Wall clock time and date at job start Mon Mar 30 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46398 * 2 1 4 4 N 1.27948 * 119.99940 * 274.99096 * 3 2 1 5 5 Si 1.86802 * 120.00178 * 95.00442 * 3 2 1 6 6 H 1.48501 * 109.47279 * 89.99361 * 5 3 2 7 7 H 1.48506 * 109.47128 * 209.99391 * 5 3 2 8 8 H 1.48502 * 109.46872 * 329.99183 * 5 3 2 9 9 N 1.46903 * 109.46852 * 119.99817 * 2 1 3 10 10 C 1.46902 * 110.99493 * 183.96013 * 9 2 1 11 11 C 1.46887 * 111.00013 * 60.00447 * 9 2 1 12 12 C 1.50705 * 109.47039 * 185.30837 * 11 9 2 13 13 C 1.38232 * 120.07735 * 269.16543 * 12 11 9 14 14 F 1.35093 * 119.96218 * 0.02562 * 13 12 11 15 15 C 1.38559 * 120.06780 * 180.29713 * 13 12 11 16 16 C 1.38355 * 120.22087 * 359.44754 * 15 13 12 17 17 C 1.37960 * 120.14681 * 0.55278 * 16 15 13 18 18 C 1.39345 * 120.07399 * 89.18587 * 12 11 9 19 Xx 1.56999 * 120.10977 * 359.95939 * 18 12 11 20 19 O 1.42001 * 120.00030 * 338.22124 * 19 18 12 21 20 O 1.41995 * 120.00195 * 158.21737 * 19 18 12 22 21 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 23 22 H 1.09004 * 109.47295 * 299.99986 * 1 2 3 24 23 H 1.08993 * 109.47095 * 60.00334 * 1 2 3 25 24 H 1.08996 * 109.47156 * 239.99712 * 2 1 3 26 25 H 0.97000 * 119.99988 * 180.02562 * 4 3 2 27 26 H 1.09007 * 109.46667 * 290.07653 * 10 9 2 28 27 H 1.08995 * 109.47735 * 50.07164 * 10 9 2 29 28 H 1.08999 * 109.47091 * 170.08132 * 10 9 2 30 29 H 1.09006 * 109.47675 * 65.31060 * 11 9 2 31 30 H 1.08994 * 109.47506 * 305.30750 * 11 9 2 32 31 H 1.08002 * 119.88579 * 179.72443 * 15 13 12 33 32 H 1.07992 * 119.92606 * 180.28096 * 16 15 13 34 33 H 1.08006 * 120.03466 * 179.70479 * 17 16 15 35 34 H 0.96700 * 114.00167 * 180.02562 * 20 19 18 36 35 H 0.96699 * 114.00578 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.1545 2.0561 -1.1039 5 14 2.4765 2.2545 1.6116 6 1 3.9092 2.0105 1.9166 7 1 2.2369 3.7155 1.4956 8 1 1.6365 1.7002 2.7036 9 7 2.0197 -0.6925 1.1995 10 6 3.4851 -0.6306 1.2817 11 6 1.5488 -2.0834 1.2334 12 6 1.9596 -2.7212 2.5356 13 6 3.1664 -3.3887 2.6297 14 9 3.9787 -3.4690 1.5533 15 6 3.5411 -3.9803 3.8253 16 6 2.7158 -3.8964 4.9325 17 6 1.5094 -3.2324 4.8487 18 6 1.1235 -2.6398 3.6474 19 8 -0.4504 -0.9104 2.5325 20 8 -1.2870 -2.1705 4.4720 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 2.4780 2.9706 -1.1039 26 1 3.9194 -1.2543 0.5003 27 1 3.8133 0.4002 1.1481 28 1 3.8098 -0.9918 2.2574 29 1 1.9886 -2.6364 0.4034 30 1 0.4624 -2.1015 1.1469 31 1 4.4826 -4.5050 3.8943 32 1 3.0146 -4.3554 5.8633 33 1 0.8643 -3.1721 5.7129 34 1 -1.3249 -0.4982 2.5513 35 1 -2.0928 -1.6547 4.3314 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232759510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:10 Heat of formation + Delta-G solvation = 149.735271 kcal Electronic energy + Delta-G solvation = -20154.756374 eV Core-core repulsion = 16886.166965 eV Total energy + Delta-G solvation = -3268.589409 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.41288 -40.89402 -39.45706 -36.33995 -33.44233 -33.24027 -32.32376 -31.79732 -31.49734 -28.55271 -25.87704 -24.50353 -23.85200 -22.29724 -20.44667 -18.68577 -18.42611 -17.91209 -17.39760 -17.26091 -16.27582 -16.04605 -15.96780 -15.59253 -15.23239 -14.98424 -14.68641 -14.45720 -14.27754 -14.10522 -13.82461 -13.70881 -13.44009 -13.02977 -12.97998 -12.61618 -12.46163 -12.23416 -11.88636 -11.43231 -11.24771 -10.79268 -10.65755 -10.36575 -9.99913 -9.85687 -9.42554 -6.25824 -2.91621 -0.63336 -0.54845 0.66705 1.02040 1.39285 1.55541 1.85856 1.94809 2.50397 2.65339 2.85558 3.12383 3.37731 3.42980 3.67074 3.73618 4.02809 4.16419 4.21604 4.30682 4.37571 4.48235 4.51665 4.64279 4.70277 4.77488 4.80446 4.81042 4.85339 4.97371 5.16708 5.27692 5.79825 5.82426 6.37837 6.76925 6.81428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.120 3.880 3 C 0.002 3.998 4 N -0.647 5.647 5 Si 0.969 3.031 6 H -0.233 1.233 7 H -0.275 1.275 8 H -0.240 1.240 9 N -0.529 5.529 10 C -0.008 4.008 11 C 0.094 3.906 12 C -0.128 4.128 13 C 0.143 3.857 14 F -0.109 7.109 15 C -0.115 4.115 16 C -0.015 4.015 17 C -0.119 4.119 18 C 0.345 3.655 19 O -0.578 6.578 20 O -0.815 6.815 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.347 0.653 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.208 0.792 32 H 0.228 0.772 33 H 0.178 0.822 34 H 0.338 0.662 35 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -5.122 2.789 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.011 3.989 3 C -0.246 4.246 4 N -0.261 5.261 5 Si 0.787 3.213 6 H -0.157 1.157 7 H -0.200 1.200 8 H -0.163 1.163 9 N -0.254 5.254 10 C -0.155 4.155 11 C -0.032 4.032 12 C -0.130 4.130 13 C 0.123 3.877 14 F -0.087 7.087 15 C -0.133 4.133 16 C -0.032 4.032 17 C -0.137 4.137 18 C 0.336 3.664 19 O -0.410 6.410 20 O -0.643 6.643 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.164 0.836 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.225 0.775 32 H 0.244 0.756 33 H 0.196 0.804 34 H 0.174 0.826 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.334 -5.437 2.972 11.203 hybrid contribution -1.826 1.514 -0.981 2.567 sum 7.507 -3.923 1.991 8.701 Atomic orbital electron populations 1.21874 0.92037 1.03031 1.01492 1.20556 0.96616 0.90483 0.91222 1.30406 0.92682 0.98948 1.02581 1.68073 1.11307 1.14673 1.32048 0.85284 0.81875 0.76653 0.77451 1.15688 1.20025 1.16272 1.61883 1.10418 1.13976 1.39136 1.22932 0.86993 1.02886 1.02682 1.21086 1.03926 0.87375 0.90843 1.20228 0.92167 1.02849 0.97744 1.17143 0.85562 0.99037 0.85972 1.91638 1.69514 1.94089 1.53420 1.22227 1.03755 0.98168 0.89164 1.21747 0.86335 0.93526 1.01547 1.22223 0.97657 0.96714 0.97090 1.28197 0.54185 0.89773 0.94251 1.93541 1.33453 1.65612 1.48406 1.93483 1.36369 1.67076 1.67356 0.91275 0.91253 0.91685 0.91560 0.83594 0.93195 0.91126 0.90292 0.91335 0.86828 0.77487 0.75579 0.80441 0.82553 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.44 7.74 71.98 0.56 0.11 16 2 C 0.12 0.36 2.37 44.17 0.10 0.47 16 3 C 0.00 0.01 4.36 88.67 0.39 0.39 16 4 N -0.65 -3.05 13.82 24.11 0.33 -2.72 16 5 Si 0.97 3.42 25.55 68.60 1.75 5.17 16 6 H -0.23 -0.33 6.38 99.48 0.63 0.30 16 7 H -0.27 -1.38 7.11 99.48 0.71 -0.67 16 8 H -0.24 -1.92 7.11 99.48 0.71 -1.22 16 9 N -0.53 -1.17 3.06 -906.05 -2.77 -3.94 16 10 C -0.01 0.01 7.26 127.69 0.93 0.93 16 11 C 0.09 0.07 3.79 85.56 0.32 0.40 16 12 C -0.13 0.26 4.74 -19.60 -0.09 0.17 16 13 C 0.14 -1.17 5.94 22.34 0.13 -1.03 16 14 F -0.11 0.70 15.00 44.97 0.67 1.37 16 15 C -0.12 1.78 10.02 22.37 0.22 2.01 16 16 C -0.01 0.23 10.03 22.23 0.22 0.46 16 17 C -0.12 0.73 9.80 22.49 0.22 0.95 16 18 C 0.35 0.65 9.59 22.82 0.22 0.86 16 19 O -0.58 -6.39 10.86 -127.47 -1.38 -7.77 16 20 O -0.82 -17.37 17.46 -127.47 -2.23 -19.59 16 21 H 0.07 0.22 6.14 -2.38 -0.01 0.21 16 22 H 0.07 0.39 6.42 -2.39 -0.02 0.38 16 23 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.35 0.56 8.23 -92.71 -0.76 -0.21 16 26 H 0.05 -0.12 7.52 -2.38 -0.02 -0.14 16 27 H 0.07 -0.03 3.71 -2.39 -0.01 -0.03 16 28 H 0.08 -0.24 6.51 -2.39 -0.02 -0.26 16 29 H 0.07 -0.13 7.61 -2.38 -0.02 -0.15 16 30 H 0.11 0.49 4.13 -2.39 -0.01 0.48 16 31 H 0.21 -4.61 8.06 -2.91 -0.02 -4.64 16 32 H 0.23 -5.60 8.06 -2.91 -0.02 -5.62 16 33 H 0.18 -0.85 7.96 -2.91 -0.02 -0.87 16 34 H 0.34 3.03 8.70 -74.06 -0.64 2.38 16 35 H 0.32 5.87 8.90 -74.06 -0.66 5.21 16 Total: 0.00 -25.60 290.21 -0.62 -26.22 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -0.23 Total: -4.46 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 3.23 Total: 5.72 kcal Atomic # 7 Polarization: -4.22 SS G_CDS: -2.43 Total: -6.66 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -3.61 Total: -27.37 kcal Atomic # 9 Polarization: 0.70 SS G_CDS: 0.67 Total: 1.37 kcal Atomic # 14 Polarization: 3.42 SS G_CDS: 1.75 Total: 5.17 kcal Total: -25.60 -0.62 -26.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232759510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.951 kcal (2) G-P(sol) polarization free energy of solvation -25.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds