Wall clock time and date at job start Mon Mar 30 2020 00:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 H 1.09001 * 109.47092 * 34.99746 * 13 12 2 15 15 C 1.50702 * 109.46909 * 274.99629 * 13 12 2 16 16 O 1.20819 * 120.00140 * 0.02562 * 15 13 12 17 17 O 1.34228 * 119.99852 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.47467 * 154.99663 * 13 12 2 19 19 C 1.38242 * 119.97046 * 39.72235 * 18 13 12 20 20 C 1.38199 * 120.02340 * 179.76640 * 19 18 13 21 21 C 1.38464 * 119.97308 * 0.51581 * 20 19 18 22 22 F 1.35092 * 120.02651 * 179.76815 * 21 20 19 23 23 C 1.38464 * 119.94789 * 359.73676 * 21 20 19 24 24 C 1.38198 * 119.97318 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 30 30 H 0.96698 * 117.00482 * 179.97438 * 17 15 13 31 31 H 1.07997 * 119.99408 * 0.02562 * 19 18 13 32 32 H 1.08007 * 120.01645 * 180.25464 * 20 19 18 33 33 H 1.07998 * 120.01060 * 179.97438 * 23 21 20 34 34 H 1.08000 * 119.98457 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.3912 0.9694 2.3227 16 8 4.1894 0.7612 1.4399 17 8 3.6696 1.8667 3.2814 18 6 1.9787 -0.5678 3.6259 19 6 2.6286 -1.7824 3.7418 20 6 2.5380 -2.5057 4.9159 21 6 1.7874 -2.0185 5.9725 22 9 1.6943 -2.7269 7.1190 23 6 1.1327 -0.8043 5.8532 24 6 1.2287 -0.0804 4.6799 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 1.4496 -1.4980 1.4100 30 1 4.5216 2.3204 3.2240 31 1 3.2106 -2.1643 2.9162 32 1 3.0492 -3.4527 5.0079 33 1 0.5465 -0.4235 6.6765 34 1 0.7184 0.8669 4.5868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:27 Heat of formation + Delta-G solvation = -104.841599 kcal Electronic energy + Delta-G solvation = -20123.658146 eV Core-core repulsion = 16743.114794 eV Total energy + Delta-G solvation = -3380.543352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.95069 -40.16308 -38.80712 -36.28231 -35.33444 -33.06076 -31.21452 -30.96003 -28.15816 -25.84508 -25.08891 -23.05877 -22.48241 -20.75301 -19.99395 -17.85185 -17.56170 -16.75324 -16.43082 -16.06817 -15.65219 -15.44680 -14.76814 -14.61380 -14.31394 -13.80504 -13.56054 -13.20978 -13.11535 -12.91149 -12.32824 -12.11574 -11.81537 -11.52127 -11.07909 -11.05138 -10.94331 -10.78175 -10.58584 -10.20050 -10.09374 -9.89936 -9.13659 -9.06753 -8.59309 -8.36659 -7.52654 -5.98901 -4.00677 1.03907 1.21200 2.73923 3.29415 3.33543 3.41107 3.46830 3.62493 4.20335 4.44733 4.65693 4.70955 4.83850 5.06081 5.28825 5.33908 5.43044 5.60669 5.75161 5.87754 5.94140 6.07438 6.21101 6.48000 6.57861 6.73521 6.82642 6.90295 6.96110 7.16177 7.65075 7.82533 8.15624 8.33447 8.41664 8.52120 9.04966 9.63691 11.08910 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.004956 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.982055 B = 5647.806325 C = 5971.401827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.034 0.966 4 C -0.486 4.486 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.660 5.660 13 C 0.142 3.858 14 H 0.084 0.916 15 C 0.475 3.525 16 O -0.472 6.472 17 O -0.527 6.527 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.156 4.156 21 C 0.096 3.904 22 F -0.144 7.144 23 C -0.157 4.157 24 C -0.070 4.070 25 H 0.005 0.995 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.342 0.658 30 H 0.402 0.598 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -1.334 15.974 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.107 3.893 3 H 0.052 0.948 4 C -0.525 4.525 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.293 5.293 13 C 0.030 3.970 14 H 0.101 0.899 15 C 0.313 3.687 16 O -0.354 6.354 17 O -0.339 6.339 18 C -0.095 4.095 19 C -0.084 4.084 20 C -0.175 4.175 21 C 0.076 3.924 22 F -0.122 7.122 23 C -0.176 4.176 24 C -0.088 4.088 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.162 0.838 30 H 0.260 0.740 31 H 0.164 0.836 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.832 -1.448 15.446 15.536 hybrid contribution -0.136 -0.033 -0.529 0.547 sum 0.695 -1.481 14.917 15.007 Atomic orbital electron populations 1.22486 1.00344 0.99582 1.00739 1.19267 0.89498 0.94535 0.86003 0.94776 1.21077 1.29836 1.12393 0.89187 0.91710 1.24924 0.95353 0.95236 0.99067 1.69876 1.37559 1.23256 1.23277 0.86418 0.78435 0.79662 0.82746 1.19705 1.21263 1.21176 1.60499 1.58870 1.08274 1.01683 1.19749 0.92001 0.94809 0.90417 0.89861 1.23454 0.89361 0.77335 0.78503 1.90758 1.48002 1.61990 1.34686 1.84522 1.43604 1.53533 1.52282 1.19751 0.99087 0.95742 0.94941 1.21106 0.97062 0.93197 0.96993 1.21159 1.01401 1.01873 0.93041 1.17777 1.00100 0.91681 0.82806 1.91480 1.94872 1.77964 1.47924 1.21056 1.02467 0.94487 0.99607 1.20926 0.97068 0.99347 0.91507 0.97567 0.94947 0.88893 0.93129 0.83758 0.74006 0.83551 0.84668 0.84757 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.92 37.16 0.33 -3.60 16 2 C 0.21 5.22 2.21 -68.87 -0.15 5.07 16 3 H 0.03 0.94 7.64 -51.93 -0.40 0.54 16 4 C -0.49 -13.39 8.84 -34.44 -0.30 -13.69 16 5 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 N -0.66 -13.28 4.95 -103.40 -0.51 -13.79 16 13 C 0.14 2.41 2.54 -70.01 -0.18 2.23 16 14 H 0.08 1.38 6.97 -51.93 -0.36 1.02 16 15 C 0.48 8.50 7.36 36.01 0.26 8.77 16 16 O -0.47 -10.43 17.02 -18.74 -0.32 -10.75 16 17 O -0.53 -7.25 13.34 -39.25 -0.52 -7.77 16 18 C -0.09 -1.32 4.64 -104.62 -0.49 -1.80 16 19 C -0.07 -0.88 8.99 -39.59 -0.36 -1.23 16 20 C -0.16 -1.86 10.03 -39.51 -0.40 -2.26 16 21 C 0.10 1.15 7.30 -39.41 -0.29 0.86 16 22 F -0.14 -1.76 17.27 2.25 0.04 -1.73 16 23 C -0.16 -1.75 10.03 -39.51 -0.40 -2.14 16 24 C -0.07 -0.83 9.67 -39.59 -0.38 -1.21 16 25 H 0.01 0.11 7.43 -51.93 -0.39 -0.28 16 26 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.34 6.34 7.72 -39.29 -0.30 6.04 16 30 H 0.40 3.84 9.10 45.56 0.41 4.26 16 31 H 0.15 2.07 7.71 -52.49 -0.40 1.66 16 32 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.36 8.04 -52.49 -0.42 0.94 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -31.50 301.64 -6.59 -38.09 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -2.99 Total: 7.32 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.44 Total: -7.60 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.12 Total: -38.78 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.84 Total: -18.52 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.50 -6.59 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.752 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds