Wall clock time and date at job start Mon Mar 30 2020 00:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36010 * 116.99557 * 2 1 4 4 C 1.38712 * 119.97369 * 179.97438 * 3 2 1 5 5 C 1.38089 * 120.02707 * 180.02562 * 4 3 2 6 6 C 1.38916 * 119.97039 * 359.97438 * 5 4 3 7 7 S 1.76207 * 120.02200 * 180.02562 * 6 5 4 8 8 C 1.81399 * 102.99967 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47162 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46858 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99498 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47041 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99811 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00079 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47456 * 89.99482 * 16 14 12 18 18 H 1.48497 * 109.47228 * 210.00126 * 16 14 12 19 19 H 1.48509 * 109.47166 * 329.99585 * 16 14 12 20 20 C 1.38921 * 119.95596 * 0.27781 * 6 5 4 21 21 C 1.38095 * 119.96871 * 359.48865 * 20 6 5 22 22 H 1.09004 * 109.46891 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46849 * 299.99455 * 1 2 3 24 24 H 1.09002 * 109.47408 * 59.99923 * 1 2 3 25 25 H 1.08000 * 119.98689 * 0.02562 * 4 3 2 26 26 H 1.07993 * 120.01361 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47089 * 299.99885 * 8 7 6 28 28 H 1.09004 * 109.47568 * 59.99895 * 8 7 6 29 29 H 1.09000 * 109.46497 * 299.99702 * 9 8 7 30 30 H 1.08996 * 109.46876 * 60.00092 * 9 8 7 31 31 H 1.00901 * 111.00228 * 56.04509 * 10 9 8 32 32 H 1.09004 * 109.47141 * 299.99632 * 11 10 9 33 33 H 1.09002 * 109.47763 * 60.00034 * 11 10 9 34 34 H 0.97002 * 119.99390 * 180.02562 * 15 14 12 35 35 H 1.07995 * 120.01460 * 179.70343 * 20 6 5 36 36 H 1.07998 * 119.98155 * 180.20707 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4316 1.2840 0.0005 5 6 4.0596 2.5138 0.0011 6 6 3.3034 3.6791 0.0005 7 16 4.1033 5.2492 0.0005 8 6 2.7136 6.4151 0.0005 9 6 3.2501 7.8480 -0.0001 10 7 2.1246 8.7922 0.0005 11 6 2.6028 10.1811 0.0005 12 6 1.4229 11.1187 0.0018 13 1 0.4184 10.7223 0.0021 14 6 1.6260 12.4824 0.0015 15 7 2.8494 12.9650 0.0006 16 14 0.1635 13.6445 0.0038 17 1 -0.2220 13.9523 1.4044 18 1 0.5291 14.9017 -0.6968 19 1 -0.9795 13.0031 -0.6946 20 6 1.9161 3.6058 0.0053 21 6 1.2903 2.3748 -0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.0193 0.3778 0.0005 26 1 5.1381 2.5697 0.0019 27 1 2.1050 6.2550 -0.8895 28 1 2.1049 6.2551 0.8905 29 1 3.8589 8.0083 0.8897 30 1 3.8584 8.0078 -0.8903 31 1 1.5100 8.6217 0.7823 32 1 3.2073 10.3573 0.8903 33 1 3.2066 10.3577 -0.8897 34 1 2.9921 13.9245 0.0008 35 1 1.3273 4.5112 0.0097 36 1 0.2119 2.3176 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652324361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:28 Heat of formation + Delta-G solvation = -18.892548 kcal Electronic energy + Delta-G solvation = -16642.615442 eV Core-core repulsion = 13832.012296 eV Total energy + Delta-G solvation = -2810.603146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26349 -37.57179 -35.82564 -32.78655 -31.54387 -30.42068 -30.01179 -27.63983 -26.08160 -23.13184 -22.72225 -21.89733 -21.30404 -18.51223 -17.39241 -16.47074 -16.33588 -16.02187 -15.38240 -15.22087 -14.85104 -14.54819 -14.01525 -13.88263 -13.56402 -13.21262 -13.11854 -12.59989 -12.29733 -12.05338 -11.78096 -11.63142 -11.23325 -11.13540 -11.06372 -10.71877 -10.66454 -10.19969 -9.94461 -9.33605 -9.24319 -9.19753 -8.52824 -7.44944 -7.25211 -6.07166 -4.09782 1.06873 1.08045 1.51780 2.46882 2.99568 3.29467 3.35640 3.39961 3.45279 4.39822 4.50403 4.59976 4.77800 4.82232 5.01377 5.04351 5.05980 5.11856 5.17184 5.28801 5.34713 5.51122 5.66106 5.72774 5.80540 6.06006 6.09800 6.11211 6.22948 6.40342 7.08835 7.15689 7.33851 7.71278 8.05623 8.27164 8.50538 8.98703 9.55238 11.03961 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.002826 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.119114 B = 9904.063545 C =10656.100647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.115 3.885 4 C -0.134 4.134 5 C -0.063 4.063 6 C -0.113 4.113 7 S -0.117 6.117 8 C -0.099 4.099 9 C 0.074 3.926 10 N -0.686 5.686 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.901 3.099 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.093 4.093 21 C -0.187 4.187 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.329 0.671 32 H -0.011 1.011 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.131 0.869 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -24.668 0.826 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.068 3.932 4 C -0.154 4.154 5 C -0.087 4.087 6 C -0.226 4.226 7 S 0.126 5.874 8 C -0.248 4.248 9 C -0.057 4.057 10 N -0.317 5.317 11 C 0.068 3.932 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.728 3.272 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.117 4.117 21 C -0.207 4.207 22 H 0.117 0.883 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.007 0.993 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.328 -24.299 0.129 24.301 hybrid contribution -2.040 0.646 0.912 2.326 sum -2.368 -23.653 1.041 23.794 Atomic orbital electron populations 1.23060 0.78391 1.03911 1.01488 1.86080 1.21387 1.26871 1.88923 1.19005 0.92368 0.84108 0.97713 1.20327 0.91338 0.98193 1.05532 1.20588 0.99732 0.89781 0.98616 1.21702 0.96132 0.97546 1.07197 1.85476 1.14430 0.95191 1.92329 1.23744 0.98181 0.97128 1.05721 1.21551 0.94498 0.88426 1.01213 1.60733 1.16587 1.05505 1.48908 1.19586 0.95940 0.81647 0.96063 1.21155 0.93065 0.90578 1.50707 0.91911 1.24999 0.96001 0.98342 0.95247 1.69964 1.19904 1.13107 1.50629 0.86457 0.82528 0.80134 0.78049 1.20689 1.21176 1.19748 1.21086 0.93053 0.98042 0.99475 1.21145 1.00053 0.91927 1.07603 0.88253 0.92605 0.92570 0.84777 0.84729 0.88693 0.89819 0.95185 0.90646 0.85438 0.99336 0.95182 0.92816 0.85153 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.14 10.50 -19.77 -0.21 -3.35 16 3 C 0.12 1.24 6.69 -39.23 -0.26 0.98 16 4 C -0.13 -1.38 9.98 -39.46 -0.39 -1.78 16 5 C -0.06 -0.70 9.79 -39.38 -0.39 -1.08 16 6 C -0.11 -1.40 6.11 -39.08 -0.24 -1.64 16 7 S -0.12 -1.58 21.92 -107.50 -2.36 -3.94 16 8 C -0.10 -1.40 4.59 37.16 0.17 -1.22 16 9 C 0.07 1.30 5.69 -3.82 -0.02 1.28 16 10 N -0.69 -14.45 6.49 -115.05 -0.75 -15.19 16 11 C 0.19 5.08 5.44 -4.97 -0.03 5.05 16 12 C -0.52 -14.57 9.32 -34.44 -0.32 -14.89 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.09 -1.08 9.36 -39.38 -0.37 -1.45 16 21 C -0.19 -1.95 9.03 -39.46 -0.36 -2.31 16 22 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 24 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 25 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.09 1.32 7.76 -51.92 -0.40 0.92 16 28 H 0.08 1.09 7.73 -51.92 -0.40 0.69 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.33 6.50 8.72 -39.29 -0.34 6.16 16 32 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.13 1.44 5.87 -52.49 -0.31 1.13 16 36 H 0.13 1.07 6.29 -52.49 -0.33 0.74 16 LS Contribution 318.95 15.07 4.81 4.81 Total: -1.00 -30.90 318.95 -9.18 -40.08 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.08 Total: 1.49 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.31 Total: -14.41 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.01 Total: -41.23 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.21 Total: -3.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.36 Total: -3.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.90 -9.18 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652324361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.190 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds