Wall clock time and date at job start Mon Mar 30 2020 00:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46889 * 2 1 4 4 C 1.50700 * 109.46558 * 240.00269 * 2 1 3 5 5 H 1.07998 * 119.99786 * 239.99492 * 4 2 1 6 6 C 1.37877 * 120.00253 * 60.00283 * 4 2 1 7 7 N 1.31514 * 119.99600 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00138 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47098 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47188 * 120.00089 * 8 6 4 11 11 H 1.48507 * 109.47145 * 239.99793 * 8 6 4 12 12 N 1.46901 * 109.46869 * 120.00455 * 2 1 3 13 13 C 1.46896 * 110.99913 * 274.99420 * 12 2 1 14 14 H 1.09002 * 109.47220 * 325.00418 * 13 12 2 15 15 C 1.50703 * 109.46997 * 85.00438 * 13 12 2 16 16 O 1.20824 * 119.99775 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00026 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47239 * 205.00362 * 13 12 2 19 19 C 1.38225 * 120.01131 * 339.72690 * 18 13 12 20 20 C 1.38220 * 120.02420 * 179.71821 * 19 18 13 21 21 C 1.38270 * 120.05092 * 0.55854 * 20 19 18 22 22 C 1.38169 * 120.02376 * 359.71979 * 21 20 19 23 23 C 1.38431 * 120.01389 * 160.00088 * 18 13 12 24 24 F 1.35103 * 120.02702 * 0.02765 * 23 18 13 25 25 H 1.09001 * 109.47051 * 59.99369 * 1 2 3 26 26 H 1.08994 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46581 * 299.99824 * 1 2 3 28 28 H 0.97002 * 119.99395 * 180.02562 * 7 6 4 29 29 H 1.00902 * 110.99781 * 151.04348 * 12 2 1 30 30 H 0.96696 * 116.99892 * 180.02562 * 17 15 13 31 31 H 1.08001 * 119.98449 * 0.02562 * 19 18 13 32 32 H 1.07999 * 119.97367 * 180.27474 * 20 19 18 33 33 H 1.08000 * 119.98911 * 179.73929 * 21 20 19 34 34 H 1.08011 * 120.01161 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8162 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 1 2.3650 1.2175 2.0030 15 6 0.7325 0.2856 3.0135 16 8 -0.1875 -0.3652 2.5777 17 8 0.5523 1.0642 4.0920 18 6 3.1067 -0.2778 3.3328 19 6 3.5020 -1.6021 3.3070 20 6 4.4455 -2.0599 4.2074 21 6 4.9866 -1.1966 5.1422 22 6 4.5887 0.1262 5.1736 23 6 3.6477 0.5873 4.2682 24 9 3.2576 1.8805 4.2983 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.7081 1.1610 -3.4843 29 1 2.9173 -1.1206 1.0286 30 1 -0.3310 1.0717 4.4853 31 1 3.0770 -2.2782 2.5799 32 1 4.7570 -3.0937 4.1836 33 1 5.7206 -1.5564 5.8480 34 1 5.0117 0.8004 5.9036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:21 Heat of formation + Delta-G solvation = -117.476710 kcal Electronic energy + Delta-G solvation = -20600.713379 eV Core-core repulsion = 17219.622127 eV Total energy + Delta-G solvation = -3381.091252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.84517 -41.53350 -39.89038 -37.89310 -36.79399 -35.03903 -32.77666 -31.48251 -29.92716 -27.87759 -27.02290 -23.75665 -23.68914 -22.31098 -21.29018 -19.28401 -18.87268 -18.31388 -17.77103 -17.53320 -17.05905 -16.61286 -16.40298 -16.14874 -15.56155 -15.29245 -14.98854 -14.53035 -14.31044 -14.05626 -14.00213 -13.40716 -13.22208 -12.91155 -12.76206 -12.66747 -12.50398 -12.30113 -12.09993 -11.99803 -11.88942 -11.42323 -10.87106 -10.57501 -9.93679 -9.62309 -9.37689 -8.15366 -6.30826 0.11449 0.27354 1.24599 1.41910 1.43467 1.55644 2.02147 2.40351 2.68722 3.12789 3.26838 3.37643 3.46864 3.91962 4.03697 4.22572 4.38472 4.44825 4.49815 4.77188 4.89056 5.11547 5.14047 5.15479 5.21521 5.32888 5.43459 5.49691 5.60205 5.62638 5.82825 5.95926 6.14753 6.28749 6.56616 6.88594 7.08458 7.39246 8.90923 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.005960 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.567000 B = 4697.092965 C = 5348.062925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.217 3.783 3 H -0.027 1.027 4 C -0.537 4.537 5 H 0.067 0.933 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.660 5.660 13 C 0.142 3.858 14 H 0.068 0.932 15 C 0.481 3.519 16 O -0.506 6.506 17 O -0.510 6.510 18 C -0.145 4.145 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.076 4.076 22 C -0.156 4.156 23 C 0.098 3.902 24 F -0.143 7.143 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.353 0.647 30 H 0.423 0.577 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -2.975 16.990 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 H -0.010 1.010 4 C -0.575 4.575 5 H 0.086 0.914 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.295 5.295 13 C 0.030 3.970 14 H 0.085 0.915 15 C 0.322 3.678 16 O -0.394 6.394 17 O -0.323 6.323 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.094 4.094 22 C -0.174 4.174 23 C 0.078 3.922 24 F -0.122 7.122 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.176 0.824 30 H 0.284 0.716 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.990 -3.244 16.724 18.817 hybrid contribution -0.303 0.865 -1.196 1.506 sum 7.687 -2.380 15.528 17.489 Atomic orbital electron populations 1.21649 0.97576 0.98655 0.98564 1.19064 0.92822 0.90699 0.86485 1.00963 1.21548 1.31900 1.12948 0.91092 0.91444 1.25805 0.95046 0.95668 1.02318 1.70062 1.37361 1.24226 1.24225 0.85341 0.78038 0.78637 0.78593 1.18514 1.20834 1.20513 1.60316 1.33058 1.32105 1.04025 1.19613 0.88254 0.97361 0.91796 0.91455 1.23287 0.90753 0.75771 0.77970 1.90689 1.43982 1.42391 1.62288 1.84516 1.41698 1.63526 1.42564 1.19624 1.00353 0.96041 0.98614 1.21200 0.96643 0.93238 0.99233 1.21585 0.96024 1.01988 0.94703 1.21526 0.98519 0.91439 0.97871 1.21453 0.97846 0.98581 0.99538 1.17815 0.97991 0.78362 0.98043 1.91484 1.90050 1.34810 1.95820 0.93244 0.96107 0.95626 0.92803 0.82449 0.71577 0.84479 0.82123 0.80958 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 8.01 71.98 0.58 -5.28 16 2 C 0.22 11.58 2.60 44.17 0.11 11.69 16 3 H -0.03 -1.58 7.43 -2.39 -0.02 -1.60 16 4 C -0.54 -29.86 8.59 25.60 0.22 -29.64 16 5 H 0.07 3.59 7.62 -2.91 -0.02 3.56 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -54.38 11.32 21.45 0.24 -54.14 16 8 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.66 -28.98 5.12 -481.03 -2.46 -31.44 16 13 C 0.14 5.50 2.46 43.43 0.11 5.61 16 14 H 0.07 2.83 7.23 -2.39 -0.02 2.81 16 15 C 0.48 18.52 6.94 71.24 0.49 19.02 16 16 O -0.51 -22.62 13.78 21.97 0.30 -22.31 16 17 O -0.51 -15.27 12.39 -51.42 -0.64 -15.90 16 18 C -0.14 -4.51 4.96 -19.82 -0.10 -4.60 16 19 C -0.08 -2.24 8.87 22.26 0.20 -2.05 16 20 C -0.13 -2.29 10.04 22.27 0.22 -2.07 16 21 C -0.08 -1.16 10.04 22.26 0.22 -0.94 16 22 C -0.16 -3.05 10.03 22.31 0.22 -2.82 16 23 C 0.10 2.71 6.98 22.37 0.16 2.87 16 24 F -0.14 -4.42 15.96 44.97 0.72 -3.70 16 25 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 26 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.03 1.33 5.07 -2.39 -0.01 1.32 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.35 14.36 6.48 -89.69 -0.58 13.77 16 30 H 0.42 8.47 9.10 -74.06 -0.67 7.79 16 31 H 0.14 3.86 6.72 -2.91 -0.02 3.84 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -71.07 290.61 2.98 -68.09 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.10 Total: 20.79 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 2.89 Total: -7.16 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.22 Total: -85.58 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.33 Total: -38.22 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.72 Total: -3.70 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.07 2.98 -68.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.384 kcal (2) G-P(sol) polarization free energy of solvation -71.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds