Wall clock time and date at job start Mon Mar 30 2020 00:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47223 * 2 1 4 4 C 1.50701 * 109.47137 * 239.99429 * 2 1 3 5 5 H 1.08002 * 120.00359 * 240.00506 * 4 2 1 6 6 C 1.37883 * 119.99561 * 60.00476 * 4 2 1 7 7 N 1.31518 * 120.00050 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99693 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47170 * 60.00280 * 8 6 4 10 10 H 1.48505 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47403 * 300.00175 * 8 6 4 12 12 N 1.46900 * 109.46665 * 119.99930 * 2 1 3 13 13 C 1.46896 * 111.00154 * 275.00130 * 12 2 1 14 14 H 1.09004 * 109.46987 * 324.99951 * 13 12 2 15 15 C 1.50697 * 109.47652 * 84.99800 * 13 12 2 16 16 O 1.20833 * 119.99747 * 0.02562 * 15 13 12 17 17 O 1.34230 * 120.00262 * 179.72202 * 15 13 12 18 18 C 1.50700 * 109.47138 * 205.00032 * 13 12 2 19 19 C 1.38237 * 119.97702 * 319.72443 * 18 13 12 20 20 C 1.38197 * 120.03152 * 179.72474 * 19 18 13 21 21 C 1.38469 * 119.96808 * 0.52559 * 20 19 18 22 22 F 1.35101 * 120.02200 * 179.72361 * 21 20 19 23 23 C 1.38458 * 119.94924 * 359.74864 * 21 20 19 24 24 C 1.38198 * 119.97641 * 359.97438 * 23 21 20 25 25 H 1.09005 * 109.46746 * 60.00114 * 1 2 3 26 26 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47222 * 300.00478 * 1 2 3 28 28 H 0.97001 * 119.99703 * 179.97438 * 7 6 4 29 29 H 1.00906 * 110.99787 * 38.95322 * 12 2 1 30 30 H 0.96699 * 116.99771 * 180.27188 * 17 15 13 31 31 H 1.08001 * 119.98782 * 359.97438 * 19 18 13 32 32 H 1.07995 * 120.01760 * 180.25205 * 20 19 18 33 33 H 1.08000 * 120.01274 * 179.97438 * 23 21 20 34 34 H 1.07999 * 119.99121 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2225 2.3469 14 1 2.3648 1.2176 2.0031 15 6 0.7323 0.2859 3.0134 16 8 -0.1878 -0.3649 2.5776 17 8 0.5533 1.0606 4.0949 18 6 3.1063 -0.2777 3.3329 19 6 3.2062 -1.6306 3.5985 20 6 4.1487 -2.0912 4.4982 21 6 4.9858 -1.1956 5.1421 22 9 5.9038 -1.6441 6.0260 23 6 4.8811 0.1598 4.8796 24 6 3.9417 0.6174 3.9751 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7097 1.1618 -3.4844 29 1 1.4494 -1.4979 1.4100 30 1 -0.3292 1.0655 4.4902 31 1 2.5502 -2.3286 3.0995 32 1 4.2293 -3.1486 4.7024 33 1 5.5332 0.8592 5.3815 34 1 3.8595 1.6746 3.7705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:33 Heat of formation + Delta-G solvation = -123.261097 kcal Electronic energy + Delta-G solvation = -20184.724264 eV Core-core repulsion = 16803.382183 eV Total energy + Delta-G solvation = -3381.342082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.85326 -41.73052 -39.84937 -37.91303 -36.74655 -34.83248 -32.60658 -32.06542 -29.66831 -27.33229 -26.96889 -24.02622 -23.57854 -22.39633 -21.52149 -19.11829 -18.82058 -18.48470 -17.85922 -17.54426 -17.08133 -16.57741 -16.51796 -16.07467 -15.42173 -15.15532 -14.60369 -14.53296 -14.37992 -14.17721 -13.80985 -13.32018 -13.21952 -13.02496 -12.90965 -12.79970 -12.51707 -12.29733 -12.11473 -11.90388 -11.87120 -11.64463 -10.92933 -10.44958 -10.00745 -9.55121 -9.34807 -8.09065 -6.20026 0.12114 0.33995 1.16731 1.45509 1.46836 1.54397 2.10636 2.44369 2.67655 3.20001 3.31158 3.40734 3.70438 3.81960 4.01684 4.15739 4.36696 4.44860 4.56656 4.74772 4.95663 5.01852 5.04277 5.09237 5.18848 5.28411 5.34495 5.55609 5.58081 5.70447 5.80721 5.94421 6.20742 6.47684 6.57212 6.90708 7.00057 7.48706 8.96409 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.005386 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.978880 B = 5197.727199 C = 6071.265058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.647 5.647 13 C 0.136 3.864 14 H 0.121 0.879 15 C 0.455 3.545 16 O -0.529 6.529 17 O -0.505 6.505 18 C -0.083 4.083 19 C -0.076 4.076 20 C -0.156 4.156 21 C 0.084 3.916 22 F -0.146 7.146 23 C -0.149 4.149 24 C -0.071 4.071 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.421 0.579 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -0.081 16.145 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.107 3.893 3 H 0.032 0.968 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.278 5.278 13 C 0.023 3.977 14 H 0.139 0.861 15 C 0.296 3.704 16 O -0.418 6.418 17 O -0.317 6.317 18 C -0.084 4.084 19 C -0.094 4.094 20 C -0.174 4.174 21 C 0.065 3.935 22 F -0.125 7.125 23 C -0.167 4.167 24 C -0.090 4.090 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.161 0.839 30 H 0.282 0.718 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.406 -0.087 15.579 16.490 hybrid contribution -1.469 -0.378 -0.531 1.607 sum 3.936 -0.465 15.047 15.561 Atomic orbital electron populations 1.22360 0.99685 0.98899 0.99899 1.19111 0.90168 0.93035 0.87012 0.96796 1.21347 1.30642 1.12686 0.90777 0.92400 1.25687 0.95372 0.95855 1.01845 1.70010 1.37835 1.24195 1.24063 0.85571 0.78741 0.78547 0.78483 1.19926 1.21103 1.19660 1.61136 1.56771 1.08315 1.01544 1.20404 0.87194 1.00059 0.89995 0.86122 1.24906 0.92166 0.75429 0.77919 1.90731 1.44497 1.43558 1.63059 1.84537 1.41761 1.63400 1.42019 1.19456 0.97577 0.94357 0.97017 1.20895 0.97661 0.95209 0.95633 1.21240 0.96685 1.00939 0.98557 1.17911 0.90225 0.93486 0.91845 1.91476 1.64526 1.90034 1.66427 1.21307 1.01025 0.93835 1.00582 1.21086 0.92977 1.00796 0.94095 0.92758 0.96167 0.94766 0.93003 0.83931 0.71782 0.85330 0.83232 0.82196 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.47 7.78 71.98 0.56 -6.91 16 2 C 0.21 10.64 2.57 44.17 0.11 10.75 16 3 H 0.01 0.75 7.43 -2.39 -0.02 0.73 16 4 C -0.52 -28.25 8.84 25.60 0.23 -28.02 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -52.79 11.32 21.45 0.24 -52.55 16 8 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.65 -26.14 5.47 -481.05 -2.63 -28.77 16 13 C 0.14 4.44 2.70 43.42 0.12 4.55 16 14 H 0.12 3.90 7.29 -2.38 -0.02 3.88 16 15 C 0.45 14.26 6.89 71.23 0.49 14.75 16 16 O -0.53 -19.89 13.17 21.94 0.29 -19.60 16 17 O -0.51 -11.70 13.34 -51.41 -0.69 -12.39 16 18 C -0.08 -2.28 4.87 -19.86 -0.10 -2.37 16 19 C -0.08 -2.01 9.31 22.26 0.21 -1.81 16 20 C -0.16 -3.65 10.03 22.31 0.22 -3.42 16 21 C 0.08 1.95 7.30 22.38 0.16 2.11 16 22 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 23 C -0.15 -3.06 10.03 22.31 0.22 -2.84 16 24 C -0.07 -1.60 9.67 22.26 0.22 -1.38 16 25 H 0.05 3.01 6.07 -2.38 -0.01 3.00 16 26 H 0.02 0.99 8.13 -2.39 -0.02 0.97 16 27 H 0.03 1.58 5.07 -2.39 -0.01 1.57 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.34 13.80 6.86 -89.69 -0.62 13.19 16 30 H 0.42 6.14 9.10 -74.06 -0.67 5.47 16 31 H 0.13 3.49 7.25 -2.91 -0.02 3.47 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 34 H 0.15 2.79 8.04 -2.91 -0.02 2.76 16 Total: -1.00 -64.41 294.19 2.78 -61.63 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.13 Total: 22.08 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 2.89 Total: -13.54 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.39 Total: -81.32 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.40 Total: -31.99 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.41 2.78 -61.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.627 kcal (2) G-P(sol) polarization free energy of solvation -64.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds