Wall clock time and date at job start Mon Mar 30 2020 00:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47323 * 2 1 4 4 C 1.50702 * 109.46947 * 240.00687 * 2 1 3 5 5 H 1.08000 * 119.99633 * 245.45618 * 4 2 1 6 6 C 1.37875 * 120.00353 * 65.45799 * 4 2 1 7 7 N 1.31516 * 119.99747 * 9.54873 * 6 4 2 8 8 Si 1.86796 * 119.99835 * 189.55285 * 6 4 2 9 9 H 1.48500 * 109.47189 * 84.99472 * 8 6 4 10 10 H 1.48504 * 109.47014 * 204.99178 * 8 6 4 11 11 H 1.48497 * 109.47367 * 324.99225 * 8 6 4 12 12 N 1.46897 * 109.47559 * 120.00349 * 2 1 3 13 13 C 1.46903 * 110.99976 * 274.99937 * 12 2 1 14 14 H 1.09001 * 109.46955 * 34.99813 * 13 12 2 15 15 C 1.50703 * 109.47305 * 274.99807 * 13 12 2 16 16 O 1.20827 * 119.99698 * 359.97438 * 15 13 12 17 17 O 1.34223 * 119.99959 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47215 * 154.99826 * 13 12 2 19 19 C 1.38226 * 120.01115 * 24.99951 * 18 13 12 20 20 C 1.38217 * 120.02230 * 179.97438 * 19 18 13 21 21 C 1.38267 * 120.05570 * 0.02562 * 20 19 18 22 22 C 1.38178 * 120.02253 * 0.02562 * 21 20 19 23 23 C 1.38440 * 120.01528 * 204.72296 * 18 13 12 24 24 F 1.35105 * 120.02148 * 0.02562 * 23 18 13 25 25 H 1.08999 * 109.46995 * 183.67754 * 1 2 3 26 26 H 1.09010 * 109.46939 * 303.67254 * 1 2 3 27 27 H 1.08991 * 109.47770 * 63.67428 * 1 2 3 28 28 H 0.97002 * 119.99531 * 180.02562 * 7 6 4 29 29 H 1.00899 * 110.99827 * 38.95096 * 12 2 1 30 30 H 0.96705 * 116.99694 * 180.02562 * 17 15 13 31 31 H 1.08001 * 119.98433 * 359.95686 * 19 18 13 32 32 H 1.08006 * 119.97430 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.98821 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.00867 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5785 -1.6369 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2989 1.0357 -2.5935 8 14 2.1760 -1.1777 -4.0102 9 1 1.0241 -2.0608 -4.3242 10 1 2.4226 -0.2610 -5.1522 11 1 3.3846 -2.0068 -3.7711 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.3912 0.9694 2.3227 16 8 4.1898 0.7605 1.4404 17 8 3.6696 1.8667 3.2814 18 6 1.9788 -0.5678 3.6258 19 6 2.3589 -1.8965 3.6503 20 6 2.2643 -2.6214 4.8233 21 6 1.7890 -2.0187 5.9734 22 6 1.4074 -0.6909 5.9510 23 6 1.5081 0.0383 4.7781 24 9 1.1410 1.3383 4.7565 25 1 -0.3633 -1.0255 0.0659 26 1 -0.3633 0.5698 0.8553 27 1 -0.3634 0.4557 -0.9210 28 1 1.1313 1.4106 -3.4723 29 1 1.4496 -1.4979 1.4099 30 1 4.5213 2.3210 3.2234 31 1 2.7297 -2.3684 2.7524 32 1 2.5620 -3.6595 4.8416 33 1 1.7151 -2.5863 6.8893 34 1 1.0357 -0.2205 6.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:15 Heat of formation + Delta-G solvation = -101.868436 kcal Electronic energy + Delta-G solvation = -20536.283463 eV Core-core repulsion = 17155.869036 eV Total energy + Delta-G solvation = -3380.414426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.77260 -40.02910 -38.78487 -36.32389 -35.30097 -33.16219 -31.20718 -30.54247 -28.41478 -26.02442 -25.04370 -22.69736 -22.57823 -20.75010 -19.96416 -17.81381 -17.45489 -16.59802 -16.35749 -16.13837 -15.67624 -15.21123 -14.89535 -14.61833 -14.16514 -14.03039 -13.55011 -13.00779 -12.98340 -12.58778 -12.27399 -12.13987 -11.84647 -11.58182 -11.17323 -10.98775 -10.94212 -10.79797 -10.56025 -10.24111 -10.10662 -9.83097 -9.12386 -8.94519 -8.62838 -8.30792 -7.54490 -5.98163 -3.96651 1.08832 1.20067 2.79347 3.33869 3.36139 3.42058 3.46449 3.67463 4.28023 4.46411 4.61412 4.72439 4.90195 5.08413 5.25335 5.34795 5.43035 5.62677 5.79153 5.85097 6.05828 6.08380 6.35306 6.38004 6.54493 6.67072 6.85814 6.91279 6.97483 7.14618 7.51781 7.84993 8.12037 8.33616 8.45754 8.55361 9.07246 9.65621 11.11926 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.005617 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.610570 B = 4983.785817 C = 5275.207313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.212 3.788 3 H 0.042 0.958 4 C -0.490 4.490 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.658 5.658 13 C 0.143 3.857 14 H 0.085 0.915 15 C 0.477 3.523 16 O -0.469 6.469 17 O -0.525 6.525 18 C -0.123 4.123 19 C -0.069 4.069 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.162 4.162 23 C 0.120 3.880 24 F -0.131 7.131 25 H 0.033 0.967 26 H 0.010 0.990 27 H 0.075 0.925 28 H 0.260 0.740 29 H 0.340 0.660 30 H 0.402 0.598 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -3.627 17.147 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.105 3.895 3 H 0.060 0.940 4 C -0.529 4.529 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.292 5.292 13 C 0.031 3.969 14 H 0.103 0.897 15 C 0.315 3.685 16 O -0.352 6.352 17 O -0.336 6.336 18 C -0.124 4.124 19 C -0.087 4.087 20 C -0.153 4.153 21 C -0.109 4.109 22 C -0.181 4.181 23 C 0.100 3.900 24 F -0.109 7.109 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.161 0.839 30 H 0.260 0.740 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.393 -3.630 16.575 16.972 hybrid contribution -0.320 0.313 -0.746 0.870 sum 0.073 -3.317 15.829 16.173 Atomic orbital electron populations 1.22433 1.00742 0.98853 1.00541 1.19289 0.89050 0.95174 0.85992 0.94035 1.20965 1.34448 1.08217 0.89250 0.91770 1.24926 0.95638 0.94757 0.99028 1.69969 1.45822 1.14040 1.23714 0.86539 0.78640 0.79954 0.82442 1.20750 1.21495 1.19889 1.60549 1.58781 1.08187 1.01669 1.19620 0.92368 0.94830 0.90119 0.89729 1.23303 0.89169 0.77386 0.78616 1.90760 1.47828 1.62020 1.34621 1.84554 1.43549 1.53435 1.52108 1.19810 1.03329 0.95681 0.93593 1.21188 0.95911 0.92378 0.99267 1.21224 1.00965 1.00500 0.92615 1.21021 0.97431 0.93853 0.98636 1.21078 1.04561 0.95380 0.97061 1.17544 0.99297 0.78860 0.94328 1.91520 1.88861 1.33472 1.97054 0.94768 0.97088 0.90569 0.93050 0.83911 0.74044 0.83333 0.85202 0.85229 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.03 37.15 0.34 -3.52 16 2 C 0.21 5.34 2.08 -68.87 -0.14 5.20 16 3 H 0.04 1.20 7.58 -51.93 -0.39 0.80 16 4 C -0.49 -13.72 8.76 -34.44 -0.30 -14.02 16 5 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 6 C 0.06 1.62 5.17 -17.82 -0.09 1.53 16 7 N -0.90 -26.27 12.16 55.43 0.67 -25.60 16 8 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.66 -13.81 4.83 -103.40 -0.50 -14.31 16 13 C 0.14 2.67 2.32 -70.01 -0.16 2.50 16 14 H 0.09 1.64 6.80 -51.93 -0.35 1.28 16 15 C 0.48 9.33 7.36 36.01 0.27 9.60 16 16 O -0.47 -11.02 17.02 -18.75 -0.32 -11.34 16 17 O -0.52 -8.18 13.21 -39.24 -0.52 -8.69 16 18 C -0.12 -1.89 4.86 -104.55 -0.51 -2.40 16 19 C -0.07 -0.94 8.86 -39.59 -0.35 -1.29 16 20 C -0.13 -1.44 10.04 -39.58 -0.40 -1.83 16 21 C -0.09 -0.89 10.04 -39.59 -0.40 -1.29 16 22 C -0.16 -1.82 10.03 -39.52 -0.40 -2.21 16 23 C 0.12 1.70 7.18 -39.42 -0.28 1.42 16 24 F -0.13 -2.01 16.50 2.25 0.04 -1.97 16 25 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.01 0.22 7.47 -51.92 -0.39 -0.17 16 27 H 0.08 1.96 6.83 -51.93 -0.35 1.61 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.34 6.41 6.96 -39.29 -0.27 6.13 16 30 H 0.40 4.43 9.10 45.56 0.41 4.84 16 31 H 0.15 2.08 6.97 -52.49 -0.37 1.71 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -32.87 300.44 -6.50 -39.37 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.95 Total: 7.52 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.43 Total: -6.32 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.17 Total: -39.91 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.84 Total: -20.03 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.87 -6.50 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.501 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds