Wall clock time and date at job start Mon Mar 30 2020 00:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46889 * 2 1 4 4 C 1.50700 * 109.46558 * 240.00269 * 2 1 3 5 5 H 1.07998 * 119.99786 * 239.99492 * 4 2 1 6 6 C 1.37877 * 120.00253 * 60.00283 * 4 2 1 7 7 N 1.31514 * 119.99600 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00138 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47098 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47188 * 120.00089 * 8 6 4 11 11 H 1.48507 * 109.47145 * 239.99793 * 8 6 4 12 12 N 1.46901 * 109.46869 * 120.00455 * 2 1 3 13 13 C 1.46896 * 110.99913 * 274.99420 * 12 2 1 14 14 H 1.09002 * 109.47220 * 325.00418 * 13 12 2 15 15 C 1.50703 * 109.46997 * 85.00438 * 13 12 2 16 16 O 1.20824 * 119.99775 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00026 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47239 * 205.00362 * 13 12 2 19 19 C 1.38225 * 120.01131 * 339.72690 * 18 13 12 20 20 C 1.38220 * 120.02420 * 179.71821 * 19 18 13 21 21 C 1.38270 * 120.05092 * 0.55854 * 20 19 18 22 22 C 1.38169 * 120.02376 * 359.71979 * 21 20 19 23 23 C 1.38431 * 120.01389 * 160.00088 * 18 13 12 24 24 F 1.35103 * 120.02702 * 0.02765 * 23 18 13 25 25 H 1.09001 * 109.47051 * 59.99369 * 1 2 3 26 26 H 1.08994 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46581 * 299.99824 * 1 2 3 28 28 H 0.97002 * 119.99395 * 180.02562 * 7 6 4 29 29 H 1.00902 * 110.99781 * 151.04348 * 12 2 1 30 30 H 0.96696 * 116.99892 * 180.02562 * 17 15 13 31 31 H 1.08001 * 119.98449 * 0.02562 * 19 18 13 32 32 H 1.07999 * 119.97367 * 180.27474 * 20 19 18 33 33 H 1.08000 * 119.98911 * 179.73929 * 21 20 19 34 34 H 1.08011 * 120.01161 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 1 2.3650 1.2175 2.0030 15 6 0.7325 0.2856 3.0135 16 8 -0.1875 -0.3652 2.5777 17 8 0.5523 1.0642 4.0920 18 6 3.1067 -0.2778 3.3328 19 6 3.5020 -1.6021 3.3070 20 6 4.4455 -2.0599 4.2074 21 6 4.9866 -1.1966 5.1422 22 6 4.5887 0.1262 5.1736 23 6 3.6477 0.5873 4.2682 24 9 3.2576 1.8805 4.2983 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.7081 1.1610 -3.4843 29 1 2.9173 -1.1206 1.0286 30 1 -0.3310 1.0717 4.4853 31 1 3.0770 -2.2782 2.5799 32 1 4.7570 -3.0937 4.1836 33 1 5.7206 -1.5564 5.8480 34 1 5.0117 0.8004 5.9036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:21 Heat of formation + Delta-G solvation = -95.629413 kcal Electronic energy + Delta-G solvation = -20599.766009 eV Core-core repulsion = 17219.622127 eV Total energy + Delta-G solvation = -3380.143882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.73282 -40.09866 -38.79608 -36.29510 -35.24099 -33.25176 -31.13572 -30.52636 -28.31836 -26.20060 -24.98823 -22.66148 -22.53333 -20.75425 -19.56002 -17.92800 -17.46485 -16.67080 -16.38120 -16.21129 -15.77703 -15.21207 -15.04410 -14.63471 -14.08013 -13.90164 -13.52791 -13.10533 -12.89137 -12.62037 -12.48862 -12.15860 -11.72930 -11.41521 -11.09827 -11.02666 -10.78688 -10.73500 -10.40022 -10.15930 -10.04387 -9.62916 -8.94293 -8.79330 -8.61332 -8.46032 -7.57538 -6.04022 -4.11534 1.11078 1.22259 2.74130 3.28129 3.32967 3.36086 3.39620 3.69269 4.30115 4.38235 4.63031 4.73447 4.91893 5.08616 5.26235 5.28879 5.46389 5.66144 5.77642 5.86686 6.08004 6.10609 6.36976 6.40108 6.84691 6.88627 6.92483 7.24903 7.30772 7.46863 7.74784 7.87085 8.23085 8.26081 8.45170 8.52967 8.95653 9.54017 11.01996 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.005960 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.567000 B = 4697.092965 C = 5348.062925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.664 5.664 13 C 0.143 3.857 14 H 0.086 0.914 15 C 0.475 3.525 16 O -0.469 6.469 17 O -0.522 6.522 18 C -0.123 4.123 19 C -0.070 4.070 20 C -0.135 4.135 21 C -0.092 4.092 22 C -0.162 4.162 23 C 0.120 3.880 24 F -0.129 7.129 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.018 0.982 28 H 0.261 0.739 29 H 0.346 0.654 30 H 0.401 0.599 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -1.608 15.395 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.299 5.299 13 C 0.031 3.969 14 H 0.103 0.897 15 C 0.314 3.686 16 O -0.353 6.353 17 O -0.334 6.334 18 C -0.124 4.124 19 C -0.088 4.088 20 C -0.153 4.153 21 C -0.110 4.110 22 C -0.181 4.181 23 C 0.100 3.900 24 F -0.108 7.108 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.168 0.832 30 H 0.259 0.741 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.886 -1.885 15.084 16.301 hybrid contribution 0.315 0.418 -0.858 1.005 sum 6.201 -1.467 14.225 15.587 Atomic orbital electron populations 1.21848 0.96785 1.00032 0.99448 1.19326 0.93499 0.91978 0.84777 0.97960 1.21209 1.31711 1.12671 0.90216 0.92003 1.24911 0.94959 0.94990 0.99083 1.69926 1.36343 1.22844 1.23442 0.86434 0.78590 0.79555 0.82760 1.19712 1.20938 1.21093 1.60512 1.32541 1.32039 1.04847 1.19697 0.86769 0.98675 0.91756 0.89689 1.23281 0.91243 0.76285 0.77752 1.90710 1.43059 1.40638 1.60854 1.84573 1.39880 1.65005 1.43947 1.19811 0.99773 0.94751 0.98083 1.21175 0.95282 0.94181 0.98158 1.21218 0.97755 1.00303 0.96024 1.21015 0.99111 0.92535 0.98307 1.21078 0.99353 0.97353 1.00327 1.17539 0.96561 0.78926 0.96992 1.91524 1.89669 1.33928 1.95645 0.90826 0.94735 0.96351 0.92912 0.83218 0.74133 0.83356 0.85210 0.85243 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.01 37.16 0.30 -2.95 16 2 C 0.21 5.40 2.60 -68.86 -0.18 5.22 16 3 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 4 C -0.52 -14.18 8.59 -34.44 -0.30 -14.47 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.66 -14.10 5.12 -103.39 -0.53 -14.63 16 13 C 0.14 2.69 2.46 -70.02 -0.17 2.51 16 14 H 0.09 1.68 7.23 -51.93 -0.38 1.30 16 15 C 0.48 8.95 6.94 36.01 0.25 9.20 16 16 O -0.47 -10.21 13.78 -18.75 -0.26 -10.47 16 17 O -0.52 -7.89 12.39 -39.26 -0.49 -8.37 16 18 C -0.12 -1.92 4.96 -104.55 -0.52 -2.44 16 19 C -0.07 -0.96 8.87 -39.59 -0.35 -1.31 16 20 C -0.13 -1.48 10.04 -39.58 -0.40 -1.87 16 21 C -0.09 -0.92 10.04 -39.59 -0.40 -1.31 16 22 C -0.16 -1.86 10.03 -39.52 -0.40 -2.26 16 23 C 0.12 1.73 6.98 -39.42 -0.28 1.45 16 24 F -0.13 -2.01 15.96 2.25 0.04 -1.97 16 25 H 0.07 2.10 6.07 -51.93 -0.32 1.78 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.02 0.45 5.07 -51.93 -0.26 0.19 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.35 6.84 6.48 -39.29 -0.25 6.59 16 30 H 0.40 4.19 9.10 45.56 0.41 4.60 16 31 H 0.15 2.10 6.72 -52.49 -0.35 1.75 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -31.93 290.61 -6.54 -38.47 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -2.76 Total: 7.92 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.53 Total: -6.59 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.10 Total: -39.57 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.74 Total: -18.84 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.93 -6.54 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.160 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds