Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39900 * 125.74705 * 2 1 4 4 C 1.30283 * 109.23055 * 180.02562 * 3 2 1 5 5 C 1.41484 * 108.19215 * 359.97438 * 4 3 2 6 6 C 1.46771 * 126.52293 * 180.02562 * 5 4 3 7 7 O 1.21684 * 120.00415 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99851 * 359.97438 * 6 5 4 9 9 C 1.46491 * 120.00327 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47468 * 179.97438 * 9 8 6 11 11 O 1.21295 * 119.99968 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00563 * 179.97438 * 10 9 8 13 13 C 1.37094 * 120.00436 * 180.02562 * 12 10 9 14 14 H 1.07994 * 119.99827 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00097 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00122 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99954 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47251 * 89.99784 * 17 15 13 19 19 H 1.48503 * 109.47057 * 210.00012 * 17 15 13 20 20 H 1.48505 * 109.46908 * 329.99889 * 17 15 13 21 21 C 1.34843 * 125.74700 * 180.02562 * 2 1 3 22 22 N 1.38012 * 126.44466 * 0.24985 * 21 2 1 23 23 H 1.09000 * 109.47059 * 269.98516 * 1 2 3 24 24 H 1.09007 * 109.47099 * 29.97993 * 1 2 3 25 25 H 1.08992 * 109.47218 * 149.98037 * 1 2 3 26 26 H 1.07997 * 125.90245 * 180.02562 * 4 3 2 27 27 H 0.96999 * 119.99510 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.46957 * 299.99854 * 9 8 6 29 29 H 1.08997 * 109.47389 * 59.99184 * 9 8 6 30 30 H 0.97008 * 119.99351 * 359.97438 * 12 10 9 31 31 H 0.96992 * 119.99962 * 179.97438 * 16 15 13 32 32 H 0.96998 * 119.99770 * 179.68279 * 22 21 2 33 33 H 0.96995 * 120.00029 * 359.68672 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7650 -0.0006 5 6 3.5728 -0.6492 -0.0003 6 6 4.7773 -1.4878 -0.0003 7 8 4.6745 -2.7003 -0.0005 8 7 5.9973 -0.9149 -0.0009 9 6 7.1996 -1.7519 -0.0014 10 6 8.4236 -0.8729 -0.0027 11 8 8.3035 0.3341 -0.0037 12 7 9.6519 -1.4277 -0.0029 13 6 10.7654 -0.6280 -0.0036 14 1 10.6584 0.4466 -0.0036 15 6 12.0317 -1.2002 -0.0042 16 7 13.0991 -0.4336 -0.0054 17 14 12.2167 -3.0590 -0.0049 18 1 12.2652 -3.5511 -1.4051 19 1 13.4726 -3.4317 0.6946 20 1 11.0594 -3.6719 0.6954 21 6 2.2528 -1.0944 -0.0005 22 7 1.8307 -2.4084 -0.0059 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3633 -0.8897 -0.5141 26 1 4.3873 1.4237 -0.0003 27 1 6.0791 0.0516 -0.0018 28 1 7.2046 -2.3810 0.8887 29 1 7.2038 -2.3814 -0.8912 30 1 9.7479 -2.3930 -0.0017 31 1 13.9829 -0.8330 -0.0055 32 1 2.4822 -3.1270 -0.0104 33 1 0.8826 -2.6132 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001623553437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = 8.072356 kcal Electronic energy + Delta-G solvation = -19404.640480 eV Core-core repulsion = 16081.206157 eV Total energy + Delta-G solvation = -3323.434323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.40931 -39.16598 -38.04295 -35.19955 -34.33745 -33.57383 -33.20759 -31.75556 -29.24426 -27.88805 -26.74657 -24.31583 -22.42086 -20.92300 -20.02214 -19.54235 -18.67800 -17.99459 -17.02883 -16.24714 -15.95631 -15.58168 -15.25659 -15.09591 -14.84589 -14.54945 -13.81981 -13.66032 -13.40661 -13.06269 -12.99639 -12.91651 -12.41117 -12.12188 -11.97724 -11.41168 -11.20267 -10.94957 -10.61086 -10.02622 -9.68777 -9.65477 -9.18143 -8.76783 -8.71141 -8.26175 -7.92895 -6.36859 -3.89109 1.75678 2.06209 2.24145 3.02553 3.07019 3.14883 3.47696 3.55275 3.59828 3.73082 4.07041 4.26246 4.63465 4.76689 4.83214 5.01862 5.13688 5.18304 5.33235 5.56378 5.79059 5.88993 5.90712 6.13277 6.46931 6.72656 7.12646 7.24210 7.48836 7.67951 7.96693 8.05683 8.48092 8.60838 8.86233 9.34445 9.68788 10.75506 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.046490 B = 0.003563 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.139098 B = 7855.856633 C = 8437.548190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.404 5.404 3 N -0.308 5.308 4 C 0.118 3.882 5 C -0.367 4.367 6 C 0.604 3.396 7 O -0.579 6.579 8 N -0.705 5.705 9 C 0.110 3.890 10 C 0.439 3.561 11 O -0.578 6.578 12 N -0.578 5.578 13 C -0.309 4.309 14 H 0.122 0.878 15 C 0.044 3.956 16 N -0.876 5.876 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.267 1.267 21 C 0.432 3.568 22 N -0.831 5.831 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.193 0.807 27 H 0.411 0.589 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.374 0.626 31 H 0.275 0.725 32 H 0.432 0.568 33 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.546 -4.956 -0.075 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.193 5.193 3 N -0.126 5.126 4 C -0.072 4.072 5 C -0.386 4.386 6 C 0.394 3.606 7 O -0.461 6.461 8 N -0.358 5.358 9 C -0.018 4.018 10 C 0.225 3.775 11 O -0.462 6.462 12 N -0.216 5.216 13 C -0.437 4.437 14 H 0.139 0.861 15 C -0.160 4.160 16 N -0.515 5.515 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.192 1.192 21 C 0.197 3.803 22 N -0.381 5.381 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.209 0.791 27 H 0.249 0.751 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.207 0.793 31 H 0.086 0.914 32 H 0.268 0.732 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -24.314 -3.922 -0.076 24.629 hybrid contribution 0.773 -2.048 0.022 2.189 sum -23.541 -5.970 -0.054 24.287 Atomic orbital electron populations 1.21777 0.74403 1.04398 1.03282 1.48180 1.06337 1.02461 1.62285 1.77148 1.01829 1.05100 1.28554 1.23919 0.95268 0.93608 0.94408 1.19266 0.90767 0.93712 1.34855 1.16879 0.82055 0.86572 0.75124 1.90641 1.87102 1.14297 1.54082 1.45351 1.04090 1.11423 1.74930 1.20919 0.84332 0.93356 1.03193 1.19691 0.84099 0.88916 0.84761 1.90537 1.85691 1.14473 1.55462 1.42126 1.05692 1.08126 1.65658 1.19447 0.82068 0.93731 1.48486 0.86069 1.25061 0.95080 0.98575 0.97235 1.69617 0.98103 1.35348 1.48449 0.86672 0.78770 0.84957 0.79090 1.19439 1.20064 1.19213 1.18023 0.89481 0.81887 0.90918 1.41773 1.11081 1.02766 1.82512 0.90822 0.88751 0.90229 0.79054 0.75137 0.89835 0.89832 0.79276 0.91443 0.73157 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.25 59.85 0.67 1.26 16 2 N -0.40 -4.35 4.00 -66.82 -0.27 -4.62 16 3 N -0.31 -4.02 12.47 30.88 0.38 -3.64 16 4 C 0.12 1.54 11.49 -16.97 -0.20 1.35 16 5 C -0.37 -5.18 6.15 -104.82 -0.64 -5.82 16 6 C 0.60 9.78 7.79 -12.81 -0.10 9.68 16 7 O -0.58 -10.18 15.14 5.20 0.08 -10.10 16 8 N -0.71 -11.74 5.52 -62.78 -0.35 -12.09 16 9 C 0.11 1.94 6.15 -5.20 -0.03 1.91 16 10 C 0.44 9.74 7.85 -10.99 -0.09 9.66 16 11 O -0.58 -14.65 15.24 5.54 0.08 -14.56 16 12 N -0.58 -13.53 5.09 -10.97 -0.06 -13.59 16 13 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 14 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 16 N -0.88 -25.18 13.96 55.50 0.77 -24.41 16 17 Si 0.88 19.11 27.74 -169.99 -4.72 14.39 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.30 6.52 56.52 0.37 -4.94 16 21 C 0.43 5.11 7.98 -153.78 -1.23 3.88 16 22 N -0.83 -7.29 9.02 31.40 0.28 -7.01 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.25 7.45 -51.93 -0.39 -0.14 16 26 H 0.19 2.11 7.50 -52.49 -0.39 1.72 16 27 H 0.41 6.74 6.38 -40.82 -0.26 6.48 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.43 4.36 7.01 -40.82 -0.29 4.07 16 33 H 0.40 2.00 8.04 -40.82 -0.33 1.67 16 LS Contribution 293.65 15.07 4.43 4.43 Total: -1.00 -34.87 293.65 -4.35 -39.22 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -3.14 Total: 17.66 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -1.86 Total: 14.30 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: 0.77 Total: -65.34 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.16 Total: -24.66 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.72 Total: 14.39 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.87 -4.35 -39.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623553437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.295 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds