Wall clock time and date at job start Mon Mar 30 2020 00:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 H 1.09001 * 109.47092 * 34.99746 * 13 12 2 15 15 C 1.50702 * 109.46909 * 274.99629 * 13 12 2 16 16 O 1.20819 * 120.00140 * 0.02562 * 15 13 12 17 17 O 1.34228 * 119.99852 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.47467 * 154.99663 * 13 12 2 19 19 C 1.38242 * 119.97046 * 39.72235 * 18 13 12 20 20 C 1.38199 * 120.02340 * 179.76640 * 19 18 13 21 21 C 1.38464 * 119.97308 * 0.51581 * 20 19 18 22 22 F 1.35092 * 120.02651 * 179.76815 * 21 20 19 23 23 C 1.38464 * 119.94789 * 359.73676 * 21 20 19 24 24 C 1.38198 * 119.97318 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 30 30 H 0.96698 * 117.00482 * 179.97438 * 17 15 13 31 31 H 1.07997 * 119.99408 * 0.02562 * 19 18 13 32 32 H 1.08007 * 120.01645 * 180.25464 * 20 19 18 33 33 H 1.07998 * 120.01060 * 179.97438 * 23 21 20 34 34 H 1.08000 * 119.98457 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.3912 0.9694 2.3227 16 8 4.1894 0.7612 1.4399 17 8 3.6696 1.8667 3.2814 18 6 1.9787 -0.5678 3.6259 19 6 2.6286 -1.7824 3.7418 20 6 2.5380 -2.5057 4.9159 21 6 1.7874 -2.0185 5.9725 22 9 1.6943 -2.7269 7.1190 23 6 1.1327 -0.8043 5.8532 24 6 1.2287 -0.0804 4.6799 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 1.4496 -1.4980 1.4100 30 1 4.5216 2.3204 3.2240 31 1 3.2106 -2.1643 2.9162 32 1 3.0492 -3.4527 5.0079 33 1 0.5465 -0.4235 6.6765 34 1 0.7184 0.8669 4.5868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222525.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:27 Heat of formation + Delta-G solvation = -125.813208 kcal Electronic energy + Delta-G solvation = -20124.567543 eV Core-core repulsion = 16743.114794 eV Total energy + Delta-G solvation = -3381.452749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88998 -41.47991 -39.91716 -37.81281 -36.79768 -34.83854 -32.58025 -32.11021 -29.62751 -27.36939 -27.07403 -24.02665 -23.66081 -22.30755 -21.50728 -19.08430 -18.71753 -18.42834 -17.63704 -17.43804 -16.86772 -16.60864 -16.54240 -16.03606 -15.54263 -15.25099 -14.58027 -14.49565 -14.44877 -14.17089 -13.99492 -13.54763 -13.23786 -12.99586 -12.84252 -12.69554 -12.42930 -12.35087 -12.15786 -11.93760 -11.88754 -11.52026 -11.04873 -10.47523 -10.05519 -9.62058 -9.15779 -8.09162 -6.17834 0.04722 0.28781 1.34293 1.41493 1.43747 1.55757 2.07510 2.44550 2.61604 3.20364 3.26185 3.47625 3.57962 3.84782 3.98530 4.19754 4.36285 4.48969 4.49849 4.74096 4.87345 4.94874 4.99936 5.04034 5.15037 5.24239 5.32507 5.52519 5.69273 5.71738 5.80783 5.89603 6.24693 6.54389 6.69345 6.93147 7.15202 7.50480 8.97011 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.004956 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.982055 B = 5647.806325 C = 5971.401827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.223 3.777 3 H -0.002 1.002 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.286 1.286 12 N -0.666 5.666 13 C 0.143 3.857 14 H 0.091 0.909 15 C 0.480 3.520 16 O -0.525 6.525 17 O -0.510 6.510 18 C -0.105 4.105 19 C -0.075 4.075 20 C -0.154 4.154 21 C 0.091 3.909 22 F -0.144 7.144 23 C -0.148 4.148 24 C -0.065 4.065 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.260 0.740 29 H 0.351 0.649 30 H 0.423 0.577 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -1.593 17.664 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.115 3.885 3 H 0.016 0.984 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.212 1.212 12 N -0.300 5.300 13 C 0.031 3.969 14 H 0.108 0.892 15 C 0.321 3.679 16 O -0.412 6.412 17 O -0.323 6.323 18 C -0.106 4.106 19 C -0.094 4.094 20 C -0.173 4.173 21 C 0.072 3.928 22 F -0.123 7.123 23 C -0.167 4.167 24 C -0.084 4.084 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.172 0.828 30 H 0.283 0.717 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.253 -1.698 17.181 17.266 hybrid contribution 0.075 0.086 -0.913 0.920 sum 0.328 -1.612 16.268 16.351 Atomic orbital electron populations 1.22271 0.99079 0.99877 1.00626 1.18936 0.90258 0.92399 0.86945 0.98445 1.21385 1.29829 1.12276 0.90962 0.92991 1.25648 0.95600 0.95954 1.01732 1.69992 1.38277 1.24216 1.23837 0.85510 0.78088 0.78547 0.79469 1.19543 1.20238 1.21176 1.60218 1.58914 1.08945 1.01890 1.19745 0.91706 0.94758 0.90641 0.89188 1.23670 0.89122 0.77130 0.77979 1.90742 1.49742 1.63858 1.36843 1.84459 1.45023 1.52430 1.50389 1.19551 1.00870 0.95899 0.94244 1.21003 0.97508 0.93533 0.97310 1.21267 1.01271 1.02301 0.92429 1.17934 1.00122 0.92078 0.82679 1.91484 1.94859 1.78057 1.47894 1.21328 1.01726 0.93681 0.99926 1.21104 0.96289 1.00093 0.90879 0.94696 0.94320 0.91861 0.93071 0.82809 0.71655 0.84966 0.83126 0.82007 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.24 8.92 71.98 0.64 -6.60 16 2 C 0.22 11.07 2.21 44.17 0.10 11.16 16 3 H 0.00 -0.14 7.64 -2.39 -0.02 -0.15 16 4 C -0.51 -28.43 8.84 25.60 0.23 -28.20 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.10 16 8 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 N -0.67 -27.01 4.95 -481.04 -2.38 -29.39 16 13 C 0.14 4.75 2.54 43.42 0.11 4.87 16 14 H 0.09 2.88 6.97 -2.39 -0.02 2.86 16 15 C 0.48 17.09 7.36 71.24 0.52 17.61 16 16 O -0.52 -23.77 17.02 21.99 0.37 -23.39 16 17 O -0.51 -13.20 13.34 -51.39 -0.69 -13.88 16 18 C -0.10 -2.75 4.64 -19.86 -0.09 -2.85 16 19 C -0.08 -1.94 8.99 22.26 0.20 -1.74 16 20 C -0.15 -3.39 10.03 22.31 0.22 -3.17 16 21 C 0.09 1.94 7.30 22.38 0.16 2.11 16 22 F -0.14 -3.15 17.27 44.97 0.78 -2.37 16 23 C -0.15 -2.76 10.03 22.31 0.22 -2.54 16 24 C -0.07 -1.35 9.67 22.26 0.22 -1.13 16 25 H 0.03 1.34 7.43 -2.39 -0.02 1.32 16 26 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 27 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.35 12.96 7.72 -89.69 -0.69 12.26 16 30 H 0.42 7.36 9.10 -74.06 -0.67 6.69 16 31 H 0.13 3.77 7.71 -2.91 -0.02 3.74 16 32 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.16 2.55 8.04 -2.91 -0.02 2.53 16 Total: -1.00 -68.56 301.64 3.12 -65.44 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.22 Total: 19.30 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 2.98 Total: -9.56 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.14 Total: -82.49 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.31 Total: -37.28 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.56 3.12 -65.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222525.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.371 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds