Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39900 * 125.74705 * 2 1 4 4 C 1.30283 * 109.23055 * 180.02562 * 3 2 1 5 5 C 1.41484 * 108.19215 * 359.97438 * 4 3 2 6 6 C 1.46771 * 126.52293 * 180.02562 * 5 4 3 7 7 O 1.21684 * 120.00415 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99851 * 359.97438 * 6 5 4 9 9 C 1.46491 * 120.00327 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47468 * 179.97438 * 9 8 6 11 11 O 1.21295 * 119.99968 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00563 * 179.97438 * 10 9 8 13 13 C 1.37094 * 120.00436 * 180.02562 * 12 10 9 14 14 H 1.07994 * 119.99827 * 0.02562 * 13 12 10 15 15 C 1.38953 * 120.00097 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00122 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99954 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47251 * 89.99784 * 17 15 13 19 19 H 1.48503 * 109.47057 * 210.00012 * 17 15 13 20 20 H 1.48505 * 109.46908 * 329.99889 * 17 15 13 21 21 C 1.34843 * 125.74700 * 180.02562 * 2 1 3 22 22 N 1.38012 * 126.44466 * 0.24985 * 21 2 1 23 23 H 1.09000 * 109.47059 * 269.98516 * 1 2 3 24 24 H 1.09007 * 109.47099 * 29.97993 * 1 2 3 25 25 H 1.08992 * 109.47218 * 149.98037 * 1 2 3 26 26 H 1.07997 * 125.90245 * 180.02562 * 4 3 2 27 27 H 0.96999 * 119.99510 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.46957 * 299.99854 * 9 8 6 29 29 H 1.08997 * 109.47389 * 59.99184 * 9 8 6 30 30 H 0.97008 * 119.99351 * 359.97438 * 12 10 9 31 31 H 0.96992 * 119.99962 * 179.97438 * 16 15 13 32 32 H 0.96998 * 119.99770 * 179.68279 * 22 21 2 33 33 H 0.96995 * 120.00029 * 359.68672 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7650 -0.0006 5 6 3.5728 -0.6492 -0.0003 6 6 4.7773 -1.4878 -0.0003 7 8 4.6745 -2.7003 -0.0005 8 7 5.9973 -0.9149 -0.0009 9 6 7.1996 -1.7519 -0.0014 10 6 8.4236 -0.8729 -0.0027 11 8 8.3035 0.3341 -0.0037 12 7 9.6519 -1.4277 -0.0029 13 6 10.7654 -0.6280 -0.0036 14 1 10.6584 0.4466 -0.0036 15 6 12.0317 -1.2002 -0.0042 16 7 13.0991 -0.4336 -0.0054 17 14 12.2167 -3.0590 -0.0049 18 1 12.2652 -3.5511 -1.4051 19 1 13.4726 -3.4317 0.6946 20 1 11.0594 -3.6719 0.6954 21 6 2.2528 -1.0944 -0.0005 22 7 1.8307 -2.4084 -0.0059 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3633 -0.8897 -0.5141 26 1 4.3873 1.4237 -0.0003 27 1 6.0791 0.0516 -0.0018 28 1 7.2046 -2.3810 0.8887 29 1 7.2038 -2.3814 -0.8912 30 1 9.7479 -2.3930 -0.0017 31 1 13.9829 -0.8330 -0.0055 32 1 2.4822 -3.1270 -0.0104 33 1 0.8826 -2.6132 -0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623553437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -21.583114 kcal Electronic energy + Delta-G solvation = -19405.926438 eV Core-core repulsion = 16081.206157 eV Total energy + Delta-G solvation = -3324.720281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.32465 -40.69992 -39.59541 -36.30078 -35.95395 -35.02283 -33.98651 -33.78554 -30.39932 -29.02497 -27.73621 -26.09638 -23.50760 -21.85743 -21.37469 -21.13883 -20.43786 -19.10464 -18.12862 -17.40706 -17.00082 -16.87230 -16.73650 -16.43316 -16.40707 -15.64550 -15.24410 -15.14314 -14.67523 -14.28556 -14.19906 -13.89210 -13.76940 -13.49104 -13.39268 -12.92878 -12.41725 -12.24691 -11.97938 -11.91729 -11.54845 -10.90643 -10.60557 -10.29975 -10.14519 -9.92288 -8.86121 -8.42735 -6.04427 0.81875 1.22022 1.29903 1.33411 1.36424 1.46169 1.83707 2.21773 2.24795 2.55999 2.78050 2.96933 3.13837 3.55218 4.01124 4.06110 4.18580 4.40709 4.44547 4.50193 4.51873 4.66547 4.68929 5.36075 5.39033 5.51939 5.61230 5.91894 6.27215 6.51053 6.52360 6.64249 6.81955 6.92217 7.29013 7.37644 7.82801 8.73945 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.046490 B = 0.003563 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.139098 B = 7855.856633 C = 8437.548190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.400 5.400 3 N -0.327 5.327 4 C 0.112 3.888 5 C -0.397 4.397 6 C 0.604 3.396 7 O -0.595 6.595 8 N -0.711 5.711 9 C 0.122 3.878 10 C 0.445 3.555 11 O -0.613 6.613 12 N -0.579 5.579 13 C -0.330 4.330 14 H 0.063 0.937 15 C -0.009 4.009 16 N -0.928 5.928 17 Si 0.960 3.040 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.231 1.231 21 C 0.436 3.564 22 N -0.814 5.814 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.200 0.800 27 H 0.410 0.590 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.392 0.608 31 H 0.281 0.719 32 H 0.429 0.571 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.836 -7.780 -0.054 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.189 5.189 3 N -0.145 5.145 4 C -0.078 4.078 5 C -0.417 4.417 6 C 0.396 3.604 7 O -0.479 6.479 8 N -0.363 5.363 9 C -0.005 4.005 10 C 0.233 3.767 11 O -0.499 6.499 12 N -0.219 5.219 13 C -0.459 4.459 14 H 0.081 0.919 15 C -0.209 4.209 16 N -0.568 5.568 17 Si 0.780 3.220 18 H -0.181 1.181 19 H -0.199 1.199 20 H -0.155 1.155 21 C 0.198 3.802 22 N -0.365 5.365 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.217 0.783 27 H 0.248 0.752 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.228 0.772 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -26.683 -6.754 -0.053 27.525 hybrid contribution 1.327 -1.052 0.013 1.694 sum -25.356 -7.806 -0.041 26.530 Atomic orbital electron populations 1.22231 0.71524 1.06274 1.04916 1.48480 1.07753 1.01385 1.61287 1.77073 1.02036 1.06580 1.28839 1.24078 0.95745 0.93580 0.94367 1.19248 0.91047 0.94015 1.37375 1.17108 0.82187 0.86585 0.74507 1.90620 1.87315 1.14871 1.55065 1.45389 1.04108 1.11313 1.75533 1.20837 0.82162 0.92483 1.05051 1.20572 0.85042 0.88978 0.82114 1.90526 1.86488 1.16678 1.56214 1.41924 1.04908 1.08610 1.66487 1.19039 0.84361 0.91938 1.50606 0.91901 1.26076 0.93826 1.05225 0.95779 1.69783 0.99002 1.38480 1.49539 0.85431 0.79906 0.76638 0.80048 1.18098 1.19932 1.15477 1.18059 0.89108 0.83079 0.89943 1.41736 1.12260 1.01386 1.81097 0.89279 0.88142 0.87217 0.78343 0.75219 0.87872 0.87784 0.77212 0.90977 0.73555 0.75138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.25 127.77 1.44 2.20 16 2 N -0.40 -7.79 4.00 -365.31 -1.46 -9.25 16 3 N -0.33 -8.22 12.47 -56.23 -0.70 -8.92 16 4 C 0.11 2.90 11.49 85.72 0.99 3.88 16 5 C -0.40 -10.83 6.15 -19.99 -0.12 -10.95 16 6 C 0.60 18.84 7.79 86.47 0.67 19.51 16 7 O -0.59 -19.79 15.14 -4.30 -0.07 -19.85 16 8 N -0.71 -23.05 5.52 -470.74 -2.60 -25.64 16 9 C 0.12 4.09 6.15 85.63 0.53 4.61 16 10 C 0.45 19.68 7.85 87.66 0.69 20.37 16 11 O -0.61 -32.02 15.24 -3.08 -0.05 -32.07 16 12 N -0.58 -26.85 5.09 -306.99 -1.56 -28.41 16 13 C -0.33 -18.92 10.16 84.04 0.85 -18.06 16 14 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 15 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 16 N -0.93 -55.00 13.96 21.66 0.30 -54.70 16 17 Si 0.96 38.30 27.74 68.60 1.90 40.21 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.23 -7.85 6.52 99.48 0.65 -7.21 16 21 C 0.44 9.45 7.98 132.69 1.06 10.51 16 22 N -0.81 -12.10 9.02 -54.57 -0.49 -12.59 16 23 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.11 0.26 7.45 -2.39 -0.02 0.24 16 26 H 0.20 4.48 7.50 -2.91 -0.02 4.46 16 27 H 0.41 13.51 6.38 -92.71 -0.59 12.92 16 28 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 29 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.39 15.20 5.76 -92.70 -0.53 14.66 16 31 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.43 7.63 7.01 -92.71 -0.65 6.98 16 33 H 0.42 2.78 8.04 -92.71 -0.75 2.03 16 Total: -1.00 -78.72 293.65 0.48 -78.24 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -1.37 Total: 40.96 kcal Atomic # 6 Polarization: 25.45 SS G_CDS: 6.57 Total: 32.02 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -6.51 Total: -139.51 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.11 Total: -51.92 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.21 kcal Total: -78.72 0.48 -78.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623553437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.657 kcal (2) G-P(sol) polarization free energy of solvation -78.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds