Wall clock time and date at job start Mon Mar 30 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.36929 * 120.00563 * 97.25799 * 3 2 1 5 5 H 1.08004 * 120.00804 * 161.21233 * 4 3 2 6 6 C 1.38818 * 119.99909 * 341.21660 * 4 3 2 7 7 N 1.31622 * 119.99668 * 353.14318 * 6 4 3 8 8 Si 1.86796 * 120.00536 * 173.14248 * 6 4 3 9 9 H 1.48504 * 109.47186 * 89.99746 * 8 6 4 10 10 H 1.48493 * 109.47498 * 210.00407 * 8 6 4 11 11 H 1.48503 * 109.47024 * 330.00274 * 8 6 4 12 12 C 1.46506 * 119.99812 * 277.25853 * 3 2 1 13 13 H 1.08999 * 109.47331 * 351.84662 * 12 3 2 14 14 C 1.50702 * 109.47205 * 231.84273 * 12 3 2 15 15 O 1.20826 * 119.99713 * 0.02562 * 14 12 3 16 16 O 1.34228 * 119.99983 * 180.02562 * 14 12 3 17 17 C 1.50703 * 109.47093 * 111.84586 * 12 3 2 18 18 C 1.38222 * 120.01441 * 22.31229 * 17 12 3 19 19 C 1.38220 * 120.02556 * 179.97438 * 18 17 12 20 20 C 1.38268 * 120.05206 * 0.02562 * 19 18 17 21 21 C 1.38175 * 120.02704 * 359.97438 * 20 19 18 22 22 C 1.38439 * 120.01273 * 202.29075 * 17 12 3 23 23 F 1.35100 * 120.02562 * 0.05013 * 22 17 12 24 24 H 1.09002 * 109.46613 * 187.43998 * 1 2 3 25 25 H 1.09001 * 109.46891 * 307.43831 * 1 2 3 26 26 H 1.08998 * 109.47023 * 67.44121 * 1 2 3 27 27 H 1.08999 * 109.46885 * 239.99881 * 2 1 3 28 28 H 1.08998 * 109.47272 * 119.99854 * 2 1 3 29 29 H 0.97004 * 119.99987 * 179.97438 * 7 6 4 30 30 H 0.96703 * 116.99433 * 180.02562 * 16 14 12 31 31 H 1.07999 * 119.98651 * 0.02562 * 18 17 12 32 32 H 1.07996 * 119.97273 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.98533 * 179.72067 * 20 19 18 34 34 H 1.07995 * 120.01321 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3878 1.9769 1.1763 5 1 3.0181 2.8538 1.1630 6 6 1.9523 1.4535 2.3860 7 7 1.0778 0.4700 2.4008 8 14 2.6073 2.1451 3.9929 9 1 1.7350 3.2588 4.4446 10 1 2.6192 1.0763 5.0236 11 1 3.9886 2.6504 3.7878 12 6 2.1113 2.1252 -1.2586 13 1 1.9165 1.4524 -2.0937 14 6 3.4938 2.7092 -1.3960 15 8 4.3170 2.5226 -0.5315 16 8 3.8105 3.4366 -2.4787 17 6 1.0939 3.2370 -1.2613 18 6 0.5933 3.7190 -0.0665 19 6 -0.3395 4.7390 -0.0687 20 6 -0.7733 5.2780 -1.2658 21 6 -0.2743 4.7978 -2.4615 22 6 0.6606 3.7762 -2.4605 23 9 1.1488 3.3055 -3.6290 24 1 -0.3632 -1.0191 0.1331 25 1 -0.3633 0.6247 0.8160 26 1 -0.3633 0.3942 -0.9490 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.7738 0.1040 3.2462 30 1 4.7096 3.7901 -2.5224 31 1 0.9317 3.2990 0.8691 32 1 -0.7304 5.1146 0.8653 33 1 -1.5055 6.0719 -1.2665 34 1 -0.6129 5.2193 -3.3964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:53 Heat of formation + Delta-G solvation = -83.931061 kcal Electronic energy + Delta-G solvation = -21456.887045 eV Core-core repulsion = 18077.250442 eV Total energy + Delta-G solvation = -3379.636603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.70800 -41.37667 -39.70482 -37.89694 -36.74174 -34.03587 -32.44696 -31.28079 -30.52828 -28.40448 -25.56216 -23.66532 -23.54828 -22.57661 -21.42235 -19.14116 -18.88284 -18.33928 -17.30477 -17.24950 -16.95496 -16.59973 -16.21366 -15.89388 -15.36356 -15.13238 -14.73245 -14.45598 -13.97073 -13.90846 -13.69949 -13.29484 -13.01914 -12.91425 -12.75086 -12.57654 -12.39915 -12.21573 -12.07509 -11.93886 -11.64006 -11.35818 -11.26815 -10.36171 -9.68273 -9.44885 -8.88020 -7.75622 -5.22894 0.30811 0.48775 1.38000 1.45476 1.49933 1.58079 2.17448 2.51997 2.87112 3.30207 3.45499 3.53830 3.85088 4.09772 4.14533 4.40913 4.51892 4.62482 4.68082 4.73693 5.08527 5.12209 5.19106 5.26611 5.31781 5.37377 5.59058 5.73915 5.76682 5.80253 5.83091 6.14800 6.20065 6.37886 7.16878 7.20190 7.77015 8.19369 9.21256 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.008900 C = 0.008112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.514472 B = 3145.414140 C = 3450.927404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.168 3.832 3 N -0.579 5.579 4 C -0.227 4.227 5 H 0.063 0.937 6 C -0.041 4.041 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.292 1.292 11 H -0.290 1.290 12 C 0.223 3.777 13 H 0.107 0.893 14 C 0.464 3.536 15 O -0.527 6.527 16 O -0.512 6.512 17 C -0.141 4.141 18 C -0.087 4.087 19 C -0.148 4.148 20 C -0.084 4.084 21 C -0.164 4.164 22 C 0.095 3.905 23 F -0.141 7.141 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.248 0.752 30 H 0.416 0.584 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 7.729 -9.169 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 N -0.300 5.300 4 C -0.356 4.356 5 H 0.080 0.920 6 C -0.236 4.236 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.216 1.216 12 C 0.111 3.889 13 H 0.124 0.876 14 C 0.304 3.696 15 O -0.415 6.415 16 O -0.324 6.324 17 C -0.145 4.145 18 C -0.105 4.105 19 C -0.166 4.166 20 C -0.102 4.102 21 C -0.183 4.183 22 C 0.075 3.925 23 F -0.119 7.119 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.276 0.724 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.182 0.818 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.609 7.370 -8.787 12.023 hybrid contribution 1.298 0.075 0.872 1.565 sum -2.311 7.445 -7.915 11.109 Atomic orbital electron populations 1.21991 0.97577 0.99637 0.98733 1.20853 0.93538 0.83057 0.98181 1.44077 1.74338 1.10740 1.00824 1.19162 1.22180 1.10371 0.83881 0.91951 1.25405 0.98679 0.99843 0.99692 1.70250 1.32973 1.28255 1.24482 0.85473 0.77789 0.77529 0.80844 1.20551 1.21824 1.21580 1.18541 0.86318 0.92143 0.91875 0.87588 1.24960 0.91618 0.74803 0.78209 1.90688 1.51678 1.57334 1.41775 1.84600 1.39780 1.64214 1.43791 1.20332 1.01473 0.99618 0.93032 1.22058 0.94595 0.94175 0.99678 1.21518 0.98141 0.97270 0.99698 1.21361 0.98850 0.99411 0.90570 1.21329 0.98462 0.97396 1.01102 1.17765 0.97559 0.96985 0.80204 1.91448 1.86907 1.87666 1.45918 0.94509 0.92067 0.96585 0.96568 0.90770 0.94165 0.72401 0.83667 0.84481 0.81773 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 9.50 71.98 0.68 -4.64 16 2 C 0.17 7.92 5.54 86.38 0.48 8.40 16 3 N -0.58 -28.00 2.12 -686.38 -1.45 -29.45 16 4 C -0.23 -11.92 5.11 84.04 0.43 -11.49 16 5 H 0.06 3.48 6.30 -2.91 -0.02 3.46 16 6 C -0.04 -2.17 5.12 84.86 0.43 -1.74 16 7 N -0.91 -48.71 8.06 21.65 0.17 -48.54 16 8 Si 0.95 44.39 29.56 68.60 2.03 46.42 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.22 9.36 2.67 43.50 0.12 9.48 16 13 H 0.11 4.21 7.59 -2.39 -0.02 4.19 16 14 C 0.46 19.10 7.39 71.24 0.53 19.63 16 15 O -0.53 -25.47 14.92 21.96 0.33 -25.14 16 16 O -0.51 -16.32 12.75 -51.39 -0.66 -16.97 16 17 C -0.14 -5.48 5.02 -19.82 -0.10 -5.58 16 18 C -0.09 -3.48 9.06 22.26 0.20 -3.27 16 19 C -0.15 -4.62 10.04 22.27 0.22 -4.40 16 20 C -0.08 -2.09 10.04 22.26 0.22 -1.87 16 21 C -0.16 -4.34 10.03 22.31 0.22 -4.12 16 22 C 0.09 3.15 7.05 22.38 0.16 3.31 16 23 F -0.14 -4.63 16.21 44.97 0.73 -3.90 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.06 3.06 6.46 -2.39 -0.02 3.04 16 26 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.02 0.70 8.02 -2.39 -0.02 0.68 16 28 H 0.07 3.94 5.93 -2.39 -0.01 3.93 16 29 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 30 H 0.42 9.21 9.10 -74.06 -0.67 8.54 16 31 H 0.15 6.88 4.54 -2.91 -0.01 6.87 16 32 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -62.38 288.21 5.22 -57.16 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.47 Total: 16.72 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 3.60 Total: 3.71 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.28 Total: -77.99 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.33 Total: -42.12 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.73 Total: -3.90 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -62.38 5.22 -57.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.773 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds