Wall clock time and date at job start Mon Mar 30 2020 00:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46924 * 2 1 4 4 C 1.50696 * 109.46924 * 240.00557 * 2 1 3 5 5 H 1.08011 * 119.99577 * 240.00261 * 4 2 1 6 6 C 1.37879 * 120.00543 * 59.99416 * 4 2 1 7 7 N 1.31509 * 119.99537 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47173 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47015 * 120.00073 * 8 6 4 11 11 H 1.48500 * 109.47069 * 240.00680 * 8 6 4 12 12 N 1.46493 * 109.47086 * 119.99881 * 2 1 3 13 13 C 1.46510 * 119.99916 * 60.00451 * 12 2 1 14 14 C 1.34778 * 120.00294 * 239.99675 * 12 2 1 15 15 O 1.21567 * 119.99767 * 355.41869 * 14 12 2 16 16 C 1.47700 * 119.99825 * 175.41527 * 14 12 2 17 17 C 1.39717 * 120.14426 * 48.29631 * 16 14 12 18 18 C 1.37844 * 119.98310 * 179.97438 * 17 16 14 19 19 C 1.38417 * 120.26999 * 359.97438 * 18 17 16 20 20 C 1.38619 * 120.28403 * 0.02562 * 19 18 17 21 21 O 1.35969 * 119.99080 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.01523 * 359.74336 * 20 19 18 23 23 F 1.35094 * 120.13770 * 180.27745 * 22 20 19 24 24 H 1.09003 * 109.47214 * 59.99454 * 1 2 3 25 25 H 1.09003 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47126 * 299.99664 * 1 2 3 27 27 H 0.97006 * 119.99648 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47428 * 95.11071 * 13 12 2 29 29 H 1.08998 * 109.47086 * 215.11378 * 13 12 2 30 30 H 1.08994 * 109.46763 * 335.10879 * 13 12 2 31 31 H 1.07999 * 120.00479 * 359.95137 * 17 16 14 32 32 H 1.08005 * 119.86334 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.85583 * 180.02562 * 19 18 17 34 34 H 0.96702 * 113.99216 * 90.00348 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1465 -0.1872 -4.8165 12 7 2.0183 -0.6905 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0833 15 8 3.1558 1.1012 1.8507 16 6 3.2018 -0.6991 3.3381 17 6 3.7286 -1.9928 3.3084 18 6 4.1093 -2.6086 4.4814 19 6 3.9727 -1.9503 5.6913 20 6 3.4514 -0.6665 5.7336 21 8 3.3193 -0.0256 6.9255 22 6 3.0686 -0.0334 4.5591 23 9 2.5655 1.2198 4.5970 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 0.7093 1.1619 -3.4844 28 1 2.4604 -2.7358 1.0516 29 1 1.5348 -2.2634 2.4967 30 1 0.7348 -2.3240 0.9079 31 1 3.8371 -2.5103 2.3667 32 1 4.5167 -3.6086 4.4562 33 1 4.2735 -2.4390 6.6062 34 1 4.0944 0.4930 7.1811 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628461877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:56 Heat of formation + Delta-G solvation = -113.188887 kcal Electronic energy + Delta-G solvation = -20429.951645 eV Core-core repulsion = 17049.046327 eV Total energy + Delta-G solvation = -3380.905318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.04197 -41.29790 -40.01264 -37.67185 -37.24760 -34.85850 -32.44783 -31.15857 -30.45523 -27.80443 -27.33175 -25.37573 -23.69511 -22.82125 -20.72900 -19.37766 -18.59525 -18.50582 -17.91658 -17.77188 -17.14325 -16.72113 -16.42226 -15.93249 -15.78113 -15.50234 -14.80881 -14.66390 -14.49410 -14.07852 -13.53316 -13.50392 -13.32862 -12.99793 -12.94448 -12.75573 -12.72929 -12.45487 -12.21348 -12.12115 -11.93536 -11.21316 -10.86141 -10.55142 -10.02643 -9.72469 -9.43571 -8.16095 -6.33410 -0.26145 -0.00708 1.41898 1.43404 1.55085 1.63273 2.14844 2.41328 2.48579 2.92788 3.12319 3.25708 3.45049 3.86637 3.95967 4.23935 4.35519 4.54004 4.63442 4.73472 4.82208 4.88947 4.92482 4.97620 5.01205 5.14852 5.24669 5.40456 5.53394 5.62310 5.66335 5.96556 6.11001 6.65104 6.66679 6.73529 7.17764 7.39660 8.89208 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033562 B = 0.005141 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.080665 B = 5445.067416 C = 5856.038226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.259 3.741 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.066 0.934 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.971 3.029 9 H -0.260 1.260 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.588 5.588 13 C 0.079 3.921 14 C 0.535 3.465 15 O -0.598 6.598 16 C -0.160 4.160 17 C -0.070 4.070 18 C -0.094 4.094 19 C -0.083 4.083 20 C 0.070 3.930 21 O -0.496 6.496 22 C 0.077 3.923 23 F -0.148 7.148 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.014 0.986 27 H 0.265 0.735 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.157 -12.429 16.527 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.157 3.843 3 H 0.023 0.977 4 C -0.574 4.574 5 H 0.085 0.915 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.184 1.184 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.323 3.677 15 O -0.481 6.481 16 C -0.164 4.164 17 C -0.088 4.088 18 C -0.112 4.112 19 C -0.101 4.101 20 C 0.024 3.976 21 O -0.309 6.309 22 C 0.056 3.944 23 F -0.127 7.127 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.172 0.828 32 H 0.206 0.794 33 H 0.200 0.800 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 5.652 -11.954 16.256 20.955 hybrid contribution 0.280 1.175 -1.186 1.693 sum 5.931 -10.779 15.070 19.454 Atomic orbital electron populations 1.21904 0.96929 1.00443 0.99891 1.18644 0.91756 0.92213 0.81654 0.97673 1.21565 1.32020 1.13138 0.90694 0.91534 1.25809 0.95004 0.95633 1.02250 1.70044 1.37381 1.24004 1.24468 0.85313 0.78190 0.78464 0.78470 1.18431 1.19955 1.21337 1.48176 1.47838 1.13648 1.22008 1.22036 1.02201 0.80039 1.01976 1.18810 0.79011 0.85503 0.84379 1.90724 1.57545 1.21048 1.78734 1.19978 1.07586 0.97935 0.90925 1.21637 0.94904 0.90455 1.01844 1.21548 0.98076 1.02015 0.89558 1.21904 0.95360 0.91775 1.01107 1.18441 1.02430 0.93821 0.82932 1.84834 1.45777 1.67420 1.32838 1.18658 1.01194 0.80186 0.94330 1.91465 1.84940 1.39021 1.97262 0.91041 0.92802 0.96648 0.92607 0.90832 0.89783 0.90603 0.82815 0.79443 0.79954 0.72827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 8.96 71.98 0.64 -6.04 16 2 C 0.26 14.05 2.63 44.25 0.12 14.17 16 3 H 0.01 0.35 6.91 -2.39 -0.02 0.33 16 4 C -0.54 -29.36 8.37 25.60 0.21 -29.14 16 5 H 0.07 3.47 7.65 -2.90 -0.02 3.45 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.87 11.32 21.45 0.24 -53.62 16 8 Si 0.97 42.95 29.54 68.60 2.03 44.97 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 N -0.59 -26.34 2.75 -830.40 -2.29 -28.63 16 13 C 0.08 2.53 8.26 127.77 1.06 3.59 16 14 C 0.53 24.76 7.03 86.74 0.61 25.37 16 15 O -0.60 -34.14 15.94 -3.93 -0.06 -34.20 16 16 C -0.16 -5.45 4.92 -20.07 -0.10 -5.55 16 17 C -0.07 -1.58 7.76 22.53 0.17 -1.41 16 18 C -0.09 -1.28 10.02 22.22 0.22 -1.05 16 19 C -0.08 -1.19 9.97 22.40 0.22 -0.96 16 20 C 0.07 1.59 6.70 22.50 0.15 1.75 16 21 O -0.50 -9.99 13.37 -93.20 -1.25 -11.24 16 22 C 0.08 2.55 7.26 22.76 0.17 2.71 16 23 F -0.15 -6.04 16.32 44.97 0.73 -5.31 16 24 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 25 H 0.05 2.40 6.66 -2.39 -0.02 2.38 16 26 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 28 H 0.07 2.02 7.04 -2.39 -0.02 2.00 16 29 H 0.08 2.18 6.25 -2.39 -0.01 2.17 16 30 H 0.08 2.45 6.44 -2.39 -0.02 2.44 16 31 H 0.15 3.14 6.22 -2.91 -0.02 3.13 16 32 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.41 4.31 9.06 -74.06 -0.67 3.64 16 Total: -1.00 -80.57 292.61 3.81 -76.75 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.48 Total: 6.70 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 3.93 Total: 4.56 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.04 Total: -82.25 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.31 Total: -45.44 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.73 Total: -5.31 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -80.57 3.81 -76.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628461877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.434 kcal (2) G-P(sol) polarization free energy of solvation -80.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds