Wall clock time and date at job start Mon Mar 30 2020 00:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47115 * 2 1 4 4 C 1.50694 * 109.47254 * 119.99826 * 2 1 3 5 5 H 1.08006 * 120.00468 * 120.00117 * 4 2 1 6 6 C 1.37883 * 120.00183 * 299.99969 * 4 2 1 7 7 N 1.31519 * 119.99590 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00266 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47224 * 89.99976 * 8 6 4 10 10 H 1.48504 * 109.47133 * 210.00343 * 8 6 4 11 11 H 1.48502 * 109.47021 * 329.99922 * 8 6 4 12 12 N 1.46900 * 109.47184 * 239.99631 * 2 1 3 13 13 C 1.46907 * 111.00001 * 85.00038 * 12 2 1 14 14 H 1.08998 * 109.46646 * 324.99831 * 13 12 2 15 15 C 1.50697 * 109.47216 * 84.99821 * 13 12 2 16 16 O 1.20832 * 119.99953 * 0.02562 * 15 13 12 17 17 O 1.34228 * 120.00322 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47035 * 205.00046 * 13 12 2 19 19 C 1.38248 * 119.97128 * 139.99775 * 18 13 12 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 13 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38196 * 119.97501 * 359.51590 * 23 21 20 25 25 H 1.09003 * 109.47511 * 300.00052 * 1 2 3 26 26 H 1.08995 * 109.47494 * 60.00376 * 1 2 3 27 27 H 1.09005 * 109.47436 * 180.02562 * 1 2 3 28 28 H 0.96995 * 119.99793 * 179.97438 * 7 6 4 29 29 H 1.00900 * 111.00051 * 208.94996 * 12 2 1 30 30 H 0.96689 * 117.00426 * 180.02562 * 17 15 13 31 31 H 1.08001 * 119.98881 * 0.02562 * 19 18 13 32 32 H 1.07996 * 120.01603 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 34 34 H 1.07993 * 119.98776 * 180.24915 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6297 -0.5458 4.4124 10 1 1.3430 -0.9491 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 1 1.2576 0.9328 -2.2907 15 6 3.3911 0.9694 -2.3228 16 8 4.1897 0.7606 -1.4405 17 8 3.6695 1.8667 -3.2815 18 6 1.9786 -0.5678 -3.6258 19 6 1.2288 -0.0802 -4.6800 20 6 1.1333 -0.8038 -5.8536 21 6 1.7884 -2.0178 -5.9730 22 9 1.6952 -2.7263 -7.1196 23 6 2.5344 -2.5078 -4.9144 24 6 2.6325 -1.7801 -3.7437 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7081 1.1610 3.4843 29 1 2.9173 -1.1205 -1.0287 30 1 4.5214 2.3205 -3.2240 31 1 0.7182 0.8669 -4.5868 32 1 0.5472 -0.4230 -6.6768 33 1 3.0425 -3.4565 -5.0051 34 1 3.2175 -2.1602 -2.9193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:24 Heat of formation + Delta-G solvation = -110.134148 kcal Electronic energy + Delta-G solvation = -20129.725968 eV Core-core repulsion = 16748.953114 eV Total energy + Delta-G solvation = -3380.772854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.87544 -40.34902 -38.78341 -36.36839 -35.37633 -33.07275 -31.14825 -30.91629 -28.26089 -25.99998 -25.00551 -22.99502 -22.47040 -20.78239 -19.67845 -17.88871 -17.67335 -17.08643 -16.47078 -16.21044 -15.62867 -15.52569 -14.79478 -14.76202 -14.17162 -13.77015 -13.53743 -13.39924 -13.13422 -12.76442 -12.29904 -12.03088 -11.79938 -11.29827 -11.19501 -10.96870 -10.92739 -10.80589 -10.58034 -10.30451 -10.23150 -10.06780 -9.05372 -8.94181 -8.55396 -8.49442 -7.71690 -6.05778 -4.11181 1.14170 1.29655 2.49828 3.27566 3.30267 3.36188 3.39967 3.70843 4.28042 4.38561 4.70703 4.78913 4.90509 5.05072 5.27901 5.34280 5.37519 5.59548 5.66395 5.94243 6.00700 6.14447 6.28033 6.58294 6.70698 6.73226 6.91126 6.99943 7.06991 7.30611 7.70984 7.76695 8.09092 8.13484 8.20698 8.47203 8.93870 9.53871 11.01140 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.004954 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.524347 B = 5650.452733 C = 5969.655922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.210 3.790 3 H 0.006 0.994 4 C -0.513 4.513 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.651 5.651 13 C 0.137 3.863 14 H 0.120 0.880 15 C 0.449 3.551 16 O -0.498 6.498 17 O -0.521 6.521 18 C -0.070 4.070 19 C -0.073 4.073 20 C -0.156 4.156 21 C 0.091 3.909 22 F -0.145 7.145 23 C -0.155 4.155 24 C -0.064 4.064 25 H 0.084 0.916 26 H 0.005 0.995 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.346 0.654 30 H 0.400 0.600 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -0.714 -15.281 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.283 5.283 13 C 0.023 3.977 14 H 0.138 0.862 15 C 0.288 3.712 16 O -0.384 6.384 17 O -0.331 6.331 18 C -0.071 4.071 19 C -0.091 4.091 20 C -0.175 4.175 21 C 0.072 3.928 22 F -0.124 7.124 23 C -0.174 4.174 24 C -0.082 4.082 25 H 0.103 0.897 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.167 0.833 30 H 0.258 0.742 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.929 -1.149 -15.083 15.155 hybrid contribution 1.618 0.337 1.005 1.934 sum 2.546 -0.812 -14.078 14.329 Atomic orbital electron populations 1.21782 0.97431 0.99790 0.99611 1.19223 0.92559 0.92718 0.85147 0.97634 1.21133 1.31331 1.12578 0.90127 0.92095 1.24887 0.94972 0.95006 0.99064 1.69880 1.36622 1.22927 1.23562 0.86482 0.78478 0.80045 0.82317 1.20739 1.21210 1.19801 1.61272 1.32455 1.28841 1.05766 1.20420 0.91683 0.93222 0.92367 0.86213 1.25167 0.90486 0.77365 0.78218 1.90770 1.48833 1.63385 1.35400 1.84606 1.43452 1.53184 1.51860 1.19567 0.98079 0.95473 0.93951 1.20872 0.97267 0.99457 0.91507 1.21031 1.02318 0.94518 0.99606 1.17733 1.00462 0.91776 0.82801 1.91476 1.94928 1.78016 1.47960 1.21098 1.01576 1.01647 0.93084 1.20895 0.97560 0.93320 0.96413 0.89734 0.97605 0.94559 0.92883 0.83305 0.74250 0.84760 0.84844 0.84853 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.17 37.16 0.34 -2.69 16 2 C 0.21 5.17 2.24 -68.87 -0.15 5.01 16 3 H 0.01 0.16 7.64 -51.93 -0.40 -0.23 16 4 C -0.51 -13.97 8.59 -34.44 -0.30 -14.26 16 5 H 0.06 1.65 7.62 -52.48 -0.40 1.25 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.65 -13.20 5.35 -103.40 -0.55 -13.76 16 13 C 0.14 2.31 2.52 -70.02 -0.18 2.13 16 14 H 0.12 1.99 6.97 -51.93 -0.36 1.63 16 15 C 0.45 7.67 7.31 36.00 0.26 7.93 16 16 O -0.50 -10.31 16.41 -18.76 -0.31 -10.62 16 17 O -0.52 -6.91 13.34 -39.25 -0.52 -7.43 16 18 C -0.07 -1.00 4.88 -104.62 -0.51 -1.51 16 19 C -0.07 -0.90 9.67 -39.59 -0.38 -1.28 16 20 C -0.16 -1.81 10.03 -39.52 -0.40 -2.21 16 21 C 0.09 1.15 7.30 -39.42 -0.29 0.86 16 22 F -0.15 -1.85 17.27 2.25 0.04 -1.81 16 23 C -0.16 -1.94 10.03 -39.51 -0.40 -2.34 16 24 C -0.06 -0.88 9.32 -39.59 -0.37 -1.25 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 26 H 0.00 0.10 7.43 -51.93 -0.39 -0.28 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.35 7.19 6.59 -39.29 -0.26 6.93 16 30 H 0.40 3.67 9.10 45.56 0.41 4.08 16 31 H 0.13 1.40 8.04 -52.49 -0.42 0.97 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.14 1.87 7.24 -52.49 -0.38 1.49 16 LS Contribution 300.16 15.07 4.52 4.52 Total: -1.00 -30.68 300.16 -6.58 -37.27 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.91 Total: 8.05 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.46 Total: -7.97 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.07 Total: -38.34 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.83 Total: -18.05 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.68 -6.58 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.867 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds