Wall clock time and date at job start Mon Mar 30 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.36929 * 120.00563 * 97.25799 * 3 2 1 5 5 H 1.08004 * 120.00804 * 161.21233 * 4 3 2 6 6 C 1.38818 * 119.99909 * 341.21660 * 4 3 2 7 7 N 1.31622 * 119.99668 * 353.14318 * 6 4 3 8 8 Si 1.86796 * 120.00536 * 173.14248 * 6 4 3 9 9 H 1.48504 * 109.47186 * 89.99746 * 8 6 4 10 10 H 1.48493 * 109.47498 * 210.00407 * 8 6 4 11 11 H 1.48503 * 109.47024 * 330.00274 * 8 6 4 12 12 C 1.46506 * 119.99812 * 277.25853 * 3 2 1 13 13 H 1.08999 * 109.47331 * 351.84662 * 12 3 2 14 14 C 1.50702 * 109.47205 * 231.84273 * 12 3 2 15 15 O 1.20826 * 119.99713 * 0.02562 * 14 12 3 16 16 O 1.34228 * 119.99983 * 180.02562 * 14 12 3 17 17 C 1.50703 * 109.47093 * 111.84586 * 12 3 2 18 18 C 1.38222 * 120.01441 * 22.31229 * 17 12 3 19 19 C 1.38220 * 120.02556 * 179.97438 * 18 17 12 20 20 C 1.38268 * 120.05206 * 0.02562 * 19 18 17 21 21 C 1.38175 * 120.02704 * 359.97438 * 20 19 18 22 22 C 1.38439 * 120.01273 * 202.29075 * 17 12 3 23 23 F 1.35100 * 120.02562 * 0.05013 * 22 17 12 24 24 H 1.09002 * 109.46613 * 187.43998 * 1 2 3 25 25 H 1.09001 * 109.46891 * 307.43831 * 1 2 3 26 26 H 1.08998 * 109.47023 * 67.44121 * 1 2 3 27 27 H 1.08999 * 109.46885 * 239.99881 * 2 1 3 28 28 H 1.08998 * 109.47272 * 119.99854 * 2 1 3 29 29 H 0.97004 * 119.99987 * 179.97438 * 7 6 4 30 30 H 0.96703 * 116.99433 * 180.02562 * 16 14 12 31 31 H 1.07999 * 119.98651 * 0.02562 * 18 17 12 32 32 H 1.07996 * 119.97273 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.98533 * 179.72067 * 20 19 18 34 34 H 1.07995 * 120.01321 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3878 1.9769 1.1763 5 1 3.0181 2.8538 1.1630 6 6 1.9523 1.4535 2.3860 7 7 1.0778 0.4700 2.4008 8 14 2.6073 2.1451 3.9929 9 1 1.7350 3.2588 4.4446 10 1 2.6192 1.0763 5.0236 11 1 3.9886 2.6504 3.7878 12 6 2.1113 2.1252 -1.2586 13 1 1.9165 1.4524 -2.0937 14 6 3.4938 2.7092 -1.3960 15 8 4.3170 2.5226 -0.5315 16 8 3.8105 3.4366 -2.4787 17 6 1.0939 3.2370 -1.2613 18 6 0.5933 3.7190 -0.0665 19 6 -0.3395 4.7390 -0.0687 20 6 -0.7733 5.2780 -1.2658 21 6 -0.2743 4.7978 -2.4615 22 6 0.6606 3.7762 -2.4605 23 9 1.1488 3.3055 -3.6290 24 1 -0.3632 -1.0191 0.1331 25 1 -0.3633 0.6247 0.8160 26 1 -0.3633 0.3942 -0.9490 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.7738 0.1040 3.2462 30 1 4.7096 3.7901 -2.5224 31 1 0.9317 3.2990 0.8691 32 1 -0.7304 5.1146 0.8653 33 1 -1.5055 6.0719 -1.2665 34 1 -0.6129 5.2193 -3.3964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:54 Heat of formation + Delta-G solvation = -67.807871 kcal Electronic energy + Delta-G solvation = -21456.187891 eV Core-core repulsion = 18077.250442 eV Total energy + Delta-G solvation = -3378.937449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.34869 -39.76426 -38.28996 -36.24018 -35.10613 -32.34732 -30.70212 -29.93172 -28.85097 -26.75425 -23.71867 -22.19338 -22.11494 -20.97903 -19.75812 -17.44771 -17.28937 -16.85623 -15.83893 -15.79623 -15.23266 -15.01052 -14.73105 -14.41257 -13.67431 -13.42548 -13.22524 -12.94312 -12.49981 -12.31056 -12.00603 -11.66222 -11.57063 -11.23612 -10.97544 -10.91734 -10.69114 -10.61883 -10.39088 -10.07286 -9.99617 -9.56143 -9.48233 -8.46501 -8.31408 -8.10021 -7.03132 -5.82814 -3.30036 1.64714 1.81752 3.01528 3.31773 3.40769 3.46011 3.68539 4.19520 4.41977 4.78083 5.09713 5.20567 5.33608 5.40473 5.61114 5.74192 5.86734 6.03414 6.15007 6.42712 6.49984 6.58811 6.66202 6.88438 6.99504 7.05978 7.11050 7.14456 7.21905 7.55698 7.67085 7.73329 8.03586 8.26749 8.68795 9.12273 9.63661 10.09185 11.15591 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.008900 C = 0.008112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.514472 B = 3145.414140 C = 3450.927404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 N -0.567 5.567 4 C -0.237 4.237 5 H 0.081 0.919 6 C -0.001 4.001 7 N -0.899 5.899 8 Si 0.907 3.093 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.228 3.772 13 H 0.100 0.900 14 C 0.455 3.545 15 O -0.488 6.488 16 O -0.526 6.526 17 C -0.124 4.124 18 C -0.061 4.061 19 C -0.147 4.147 20 C -0.101 4.101 21 C -0.175 4.175 22 C 0.104 3.896 23 F -0.140 7.140 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.006 0.994 27 H 0.001 0.999 28 H 0.103 0.897 29 H 0.254 0.746 30 H 0.392 0.608 31 H 0.181 0.819 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 5.901 -7.485 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.042 3.958 3 N -0.287 5.287 4 C -0.366 4.366 5 H 0.099 0.901 6 C -0.198 4.198 7 N -0.544 5.544 8 Si 0.737 3.263 9 H -0.213 1.213 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.115 3.885 13 H 0.118 0.882 14 C 0.293 3.707 15 O -0.372 6.372 16 O -0.336 6.336 17 C -0.127 4.127 18 C -0.078 4.078 19 C -0.165 4.165 20 C -0.119 4.119 21 C -0.194 4.194 22 C 0.084 3.916 23 F -0.118 7.118 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.025 0.975 27 H 0.019 0.981 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.248 0.752 31 H 0.198 0.802 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.397 5.511 -7.058 9.270 hybrid contribution 0.905 0.524 0.506 1.162 sum -1.492 6.035 -6.551 9.032 Atomic orbital electron populations 1.22232 0.98504 0.99606 0.99431 1.20969 0.92831 0.83028 0.98923 1.44076 1.73793 1.10462 1.00333 1.19335 1.23169 1.11180 0.82903 0.90116 1.24967 0.97888 0.99014 0.97972 1.70125 1.32063 1.27449 1.24775 0.86188 0.78947 0.78088 0.83072 1.21279 1.21482 1.20367 1.18403 0.85705 0.91362 0.92985 0.88248 1.25226 0.92167 0.75108 0.78175 1.90698 1.50685 1.55611 1.40218 1.84692 1.37851 1.65196 1.45910 1.20556 1.01094 0.99056 0.92042 1.22368 0.92356 0.92070 1.00978 1.21302 0.99128 0.98361 0.97695 1.20917 0.99386 0.99583 0.92022 1.20896 1.00242 0.99022 0.99252 1.17653 0.96776 0.96127 0.81004 1.91452 1.86743 1.87487 1.46153 0.95542 0.89447 0.97531 0.98063 0.87931 0.93517 0.75156 0.80230 0.86104 0.86174 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.50 37.16 0.35 -2.70 16 2 C 0.17 3.86 5.54 -4.04 -0.02 3.84 16 3 N -0.57 -13.42 2.12 -168.30 -0.36 -13.77 16 4 C -0.24 -6.05 5.11 -15.06 -0.08 -6.12 16 5 H 0.08 2.16 6.30 -52.48 -0.33 1.83 16 6 C 0.00 -0.03 5.12 -17.43 -0.09 -0.12 16 7 N -0.90 -23.25 8.06 55.49 0.45 -22.81 16 8 Si 0.91 20.99 29.56 -169.99 -5.02 15.96 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.23 4.80 2.67 -70.23 -0.19 4.61 16 13 H 0.10 1.99 7.59 -51.93 -0.39 1.60 16 14 C 0.46 9.41 7.39 36.01 0.27 9.68 16 15 O -0.49 -11.61 14.92 -18.75 -0.28 -11.89 16 16 O -0.53 -8.82 12.75 -39.25 -0.50 -9.32 16 17 C -0.12 -2.45 5.02 -104.55 -0.52 -2.98 16 18 C -0.06 -1.21 9.06 -39.59 -0.36 -1.57 16 19 C -0.15 -2.46 10.04 -39.58 -0.40 -2.85 16 20 C -0.10 -1.48 10.04 -39.59 -0.40 -1.88 16 21 C -0.18 -2.70 10.03 -39.51 -0.40 -3.10 16 22 C 0.10 1.87 7.05 -39.42 -0.28 1.59 16 23 F -0.14 -2.48 16.21 2.25 0.04 -2.44 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.09 2.15 6.46 -51.93 -0.34 1.81 16 26 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.00 0.03 8.02 -51.93 -0.42 -0.39 16 28 H 0.10 2.64 5.93 -51.93 -0.31 2.34 16 29 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.39 4.75 9.10 45.56 0.41 5.16 16 31 H 0.18 4.12 4.54 -52.49 -0.24 3.88 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -28.24 288.21 -6.30 -34.54 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -2.86 Total: 6.99 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.11 Total: -1.61 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.09 Total: -36.58 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.78 Total: -21.21 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.24 -6.30 -34.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.268 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds