474 * 20 19 18 33 33 H 1.08003 * 119.98246 * 179.74107 * 21 20 19 34 34 H 1.08002 * 120.00748 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8282 -2.5198 4.0082 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 1 1.2575 0.9329 -2.2907 15 6 3.3910 0.9696 -2.3228 16 8 4.1916 0.7575 -1.4431 17 8 3.6698 1.8663 -3.2820 18 6 1.9785 -0.5675 -3.6259 19 6 2.2654 -1.9197 -3.6285 20 6 2.1647 -2.6459 -4.8002 21 6 1.7880 -2.0185 -5.9734 22 6 1.5062 -0.6658 -5.9744 23 6 1.6012 0.0616 -4.7999 24 9 1.3264 1.3844 -4.7999 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 4.5215 2.3207 -3.2241 31 1 2.5645 -2.4097 -2.7136 32 1 2.3848 -3.7032 -4.8002 33 1 1.7136 -2.5861 -6.8892 34 1 1.2116 -0.1761 -6.8908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:12 Heat of formation + Delta-G solvation = -99.750559 kcal Electronic energy + Delta-G solvation = -20550.091105 eV Core-core repulsion = 17169.768517 eV Total energy + Delta-G solvation = -3380.322588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74988 -40.03986 -38.79114 -36.32928 -35.31528 -33.19875 -31.16954 -30.54383 -28.34045 -26.01567 -25.08080 -22.65529 -22.59063 -20.73217 -19.95390 -17.82686 -17.45074 -16.58315 -16.33222 -16.16043 -15.69047 -15.18807 -14.90018 -14.64777 -14.18835 -14.02099 -13.55858 -13.02324 -12.95389 -12.58875 -12.25846 -12.14042 -11.75485 -11.57424 -11.12531 -10.96817 -10.88042 -10.77011 -10.59564 -10.19117 -10.09409 -9.88322 -9.09064 -8.94118 -8.61859 -8.33892 -7.52448 -5.96582 -3.98727 1.09212 1.20481 2.77673 3.33102 3.37731 3.41157 3.45418 3.68126 4.28727 4.45583 4.61688 4.72510 4.90516 5.07648 5.25603 5.35694 5.44028 5.62699 5.78148 5.85040 6.06358 6.08916 6.35358 6.38281 6.60767 6.75654 6.86148 6.94755 6.99156 7.17841 7.66650 7.83664 8.17319 8.34636 8.45145 8.54472 9.05989 9.65256 11.11221 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.005602 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.452504 B = 4997.412558 C = 5282.793335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.034 0.966 4 C -0.488 4.488 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.660 5.660 13 C 0.143 3.857 14 H 0.086 0.914 15 C 0.478 3.522 16 O -0.471 6.471 17 O -0.523 6.523 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.162 4.162 23 C 0.120 3.880 24 F -0.129 7.129 25 H 0.093 0.907 26 H 0.005 0.995 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.341 0.659 30 H 0.402 0.598 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -3.202 -17.024 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.107 3.893 3 H 0.052 0.948 4 C -0.527 4.527 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.294 5.294 13 C 0.031 3.969 14 H 0.103 0.897 15 C 0.316 3.684 16 O -0.354 6.354 17 O -0.335 6.335 18 C -0.124 4.124 19 C -0.088 4.088 20 C -0.153 4.153 21 C -0.110 4.110 22 C -0.181 4.181 23 C 0.100 3.900 24 F -0.108 7.108 25 H 0.112 0.888 26 H 0.024 0.976 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.259 0.741 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.957 -3.224 -16.449 16.790 hybrid contribution -0.156 0.354 0.706 0.805 sum 0.801 -2.870 -15.744 16.023 Atomic orbital electron populations 1.22488 1.00333 0.99565 1.00793 1.19257 0.89517 0.94562 0.85917 0.94794 1.20990 1.30041 1.12458 0.89190 0.91791 1.24933 0.95340 0.95231 0.99055 1.69867 1.37363 1.23217 1.23491 0.86518 0.79264 0.79464 0.81877 1.20259 1.21501 1.20361 1.60554 1.58845 1.08260 1.01709 1.19605 0.92320 0.94847 0.90173 0.89681 1.23318 0.89182 0.77336 0.78583 1.90752 1.47781 1.62011 1.34888 1.84568 1.43523 1.53456 1.51969 1.19809 1.03944 0.95358 0.93336 1.21186 0.95798 0.92340 0.99512 1.21223 1.01166 1.00459 0.92450 1.21021 0.97801 0.93606 0.98530 1.21078 1.04836 0.95152 0.97045 1.17542 1.00177 0.78154 0.94136 1.91524 1.90858 1.31231 1.97140 0.88828 0.97587 0.94934 0.93003 0.83795 0.74068 0.83312 0.85193 0.85234 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.43 2.22 -68.87 -0.15 5.27 16 3 H 0.03 0.97 7.64 -51.93 -0.40 0.58 16 4 C -0.49 -13.68 8.84 -34.44 -0.30 -13.99 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.54 5.30 -17.81 -0.09 1.45 16 7 N -0.90 -26.06 11.32 55.43 0.63 -25.43 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.66 -13.90 4.87 -103.41 -0.50 -14.40 16 13 C 0.14 2.67 2.28 -70.02 -0.16 2.51 16 14 H 0.09 1.65 6.92 -51.93 -0.36 1.29 16 15 C 0.48 9.29 7.36 36.01 0.27 9.55 16 16 O -0.47 -10.98 17.03 -18.75 -0.32 -11.30 16 17 O -0.52 -8.09 12.39 -39.27 -0.49 -8.58 16 18 C -0.12 -1.90 4.96 -104.55 -0.52 -2.42 16 19 C -0.07 -0.95 8.87 -39.59 -0.35 -1.31 16 20 C -0.13 -1.45 10.05 -39.57 -0.40 -1.84 16 21 C -0.09 -0.90 10.04 -39.59 -0.40 -1.29 16 22 C -0.16 -1.83 10.03 -39.52 -0.40 -2.22 16 23 C 0.12 1.71 6.98 -39.42 -0.28 1.43 16 24 F -0.13 -1.98 15.96 2.25 0.04 -1.95 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.01 0.11 7.43 -51.93 -0.39 -0.27 16 27 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.34 6.48 6.73 -39.29 -0.26 6.21 16 30 H 0.40 4.37 9.10 45.56 0.41 4.79 16 31 H 0.15 2.08 6.72 -52.48 -0.35 1.73 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -32.59 297.29 -6.53 -39.12 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -2.89 Total: 7.78 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.45 Total: -6.62 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.12 Total: -39.83 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.81 Total: -19.88 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.59 -6.53 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.634 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds