Wall clock time and date at job start Mon Mar 30 2020 01:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46398 * 2 1 4 4 N 1.27948 * 119.99940 * 274.99096 * 3 2 1 5 5 Si 1.86802 * 120.00178 * 95.00442 * 3 2 1 6 6 H 1.48501 * 109.47279 * 89.99361 * 5 3 2 7 7 H 1.48506 * 109.47128 * 209.99391 * 5 3 2 8 8 H 1.48502 * 109.46872 * 329.99183 * 5 3 2 9 9 N 1.46903 * 109.46852 * 119.99817 * 2 1 3 10 10 C 1.46902 * 110.99493 * 183.96013 * 9 2 1 11 11 C 1.46887 * 111.00013 * 60.00447 * 9 2 1 12 12 C 1.50705 * 109.47039 * 185.30837 * 11 9 2 13 13 C 1.38232 * 120.07735 * 269.16543 * 12 11 9 14 14 F 1.35093 * 119.96218 * 0.02562 * 13 12 11 15 15 C 1.38559 * 120.06780 * 180.29713 * 13 12 11 16 16 C 1.38355 * 120.22087 * 359.44754 * 15 13 12 17 17 C 1.37960 * 120.14681 * 0.55278 * 16 15 13 18 18 C 1.39345 * 120.07399 * 89.18587 * 12 11 9 19 Xx 1.56999 * 120.10977 * 359.95939 * 18 12 11 20 19 O 1.42001 * 120.00030 * 338.22124 * 19 18 12 21 20 O 1.41995 * 120.00195 * 158.21737 * 19 18 12 22 21 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 23 22 H 1.09004 * 109.47295 * 299.99986 * 1 2 3 24 23 H 1.08993 * 109.47095 * 60.00334 * 1 2 3 25 24 H 1.08996 * 109.47156 * 239.99712 * 2 1 3 26 25 H 0.97000 * 119.99988 * 180.02562 * 4 3 2 27 26 H 1.09007 * 109.46667 * 290.07653 * 10 9 2 28 27 H 1.08995 * 109.47735 * 50.07164 * 10 9 2 29 28 H 1.08999 * 109.47091 * 170.08132 * 10 9 2 30 29 H 1.09006 * 109.47675 * 65.31060 * 11 9 2 31 30 H 1.08994 * 109.47506 * 305.30750 * 11 9 2 32 31 H 1.08002 * 119.88579 * 179.72443 * 15 13 12 33 32 H 1.07992 * 119.92606 * 180.28096 * 16 15 13 34 33 H 1.08006 * 120.03466 * 179.70479 * 17 16 15 35 34 H 0.96700 * 114.00167 * 180.02562 * 20 19 18 36 35 H 0.96699 * 114.00578 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.1545 2.0561 -1.1039 5 14 2.4765 2.2545 1.6116 6 1 3.9092 2.0105 1.9166 7 1 2.2369 3.7155 1.4956 8 1 1.6365 1.7002 2.7036 9 7 2.0197 -0.6925 1.1995 10 6 3.4851 -0.6306 1.2817 11 6 1.5488 -2.0834 1.2334 12 6 1.9596 -2.7212 2.5356 13 6 3.1664 -3.3887 2.6297 14 9 3.9787 -3.4690 1.5533 15 6 3.5411 -3.9803 3.8253 16 6 2.7158 -3.8964 4.9325 17 6 1.5094 -3.2324 4.8487 18 6 1.1235 -2.6398 3.6474 19 8 -0.4504 -0.9104 2.5325 20 8 -1.2870 -2.1705 4.4720 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 2.4780 2.9706 -1.1039 26 1 3.9194 -1.2543 0.5003 27 1 3.8133 0.4002 1.1481 28 1 3.8098 -0.9918 2.2574 29 1 1.9886 -2.6364 0.4034 30 1 0.4624 -2.1015 1.1469 31 1 4.4826 -4.5050 3.8943 32 1 3.0146 -4.3554 5.8633 33 1 0.8643 -3.1721 5.7129 34 1 -1.3249 -0.4982 2.5513 35 1 -2.0928 -1.6547 4.3314 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232759510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:11 Heat of formation + Delta-G solvation = 153.752054 kcal Electronic energy + Delta-G solvation = -20154.582193 eV Core-core repulsion = 16886.166965 eV Total energy + Delta-G solvation = -3268.415228 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.52067 -40.90146 -39.40879 -36.22947 -33.44437 -33.08006 -32.32508 -31.86718 -31.42318 -28.54300 -25.81474 -24.48259 -23.92844 -22.32577 -20.32582 -18.74652 -18.40473 -17.99495 -17.47923 -17.32170 -16.28881 -15.98199 -15.89690 -15.45687 -15.22279 -15.02301 -14.70818 -14.41869 -14.23415 -14.08331 -13.96438 -13.70985 -13.36540 -13.07063 -12.94416 -12.53794 -12.33635 -12.05992 -11.76826 -11.29367 -11.06026 -10.84601 -10.72290 -10.44811 -9.85525 -9.62160 -9.35585 -5.99616 -2.95755 -0.67788 -0.64370 0.81622 1.16992 1.55945 1.71405 1.73935 2.10113 2.46977 2.69488 2.90853 3.08802 3.21966 3.47574 3.51010 3.69143 4.04172 4.12769 4.19738 4.29127 4.37923 4.42375 4.50102 4.57012 4.58509 4.74238 4.78414 4.79704 4.93421 4.98112 5.08488 5.38988 5.85964 5.88578 6.53469 6.87183 6.87379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.119 3.881 3 C -0.001 4.001 4 N -0.633 5.633 5 Si 0.943 3.057 6 H -0.245 1.245 7 H -0.265 1.265 8 H -0.213 1.213 9 N -0.518 5.518 10 C -0.006 4.006 11 C 0.095 3.905 12 C -0.117 4.117 13 C 0.140 3.860 14 F -0.109 7.109 15 C -0.145 4.145 16 C -0.048 4.048 17 C -0.120 4.120 18 C 0.338 3.662 19 O -0.564 6.564 20 O -0.683 6.683 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.339 0.661 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.334 0.666 35 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -3.255 2.417 5.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.011 3.989 3 C -0.249 4.249 4 N -0.246 5.246 5 Si 0.761 3.239 6 H -0.170 1.170 7 H -0.190 1.190 8 H -0.134 1.134 9 N -0.243 5.243 10 C -0.153 4.153 11 C -0.031 4.031 12 C -0.119 4.119 13 C 0.120 3.880 14 F -0.087 7.087 15 C -0.163 4.163 16 C -0.066 4.066 17 C -0.138 4.138 18 C 0.324 3.676 19 O -0.393 6.393 20 O -0.510 6.510 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.182 0.818 32 H 0.192 0.808 33 H 0.192 0.808 34 H 0.171 0.829 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.207 -3.540 2.604 6.813 hybrid contribution -1.046 1.061 -0.738 1.662 sum 4.161 -2.479 1.866 5.191 Atomic orbital electron populations 1.21929 0.91874 1.03089 1.02073 1.20569 0.96752 0.90545 0.91075 1.30357 0.93030 0.98849 1.02697 1.68079 1.10840 1.13996 1.31724 0.85624 0.81938 0.77656 0.78697 1.16977 1.19016 1.13381 1.61910 1.09600 1.13600 1.39190 1.22880 0.87759 1.02743 1.01938 1.21126 1.04638 0.87356 0.90010 1.20157 0.91472 1.01768 0.98513 1.17028 0.86869 0.99162 0.84982 1.91621 1.69948 1.94146 1.53031 1.21655 1.02865 1.00820 0.91004 1.21092 0.89523 0.96225 0.99787 1.21750 0.96588 0.97169 0.98324 1.28319 0.60422 0.87334 0.91559 1.93623 1.33282 1.64552 1.47824 1.93525 1.34136 1.65039 1.58272 0.91369 0.90372 0.91646 0.91632 0.84393 0.93948 0.90908 0.91187 0.92597 0.85277 0.81758 0.80775 0.80774 0.82936 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.09 7.74 37.16 0.29 0.20 16 2 C 0.12 0.12 2.37 -68.86 -0.16 -0.04 16 3 C 0.00 0.00 4.36 -13.90 -0.06 -0.06 16 4 N -0.63 -1.36 13.82 56.23 0.78 -0.58 16 5 Si 0.94 1.32 25.55 -169.99 -4.34 -3.02 16 6 H -0.25 -0.27 6.38 56.52 0.36 0.09 16 7 H -0.27 -0.55 7.11 56.52 0.40 -0.15 16 8 H -0.21 -0.61 7.11 56.52 0.40 -0.21 16 9 N -0.52 -0.43 3.06 -237.73 -0.73 -1.16 16 10 C -0.01 0.00 7.26 60.07 0.44 0.44 16 11 C 0.10 0.01 3.79 -4.98 -0.02 -0.01 16 12 C -0.12 0.08 4.74 -104.21 -0.49 -0.42 16 13 C 0.14 -0.33 5.94 -39.47 -0.23 -0.56 16 14 F -0.11 0.16 15.00 2.25 0.03 0.20 16 15 C -0.14 0.70 10.02 -39.42 -0.40 0.30 16 16 C -0.05 0.26 10.03 -39.64 -0.40 -0.14 16 17 C -0.12 0.28 9.80 -39.25 -0.38 -0.10 16 18 C 0.34 0.18 9.59 -38.74 -0.37 -0.19 16 19 O -0.56 -1.78 10.86 -57.73 -0.63 -2.41 16 20 O -0.68 -4.58 17.46 -57.73 -1.01 -5.59 16 21 H 0.07 0.02 6.14 -51.93 -0.32 -0.30 16 22 H 0.08 0.10 6.42 -51.93 -0.33 -0.24 16 23 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 24 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.34 0.21 8.23 -40.82 -0.34 -0.12 16 26 H 0.04 -0.02 7.52 -51.93 -0.39 -0.41 16 27 H 0.07 0.02 3.71 -51.93 -0.19 -0.17 16 28 H 0.07 -0.04 6.51 -51.93 -0.34 -0.38 16 29 H 0.06 -0.04 7.61 -51.93 -0.39 -0.44 16 30 H 0.13 0.13 4.13 -51.93 -0.21 -0.09 16 31 H 0.16 -1.16 8.06 -52.49 -0.42 -1.59 16 32 H 0.18 -1.49 8.06 -52.49 -0.42 -1.91 16 33 H 0.18 -0.43 7.96 -52.48 -0.42 -0.84 16 34 H 0.33 0.47 8.70 45.56 0.40 0.87 16 35 H 0.33 1.43 8.90 45.56 0.41 1.84 16 LS Contribution 290.21 15.07 4.37 4.37 Total: 0.00 -7.56 290.21 -5.98 -13.54 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -2.66 Total: -4.76 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.80 Total: -0.59 kcal Atomic # 7 Polarization: -1.79 SS G_CDS: 0.05 Total: -1.74 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -1.64 Total: -8.00 kcal Atomic # 9 Polarization: 0.16 SS G_CDS: 0.03 Total: 0.20 kcal Atomic # 14 Polarization: 1.32 SS G_CDS: -4.34 Total: -3.02 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -7.56 -5.98 -13.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232759510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.290 kcal (2) G-P(sol) polarization free energy of solvation -7.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds