Wall clock time and date at job start Mon Mar 30 2020 00:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47302 * 2 1 4 4 C 1.36938 * 119.99725 * 264.41579 * 3 2 1 5 5 H 1.08001 * 119.99487 * 186.51188 * 4 3 2 6 6 C 1.38811 * 120.00213 * 6.50574 * 4 3 2 7 7 N 1.31617 * 120.00090 * 26.71265 * 6 4 3 8 8 Si 1.86799 * 119.99779 * 206.71372 * 6 4 3 9 9 H 1.48498 * 109.47285 * 94.98844 * 8 6 4 10 10 H 1.48507 * 109.46844 * 214.98671 * 8 6 4 11 11 H 1.48497 * 109.47368 * 334.98131 * 8 6 4 12 12 C 1.46495 * 119.99627 * 84.41031 * 3 2 1 13 13 H 1.08994 * 109.47654 * 5.84186 * 12 3 2 14 14 C 1.50702 * 109.46903 * 125.84112 * 12 3 2 15 15 O 1.20828 * 120.00096 * 20.17191 * 14 12 3 16 16 O 1.34225 * 120.00168 * 200.17205 * 14 12 3 17 17 C 1.50706 * 109.46946 * 245.83264 * 12 3 2 18 18 C 1.38213 * 120.01682 * 341.04317 * 17 12 3 19 19 C 1.38219 * 120.03159 * 180.02562 * 18 17 12 20 20 C 1.38272 * 120.04649 * 359.97438 * 19 18 17 21 21 C 1.38181 * 120.02501 * 0.02562 * 20 19 18 22 22 C 1.38436 * 120.00814 * 161.06288 * 17 12 3 23 23 F 1.35100 * 120.03250 * 0.02562 * 22 17 12 24 24 H 1.09002 * 109.47302 * 179.67717 * 1 2 3 25 25 H 1.09002 * 109.46790 * 299.67141 * 1 2 3 26 26 H 1.09000 * 109.47167 * 59.67757 * 1 2 3 27 27 H 1.09005 * 109.46879 * 239.99811 * 2 1 3 28 28 H 1.08999 * 109.47171 * 120.00074 * 2 1 3 29 29 H 0.96998 * 120.00012 * 180.02562 * 7 6 4 30 30 H 0.96701 * 117.00355 * 179.97438 * 16 14 12 31 31 H 1.08007 * 119.98528 * 0.04426 * 18 17 12 32 32 H 1.07997 * 119.98177 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.98765 * 179.71624 * 20 19 18 34 34 H 1.08000 * 120.01035 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3554 1.9882 -1.1803 5 1 2.8135 2.9662 -1.1730 6 6 2.1084 1.3465 -2.3862 7 7 1.1337 0.4665 -2.4758 8 14 3.1594 1.7318 -3.8816 9 1 4.2579 0.7379 -3.9840 10 1 2.3204 1.6701 -5.1054 11 1 3.7351 3.0937 -3.7445 12 6 2.1460 2.1129 1.2627 13 1 1.9338 1.4416 2.0947 14 6 3.5489 2.6474 1.3939 15 8 4.2435 2.7688 0.4126 16 8 4.0270 2.9888 2.6008 17 6 1.1681 3.2594 1.2799 18 6 0.6232 3.7213 0.0967 19 6 -0.2734 4.7731 0.1121 20 6 -0.6266 5.3642 1.3112 21 6 -0.0832 4.9042 2.4954 22 6 0.8155 3.8507 2.4810 23 9 1.3481 3.4007 3.6382 24 1 -0.3634 -1.0277 -0.0058 25 1 -0.3633 0.5087 0.8930 26 1 -0.3633 0.5188 -0.8871 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9614 0.0179 -3.3183 30 1 4.9325 3.3265 2.6349 31 1 0.8978 3.2599 -0.8404 32 1 -0.6990 5.1331 -0.8129 33 1 -1.3238 6.1891 1.3217 34 1 -0.3589 5.3663 3.4318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:50 Heat of formation + Delta-G solvation = -82.970879 kcal Electronic energy + Delta-G solvation = -21407.071919 eV Core-core repulsion = 18027.476953 eV Total energy + Delta-G solvation = -3379.594967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.73374 -41.37984 -39.72901 -37.90536 -36.73553 -34.05278 -32.50232 -31.32092 -30.52195 -28.45402 -25.54420 -23.75557 -23.58440 -22.58302 -21.37222 -19.19153 -18.88204 -18.34544 -17.33158 -17.19398 -16.94956 -16.56899 -16.21747 -15.92426 -15.40049 -15.21248 -14.76648 -14.50618 -13.95525 -13.91050 -13.71587 -13.39025 -13.05825 -12.92817 -12.77453 -12.49654 -12.41545 -12.26581 -12.17268 -11.96655 -11.63846 -11.33537 -11.11491 -10.33961 -9.69759 -9.48358 -9.01679 -7.85561 -5.11307 0.26593 0.45814 1.38385 1.45472 1.50992 1.58261 2.15755 2.52809 2.85618 3.25294 3.39401 3.50582 3.85637 4.07949 4.13624 4.38887 4.50920 4.60319 4.64961 4.70784 5.03933 5.09533 5.17556 5.21597 5.28755 5.35475 5.59495 5.72369 5.74008 5.77902 5.82803 6.12476 6.18520 6.29300 7.17464 7.18674 7.77315 8.16884 9.16701 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.008656 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.916994 B = 3234.054928 C = 3548.505389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.162 3.838 3 N -0.581 5.581 4 C -0.225 4.225 5 H 0.072 0.928 6 C -0.037 4.037 7 N -0.902 5.902 8 Si 0.938 3.062 9 H -0.299 1.299 10 H -0.292 1.292 11 H -0.284 1.284 12 C 0.225 3.775 13 H 0.106 0.894 14 C 0.462 3.538 15 O -0.525 6.525 16 O -0.513 6.513 17 C -0.147 4.147 18 C -0.086 4.086 19 C -0.147 4.147 20 C -0.083 4.083 21 C -0.164 4.164 22 C 0.090 3.910 23 F -0.139 7.139 24 H 0.040 0.960 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.250 0.750 30 H 0.415 0.585 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 7.008 10.036 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.038 3.962 3 N -0.301 5.301 4 C -0.354 4.354 5 H 0.089 0.911 6 C -0.233 4.233 7 N -0.548 5.548 8 Si 0.769 3.231 9 H -0.227 1.227 10 H -0.219 1.219 11 H -0.210 1.210 12 C 0.114 3.886 13 H 0.124 0.876 14 C 0.302 3.698 15 O -0.412 6.412 16 O -0.325 6.325 17 C -0.150 4.150 18 C -0.104 4.104 19 C -0.165 4.165 20 C -0.101 4.101 21 C -0.183 4.183 22 C 0.070 3.930 23 F -0.118 7.118 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.276 0.724 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.306 6.747 9.630 12.214 hybrid contribution 1.517 -0.040 -0.889 1.759 sum -1.789 6.707 8.741 11.162 Atomic orbital electron populations 1.22012 0.97543 0.99232 1.00095 1.20932 0.93677 0.82989 0.98608 1.44211 1.74521 1.11111 1.00294 1.19178 1.30605 1.02133 0.83486 0.91070 1.25101 0.98892 1.00449 0.98843 1.70279 1.27483 1.31806 1.25198 0.85689 0.79453 0.77289 0.80661 1.22650 1.21890 1.20957 1.18473 0.86199 0.92409 0.91539 0.87584 1.25066 0.91015 0.73515 0.80212 1.90693 1.60252 1.50331 1.39971 1.84606 1.37488 1.76816 1.33598 1.20341 1.01999 0.99444 0.93195 1.22121 0.93941 0.94561 0.99779 1.21546 0.98469 0.96747 0.99732 1.21396 0.98565 0.99516 0.90606 1.21351 0.98593 0.97037 1.01278 1.17808 0.97627 0.96947 0.80612 1.91467 1.85045 1.88507 1.46739 0.94148 0.96074 0.91844 0.91207 0.95589 0.94065 0.72439 0.83402 0.84297 0.81651 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 9.75 71.98 0.70 -4.91 16 2 C 0.16 7.46 5.57 86.38 0.48 7.94 16 3 N -0.58 -27.67 2.19 -686.40 -1.50 -29.18 16 4 C -0.23 -11.82 4.95 84.03 0.42 -11.41 16 5 H 0.07 3.97 6.15 -2.91 -0.02 3.95 16 6 C -0.04 -1.98 4.88 84.86 0.41 -1.57 16 7 N -0.90 -48.20 8.68 21.65 0.19 -48.01 16 8 Si 0.94 45.28 29.63 68.60 2.03 47.31 16 9 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 12 C 0.23 9.36 2.63 43.50 0.11 9.48 16 13 H 0.11 4.12 7.67 -2.39 -0.02 4.10 16 14 C 0.46 18.91 7.49 71.24 0.53 19.44 16 15 O -0.52 -25.26 14.71 21.96 0.32 -24.94 16 16 O -0.51 -16.22 13.01 -51.37 -0.67 -16.89 16 17 C -0.15 -5.66 5.09 -19.82 -0.10 -5.76 16 18 C -0.09 -3.43 8.84 22.26 0.20 -3.23 16 19 C -0.15 -4.55 10.04 22.27 0.22 -4.33 16 20 C -0.08 -2.04 10.04 22.26 0.22 -1.82 16 21 C -0.16 -4.29 10.03 22.31 0.22 -4.06 16 22 C 0.09 2.97 7.23 22.37 0.16 3.13 16 23 F -0.14 -4.53 16.27 44.97 0.73 -3.79 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 3.12 6.41 -2.39 -0.02 3.11 16 27 H 0.07 3.62 5.80 -2.38 -0.01 3.61 16 28 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 29 H 0.25 13.16 8.31 -92.71 -0.77 12.38 16 30 H 0.42 9.15 9.10 -74.06 -0.67 8.48 16 31 H 0.15 7.04 4.46 -2.91 -0.01 7.03 16 32 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -62.52 288.72 5.16 -57.36 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.47 Total: 15.24 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 3.59 Total: 2.91 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.32 Total: -77.19 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.35 Total: -41.83 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.73 Total: -3.79 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -62.52 5.16 -57.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.614 kcal (2) G-P(sol) polarization free energy of solvation -62.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds