Wall clock time and date at job start Mon Mar 30 2020 00:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36010 * 116.99557 * 2 1 4 4 C 1.38712 * 119.97369 * 179.97438 * 3 2 1 5 5 C 1.38089 * 120.02707 * 180.02562 * 4 3 2 6 6 C 1.38916 * 119.97039 * 359.97438 * 5 4 3 7 7 S 1.76207 * 120.02200 * 180.02562 * 6 5 4 8 8 C 1.81399 * 102.99967 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47162 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46858 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99498 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47041 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99811 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00079 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47456 * 89.99482 * 16 14 12 18 18 H 1.48497 * 109.47228 * 210.00126 * 16 14 12 19 19 H 1.48509 * 109.47166 * 329.99585 * 16 14 12 20 20 C 1.38921 * 119.95596 * 0.27781 * 6 5 4 21 21 C 1.38095 * 119.96871 * 359.48865 * 20 6 5 22 22 H 1.09004 * 109.46891 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46849 * 299.99455 * 1 2 3 24 24 H 1.09002 * 109.47408 * 59.99923 * 1 2 3 25 25 H 1.08000 * 119.98689 * 0.02562 * 4 3 2 26 26 H 1.07993 * 120.01361 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47089 * 299.99885 * 8 7 6 28 28 H 1.09004 * 109.47568 * 59.99895 * 8 7 6 29 29 H 1.09000 * 109.46497 * 299.99702 * 9 8 7 30 30 H 1.08996 * 109.46876 * 60.00092 * 9 8 7 31 31 H 1.00901 * 111.00228 * 56.04509 * 10 9 8 32 32 H 1.09004 * 109.47141 * 299.99632 * 11 10 9 33 33 H 1.09002 * 109.47763 * 60.00034 * 11 10 9 34 34 H 0.97002 * 119.99390 * 180.02562 * 15 14 12 35 35 H 1.07995 * 120.01460 * 179.70343 * 20 6 5 36 36 H 1.07998 * 119.98155 * 180.20707 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 3.4316 1.2840 0.0005 5 6 4.0596 2.5138 0.0011 6 6 3.3034 3.6791 0.0005 7 16 4.1033 5.2492 0.0005 8 6 2.7136 6.4151 0.0005 9 6 3.2501 7.8480 -0.0001 10 7 2.1246 8.7922 0.0005 11 6 2.6028 10.1811 0.0005 12 6 1.4229 11.1187 0.0018 13 1 0.4184 10.7223 0.0021 14 6 1.6260 12.4824 0.0015 15 7 2.8494 12.9650 0.0006 16 14 0.1635 13.6445 0.0038 17 1 -0.2220 13.9523 1.4044 18 1 0.5291 14.9017 -0.6968 19 1 -0.9795 13.0031 -0.6946 20 6 1.9161 3.6058 0.0053 21 6 1.2903 2.3748 -0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.0193 0.3778 0.0005 26 1 5.1381 2.5697 0.0019 27 1 2.1050 6.2550 -0.8895 28 1 2.1049 6.2551 0.8905 29 1 3.8589 8.0083 0.8897 30 1 3.8584 8.0078 -0.8903 31 1 1.5100 8.6217 0.7823 32 1 3.2073 10.3573 0.8903 33 1 3.2066 10.3577 -0.8897 34 1 2.9921 13.9245 0.0008 35 1 1.3273 4.5112 0.0097 36 1 0.2119 2.3176 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652324361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:28 Heat of formation + Delta-G solvation = -38.272384 kcal Electronic energy + Delta-G solvation = -16643.455815 eV Core-core repulsion = 13832.012296 eV Total energy + Delta-G solvation = -2811.443518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01356 -38.33162 -37.54004 -34.82280 -32.49205 -31.58606 -31.17446 -28.32478 -27.91547 -24.38149 -23.67949 -23.42269 -22.70313 -19.28648 -18.63826 -18.20329 -17.14304 -16.95659 -16.71616 -16.64827 -16.18202 -15.67339 -15.24229 -14.83862 -14.59928 -14.57596 -14.40102 -13.88224 -13.73179 -13.13788 -13.01276 -12.86404 -12.70896 -12.52955 -12.43136 -12.18924 -11.97841 -11.87398 -11.32837 -11.22155 -10.68137 -10.17402 -10.03442 -9.25163 -8.24312 -8.23772 -6.35959 0.22103 0.26386 0.46068 1.41650 1.43044 1.43571 1.55358 2.35788 2.39650 2.62647 3.09514 3.55635 3.73688 3.80881 3.85104 4.00463 4.19163 4.29831 4.39637 4.39876 4.46698 4.56693 4.69497 4.73635 4.80735 4.91972 5.02401 5.05233 5.21201 5.25058 5.26757 5.58073 5.61374 5.96942 6.34112 6.37887 6.63768 6.84445 7.35090 8.87626 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.002826 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.119114 B = 9904.063545 C =10656.100647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.112 3.888 4 C -0.139 4.139 5 C -0.067 4.067 6 C -0.130 4.130 7 S -0.131 6.131 8 C -0.086 4.086 9 C 0.078 3.922 10 N -0.683 5.683 11 C 0.207 3.793 12 C -0.537 4.537 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.263 1.263 20 C -0.102 4.102 21 C -0.189 4.189 22 H 0.121 0.879 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.339 0.661 32 H -0.036 1.036 33 H 0.001 0.999 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -25.975 0.978 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.065 3.935 4 C -0.159 4.159 5 C -0.090 4.090 6 C -0.243 4.243 7 S 0.112 5.888 8 C -0.234 4.234 9 C -0.053 4.053 10 N -0.315 5.315 11 C 0.079 3.921 12 C -0.575 4.575 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.126 4.126 21 C -0.210 4.210 22 H 0.139 0.861 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.170 0.830 26 H 0.164 0.836 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.157 0.843 32 H -0.018 1.018 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.048 -25.647 0.286 25.730 hybrid contribution -1.501 0.886 0.862 1.944 sum -3.549 -24.761 1.148 25.040 Atomic orbital electron populations 1.23354 0.76519 1.05677 1.02203 1.86074 1.23373 1.26394 1.88651 1.19203 0.92727 0.84622 0.96992 1.20578 0.91693 0.98587 1.05007 1.20775 1.00427 0.89611 0.98176 1.21733 0.96622 0.96859 1.09049 1.85461 1.14221 0.96193 1.92949 1.23490 0.98483 0.94939 1.06538 1.21501 0.93407 0.89823 1.00568 1.60561 1.17800 1.03638 1.49452 1.19234 0.94875 0.84455 0.93488 1.21530 0.93684 0.91454 1.50845 0.91420 1.25991 0.99093 1.00260 0.94499 1.70096 1.22309 1.13700 1.51350 0.85286 0.78713 0.77505 0.78514 1.19610 1.20784 1.18723 1.21215 0.92872 0.98772 0.99705 1.21365 1.01218 0.91358 1.07017 0.86118 0.91828 0.91851 0.83000 0.83573 0.88365 0.88518 0.95487 0.91651 0.84331 1.01839 0.98052 0.92543 0.84859 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.82 10.50 -93.67 -0.98 -6.80 16 3 C 0.11 2.20 6.69 22.49 0.15 2.35 16 4 C -0.14 -2.64 9.98 22.35 0.22 -2.42 16 5 C -0.07 -1.38 9.79 22.40 0.22 -1.16 16 6 C -0.13 -3.09 6.11 22.60 0.14 -2.95 16 7 S -0.13 -3.45 21.92 -56.49 -1.24 -4.69 16 8 C -0.09 -2.37 4.59 71.98 0.33 -2.04 16 9 C 0.08 2.75 5.69 86.30 0.49 3.24 16 10 N -0.68 -28.95 6.49 -517.91 -3.36 -32.31 16 11 C 0.21 11.15 5.44 85.56 0.47 11.62 16 12 C -0.54 -30.49 9.32 25.60 0.24 -30.25 16 13 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 14 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 15 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 16 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 C -0.10 -2.24 9.36 22.40 0.21 -2.03 16 21 C -0.19 -3.60 9.03 22.35 0.20 -3.40 16 22 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 24 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 25 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.10 2.65 7.76 -2.39 -0.02 2.63 16 28 H 0.10 2.41 7.73 -2.39 -0.02 2.39 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.34 13.26 8.72 -89.69 -0.78 12.48 16 32 H -0.04 -2.08 8.14 -2.39 -0.02 -2.10 16 33 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.13 2.76 5.87 -2.91 -0.02 2.74 16 36 H 0.15 2.12 6.29 -2.91 -0.02 2.10 16 Total: -1.00 -66.01 318.95 1.26 -64.75 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.29 Total: 14.70 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.24 Total: -25.31 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -3.08 Total: -88.62 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.98 Total: -6.80 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.24 Total: -4.69 kcal Total: -66.01 1.26 -64.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652324361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.477 kcal (2) G-P(sol) polarization free energy of solvation -66.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds