Wall clock time and date at job start Mon Mar 30 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46783 * 2 1 4 4 C 1.50692 * 109.47232 * 119.99942 * 2 1 3 5 5 H 1.07997 * 119.99875 * 120.00327 * 4 2 1 6 6 C 1.37884 * 120.00269 * 299.99914 * 4 2 1 7 7 N 1.31520 * 119.99704 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47065 * 60.00334 * 8 6 4 10 10 H 1.48498 * 109.47043 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47240 * 300.00286 * 8 6 4 12 12 N 1.46895 * 109.47026 * 240.00493 * 2 1 3 13 13 C 1.46895 * 111.00421 * 84.99456 * 12 2 1 14 14 H 1.08992 * 109.47259 * 325.00070 * 13 12 2 15 15 C 1.50700 * 109.47048 * 84.99975 * 13 12 2 16 16 O 1.20826 * 120.00162 * 0.27562 * 15 13 12 17 17 O 1.34234 * 120.00068 * 179.97438 * 15 13 12 18 18 C 1.50702 * 109.47354 * 204.99748 * 13 12 2 19 19 C 1.38221 * 120.01376 * 339.72775 * 18 13 12 20 20 C 1.38221 * 120.02781 * 179.71679 * 19 18 13 21 21 C 1.38274 * 120.04676 * 0.55836 * 20 19 18 22 22 C 1.38171 * 120.02425 * 359.71755 * 21 20 19 23 23 C 1.38438 * 120.01271 * 159.99765 * 18 13 12 24 24 F 1.35100 * 120.02621 * 0.03008 * 23 18 13 25 25 H 1.09000 * 109.47511 * 299.99883 * 1 2 3 26 26 H 1.08997 * 109.47465 * 60.00172 * 1 2 3 27 27 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99690 * 179.97438 * 7 6 4 29 29 H 1.00907 * 110.99904 * 321.03821 * 12 2 1 30 30 H 0.96706 * 116.99872 * 179.97438 * 17 15 13 31 31 H 1.08004 * 119.98511 * 359.97438 * 19 18 13 32 32 H 1.07996 * 119.97289 * 180.27474 * 20 19 18 33 33 H 1.08003 * 119.98246 * 179.74107 * 21 20 19 34 34 H 1.08002 * 120.00748 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8282 -2.5198 4.0082 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 1 1.2575 0.9329 -2.2907 15 6 3.3910 0.9696 -2.3228 16 8 4.1916 0.7575 -1.4431 17 8 3.6698 1.8663 -3.2820 18 6 1.9785 -0.5675 -3.6259 19 6 2.2654 -1.9197 -3.6285 20 6 2.1647 -2.6459 -4.8002 21 6 1.7880 -2.0185 -5.9734 22 6 1.5062 -0.6658 -5.9744 23 6 1.6012 0.0616 -4.7999 24 9 1.3264 1.3844 -4.7999 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 4.5215 2.3207 -3.2241 31 1 2.5645 -2.4097 -2.7136 32 1 2.3848 -3.7032 -4.8002 33 1 1.7136 -2.5861 -6.8892 34 1 1.2116 -0.1761 -6.8908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:11 Heat of formation + Delta-G solvation = -122.141680 kcal Electronic energy + Delta-G solvation = -20551.062057 eV Core-core repulsion = 17169.768517 eV Total energy + Delta-G solvation = -3381.293540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.84136 -41.48752 -39.90233 -37.93629 -36.89121 -34.98869 -32.79882 -31.48019 -29.87375 -27.58292 -27.17585 -23.82101 -23.68522 -22.31243 -21.58197 -19.18560 -18.83141 -18.24411 -17.67470 -17.44675 -17.04158 -16.62839 -16.38099 -16.15680 -15.67768 -15.20382 -15.03167 -14.56448 -14.19249 -14.01474 -13.80745 -13.64526 -13.20821 -12.90582 -12.84276 -12.61193 -12.54877 -12.42389 -12.19802 -12.01691 -11.89987 -11.60078 -11.12400 -10.49557 -9.94138 -9.62203 -9.25940 -8.11187 -6.21201 0.11303 0.27609 1.24450 1.42128 1.45416 1.52572 2.01004 2.43667 2.68990 3.17840 3.26575 3.37586 3.47361 3.92438 4.02075 4.21663 4.37902 4.44365 4.49954 4.66385 4.80120 4.90106 4.97409 5.13904 5.18617 5.27503 5.41836 5.49192 5.60077 5.66385 5.74241 5.96205 6.18321 6.47649 6.61613 6.88758 7.06270 7.47040 8.95211 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.005602 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.452504 B = 4997.412558 C = 5282.793335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.222 3.778 3 H -0.008 1.008 4 C -0.509 4.509 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.963 3.037 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.265 1.265 12 N -0.661 5.661 13 C 0.144 3.856 14 H 0.073 0.927 15 C 0.482 3.518 16 O -0.520 6.520 17 O -0.509 6.509 18 C -0.144 4.144 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.076 4.076 22 C -0.156 4.156 23 C 0.099 3.901 24 F -0.143 7.143 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.261 0.739 29 H 0.352 0.648 30 H 0.423 0.577 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -4.980 -19.212 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.114 3.886 3 H 0.010 0.990 4 C -0.547 4.547 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.190 1.190 12 N -0.295 5.295 13 C 0.032 3.968 14 H 0.091 0.909 15 C 0.323 3.677 16 O -0.407 6.407 17 O -0.322 6.322 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.174 4.174 23 C 0.079 3.921 24 F -0.121 7.121 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.174 0.826 30 H 0.284 0.716 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.826 -4.995 -18.681 19.355 hybrid contribution -0.088 0.922 1.224 1.535 sum 0.738 -4.073 -17.457 17.941 Atomic orbital electron populations 1.22273 0.99183 1.00023 1.00319 1.18941 0.90226 0.92292 0.87113 0.99032 1.21300 1.30217 1.12512 0.90713 0.92581 1.25730 0.95475 0.95935 1.01959 1.70003 1.38111 1.24290 1.24084 0.85530 0.78318 0.78947 0.78307 1.20541 1.20879 1.18967 1.60311 1.58799 1.08789 1.01614 1.19519 0.91471 0.94678 0.91160 0.90927 1.23526 0.89002 0.77125 0.78064 1.90727 1.49445 1.63757 1.36812 1.84516 1.45004 1.52448 1.50247 1.19603 1.06895 0.95965 0.92112 1.21204 0.96763 0.91777 1.00573 1.21583 0.99469 1.01754 0.91475 1.21528 0.95073 0.93056 0.99662 1.21450 1.03505 0.95773 0.96674 1.17807 1.01493 0.77929 0.94876 1.91485 1.91173 1.32234 1.97237 0.91584 0.95643 0.93853 0.92980 0.82566 0.71644 0.84501 0.82141 0.80985 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.92 71.98 0.64 -7.05 16 2 C 0.22 11.68 2.22 44.17 0.10 11.78 16 3 H -0.01 -0.50 7.64 -2.39 -0.02 -0.52 16 4 C -0.51 -29.30 8.84 25.60 0.23 -29.07 16 5 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 6 C 0.01 0.39 5.30 84.66 0.45 0.84 16 7 N -0.92 -54.86 11.32 21.45 0.24 -54.62 16 8 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.66 -28.73 4.87 -481.07 -2.34 -31.07 16 13 C 0.14 5.54 2.28 43.42 0.10 5.64 16 14 H 0.07 2.94 6.92 -2.39 -0.02 2.93 16 15 C 0.48 19.37 7.36 71.24 0.52 19.89 16 16 O -0.52 -25.27 17.03 21.96 0.37 -24.89 16 17 O -0.51 -15.79 12.39 -51.46 -0.64 -16.42 16 18 C -0.14 -4.40 4.96 -19.82 -0.10 -4.50 16 19 C -0.08 -2.20 8.87 22.26 0.20 -2.00 16 20 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 21 C -0.08 -1.12 10.04 22.26 0.22 -0.89 16 22 C -0.16 -2.95 10.03 22.31 0.22 -2.73 16 23 C 0.10 2.67 6.98 22.37 0.16 2.83 16 24 F -0.14 -4.31 15.96 44.97 0.72 -3.59 16 25 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 26 H 0.02 1.08 7.43 -2.39 -0.02 1.07 16 27 H 0.04 1.95 8.13 -2.39 -0.02 1.93 16 28 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.35 13.64 6.73 -89.69 -0.60 13.04 16 30 H 0.42 9.04 9.10 -74.05 -0.67 8.37 16 31 H 0.14 3.81 6.72 -2.91 -0.02 3.79 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -73.08 297.29 3.22 -69.86 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -0.13 Total: 20.54 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 2.97 Total: -7.26 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.10 Total: -85.69 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.26 Total: -41.32 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.72 Total: -3.59 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -73.08 3.22 -69.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.284 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds