Wall clock time and date at job start Mon Mar 30 2020 00:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47323 * 2 1 4 4 C 1.50702 * 109.46947 * 240.00687 * 2 1 3 5 5 H 1.08000 * 119.99633 * 245.45618 * 4 2 1 6 6 C 1.37875 * 120.00353 * 65.45799 * 4 2 1 7 7 N 1.31516 * 119.99747 * 9.54873 * 6 4 2 8 8 Si 1.86796 * 119.99835 * 189.55285 * 6 4 2 9 9 H 1.48500 * 109.47189 * 84.99472 * 8 6 4 10 10 H 1.48504 * 109.47014 * 204.99178 * 8 6 4 11 11 H 1.48497 * 109.47367 * 324.99225 * 8 6 4 12 12 N 1.46897 * 109.47559 * 120.00349 * 2 1 3 13 13 C 1.46903 * 110.99976 * 274.99937 * 12 2 1 14 14 H 1.09001 * 109.46955 * 34.99813 * 13 12 2 15 15 C 1.50703 * 109.47305 * 274.99807 * 13 12 2 16 16 O 1.20827 * 119.99698 * 359.97438 * 15 13 12 17 17 O 1.34223 * 119.99959 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47215 * 154.99826 * 13 12 2 19 19 C 1.38226 * 120.01115 * 24.99951 * 18 13 12 20 20 C 1.38217 * 120.02230 * 179.97438 * 19 18 13 21 21 C 1.38267 * 120.05570 * 0.02562 * 20 19 18 22 22 C 1.38178 * 120.02253 * 0.02562 * 21 20 19 23 23 C 1.38440 * 120.01528 * 204.72296 * 18 13 12 24 24 F 1.35105 * 120.02148 * 0.02562 * 23 18 13 25 25 H 1.08999 * 109.46995 * 183.67754 * 1 2 3 26 26 H 1.09010 * 109.46939 * 303.67254 * 1 2 3 27 27 H 1.08991 * 109.47770 * 63.67428 * 1 2 3 28 28 H 0.97002 * 119.99531 * 180.02562 * 7 6 4 29 29 H 1.00899 * 110.99827 * 38.95096 * 12 2 1 30 30 H 0.96705 * 116.99694 * 180.02562 * 17 15 13 31 31 H 1.08001 * 119.98433 * 359.95686 * 19 18 13 32 32 H 1.08006 * 119.97430 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.98821 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.00867 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5785 -1.6369 -1.1340 6 6 1.7945 -0.1772 -2.4797 7 7 1.2989 1.0357 -2.5935 8 14 2.1760 -1.1777 -4.0102 9 1 1.0241 -2.0608 -4.3242 10 1 2.4226 -0.2610 -5.1522 11 1 3.3846 -2.0068 -3.7711 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.3912 0.9694 2.3227 16 8 4.1898 0.7605 1.4404 17 8 3.6696 1.8667 3.2814 18 6 1.9788 -0.5678 3.6258 19 6 2.3589 -1.8965 3.6503 20 6 2.2643 -2.6214 4.8233 21 6 1.7890 -2.0187 5.9734 22 6 1.4074 -0.6909 5.9510 23 6 1.5081 0.0383 4.7781 24 9 1.1410 1.3383 4.7565 25 1 -0.3633 -1.0255 0.0659 26 1 -0.3633 0.5698 0.8553 27 1 -0.3634 0.4557 -0.9210 28 1 1.1313 1.4106 -3.4723 29 1 1.4496 -1.4979 1.4099 30 1 4.5213 2.3210 3.2234 31 1 2.7297 -2.3684 2.7524 32 1 2.5620 -3.6595 4.8416 33 1 1.7151 -2.5863 6.8893 34 1 1.0357 -0.2205 6.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:14 Heat of formation + Delta-G solvation = -124.638553 kcal Electronic energy + Delta-G solvation = -20537.270849 eV Core-core repulsion = 17155.869036 eV Total energy + Delta-G solvation = -3381.401813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.86281 -41.48221 -39.89464 -37.92830 -36.88720 -34.95156 -32.84784 -31.47437 -29.93459 -27.57910 -27.13988 -23.83070 -23.69660 -22.33587 -21.58599 -19.17392 -18.83093 -18.25830 -17.69039 -17.45107 -17.01382 -16.60145 -16.40827 -16.14921 -15.66841 -15.19661 -15.02315 -14.56533 -14.17056 -14.02716 -13.81969 -13.73433 -13.21972 -13.04518 -12.80354 -12.60206 -12.52313 -12.45020 -12.25443 -12.00635 -11.88009 -11.58385 -11.15074 -10.47551 -9.94054 -9.62377 -9.27177 -8.13546 -6.19700 0.11396 0.27666 1.25105 1.42364 1.43657 1.53856 2.01294 2.44090 2.68661 3.17260 3.26827 3.37236 3.47906 3.92752 4.01667 4.22250 4.38018 4.44377 4.49845 4.64312 4.76179 4.90069 4.92819 5.13161 5.18343 5.25437 5.42141 5.49307 5.58806 5.60663 5.71944 5.96112 6.11916 6.48507 6.63810 6.89694 7.06656 7.47032 8.95793 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.005617 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.610570 B = 4983.785817 C = 5275.207313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.220 3.780 3 H -0.003 1.003 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.660 5.660 13 C 0.144 3.856 14 H 0.073 0.927 15 C 0.482 3.518 16 O -0.520 6.520 17 O -0.510 6.510 18 C -0.143 4.143 19 C -0.083 4.083 20 C -0.125 4.125 21 C -0.075 4.075 22 C -0.155 4.155 23 C 0.098 3.902 24 F -0.145 7.145 25 H 0.050 0.950 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.261 0.739 29 H 0.352 0.648 30 H 0.423 0.577 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -5.564 19.370 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.112 3.888 3 H 0.015 0.985 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.294 5.294 13 C 0.032 3.968 14 H 0.090 0.910 15 C 0.322 3.678 16 O -0.407 6.407 17 O -0.324 6.324 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.143 4.143 21 C -0.093 4.093 22 C -0.174 4.174 23 C 0.079 3.921 24 F -0.123 7.123 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.174 0.826 30 H 0.284 0.716 31 H 0.154 0.846 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.117 -5.562 18.842 19.646 hybrid contribution -0.195 0.928 -1.269 1.584 sum -0.078 -4.635 17.573 18.174 Atomic orbital electron populations 1.22224 0.99282 0.99870 0.99820 1.18972 0.89997 0.92730 0.87142 0.98547 1.21292 1.34521 1.08133 0.90764 0.92471 1.25738 0.95551 0.95661 1.02074 1.70097 1.46803 1.15432 1.24340 0.85521 0.78761 0.78503 0.78538 1.19299 1.21340 1.19702 1.60296 1.58781 1.08736 1.01569 1.19527 0.91425 0.94666 0.91150 0.90963 1.23546 0.89024 0.77153 0.78066 1.90735 1.49546 1.63799 1.36584 1.84502 1.45020 1.52436 1.50408 1.19591 1.06205 0.96316 0.92361 1.21196 0.96749 0.91886 1.00345 1.21582 0.99452 1.01650 0.91570 1.21528 0.94776 0.93237 0.99734 1.21449 1.03416 0.95889 0.96603 1.17814 1.00508 0.78699 0.95128 1.91481 1.89186 1.34491 1.97165 0.93080 0.95253 0.93378 0.93040 0.82604 0.71642 0.84588 0.82147 0.80974 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.23 9.03 71.98 0.65 -6.58 16 2 C 0.22 11.50 2.08 44.17 0.09 11.59 16 3 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 4 C -0.51 -29.24 8.76 25.60 0.22 -29.01 16 5 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 6 C 0.01 0.45 5.17 84.65 0.44 0.89 16 7 N -0.93 -55.87 12.16 21.45 0.26 -55.61 16 8 Si 0.96 45.37 29.55 68.60 2.03 47.40 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 N -0.66 -28.55 4.83 -481.03 -2.32 -30.87 16 13 C 0.14 5.55 2.32 43.42 0.10 5.65 16 14 H 0.07 2.93 6.80 -2.39 -0.02 2.91 16 15 C 0.48 19.48 7.36 71.24 0.52 20.00 16 16 O -0.52 -25.50 17.02 21.96 0.37 -25.12 16 17 O -0.51 -15.99 13.21 -51.35 -0.68 -16.67 16 18 C -0.14 -4.34 4.86 -19.82 -0.10 -4.44 16 19 C -0.08 -2.15 8.86 22.26 0.20 -1.95 16 20 C -0.12 -2.19 10.04 22.27 0.22 -1.97 16 21 C -0.08 -1.09 10.04 22.26 0.22 -0.87 16 22 C -0.16 -2.92 10.03 22.31 0.22 -2.69 16 23 C 0.10 2.65 7.18 22.37 0.16 2.81 16 24 F -0.14 -4.37 16.50 44.97 0.74 -3.63 16 25 H 0.05 2.19 8.07 -2.39 -0.02 2.17 16 26 H 0.03 1.23 7.47 -2.38 -0.02 1.22 16 27 H 0.05 2.54 6.83 -2.39 -0.02 2.52 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.35 13.47 6.96 -89.70 -0.62 12.84 16 30 H 0.42 9.20 9.10 -74.05 -0.67 8.53 16 31 H 0.14 3.78 6.97 -2.91 -0.02 3.76 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -74.03 300.44 3.22 -70.82 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.15 Total: 20.26 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 2.96 Total: -6.57 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -2.06 Total: -86.48 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.30 Total: -41.80 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.74 Total: -3.63 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.03 3.22 -70.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.819 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds