Wall clock time and date at job start Mon Mar 30 2020 00:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46843 * 2 1 4 4 N 1.30178 * 126.80496 * 270.16697 * 3 2 1 5 5 O 1.20917 * 111.60401 * 180.25213 * 4 3 2 6 6 C 1.34041 * 111.57046 * 359.74477 * 5 4 3 7 7 C 1.50696 * 126.77747 * 179.97438 * 6 5 4 8 8 C 1.35455 * 106.44326 * 0.02562 * 6 5 4 9 9 C 1.50703 * 128.00371 * 179.97438 * 8 6 5 10 10 O 1.45197 * 109.46840 * 90.02381 * 9 8 6 11 11 C 1.34230 * 116.99857 * 179.97438 * 10 9 8 12 12 O 1.20826 * 119.99725 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00143 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47088 * 59.99571 * 13 11 10 15 15 C 1.53005 * 109.46654 * 300.00014 * 13 11 10 16 16 C 1.50701 * 109.47151 * 180.02562 * 13 11 10 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 13 11 18 18 C 1.37871 * 119.99694 * 180.27762 * 16 13 11 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 13 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 13 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 H 1.09001 * 109.47488 * 59.99892 * 1 2 3 25 25 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47341 * 299.99844 * 1 2 3 27 27 H 1.08998 * 109.46915 * 240.00479 * 2 1 3 28 28 H 1.08993 * 109.47199 * 120.00036 * 2 1 3 29 29 H 1.09006 * 109.47264 * 269.99926 * 7 6 5 30 30 H 1.09002 * 109.47428 * 29.99748 * 7 6 5 31 31 H 1.09001 * 109.46958 * 150.00204 * 7 6 5 32 32 H 1.09002 * 109.47192 * 330.02631 * 9 8 6 33 33 H 1.08997 * 109.46933 * 210.02106 * 9 8 6 34 34 H 1.09004 * 109.46658 * 179.97438 * 15 13 11 35 35 H 1.08995 * 109.47438 * 299.99560 * 15 13 11 36 36 H 1.08996 * 109.47069 * 60.00420 * 15 13 11 37 37 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2893 2.1572 -1.0423 5 8 2.6838 3.2554 -0.7253 6 6 2.7356 3.3948 0.6069 7 6 3.1759 4.6176 1.3696 8 6 2.3151 2.2192 1.1321 9 6 2.1842 1.8466 2.5864 10 8 0.8533 2.1884 3.0557 11 6 0.5719 1.9183 4.3400 12 8 1.4101 1.4133 5.0488 13 6 -0.7894 2.2447 4.8980 14 1 -1.5508 1.6987 4.3411 15 6 -1.0451 3.7480 4.7718 16 6 -0.8459 1.8462 6.3503 17 1 0.0176 1.4007 6.8219 18 6 -2.0018 2.0446 7.0751 19 7 -3.0533 2.5868 6.5007 20 14 -2.0743 1.5435 8.8731 21 1 -1.6415 2.6823 9.7223 22 1 -3.4661 1.1643 9.2256 23 1 -1.1729 0.3856 9.1011 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.2492 4.5650 1.5523 30 1 2.9500 5.5105 0.7865 31 1 2.6470 4.6619 2.3217 32 1 2.9262 2.3921 3.1695 33 1 2.3465 0.7751 2.7030 34 1 -2.0300 3.9840 5.1750 35 1 -0.2838 4.2941 5.3287 36 1 -1.0042 4.0365 3.7215 37 1 -3.8666 2.7261 7.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346787607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:45 Heat of formation + Delta-G solvation = -47.133950 kcal Electronic energy + Delta-G solvation = -20509.087207 eV Core-core repulsion = 17254.506552 eV Total energy + Delta-G solvation = -3254.580656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.97207 -39.62561 -36.36251 -35.26082 -33.92539 -33.76931 -31.36796 -30.67086 -28.68983 -26.78144 -25.23621 -24.36791 -23.11890 -21.41952 -19.98233 -19.83856 -17.68443 -17.14840 -16.71236 -16.06562 -15.76405 -15.54515 -14.75340 -14.45728 -14.16809 -13.62607 -13.37866 -13.34011 -12.89558 -12.84637 -12.52288 -12.46615 -11.94483 -11.60990 -11.55448 -11.43801 -11.08884 -10.86907 -10.79119 -10.72178 -10.39496 -10.11978 -10.10281 -9.99851 -9.42861 -9.08016 -9.02679 -8.47772 -6.13349 -4.19133 1.34599 2.04476 3.00442 3.24309 3.28644 3.34317 3.39615 3.68164 4.09995 4.36615 4.39800 4.71208 4.89334 5.05616 5.20071 5.23456 5.26811 5.28335 5.40071 5.43274 5.52667 5.72947 5.79036 5.84096 5.98685 6.04683 6.09945 6.26905 6.62523 6.82520 6.84038 7.15196 7.39591 7.70714 7.91135 8.10478 8.22496 8.79039 8.90202 9.46737 10.94003 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.004570 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.192410 B = 6125.906434 C = 6474.001534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.043 3.957 4 N -0.369 5.369 5 O 0.094 5.906 6 C -0.006 4.006 7 C -0.078 4.078 8 C -0.203 4.203 9 C 0.142 3.858 10 O -0.360 6.360 11 C 0.466 3.534 12 O -0.516 6.516 13 C 0.058 3.942 14 H 0.064 0.936 15 C -0.133 4.133 16 C -0.513 4.513 17 H 0.076 0.924 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.031 0.969 36 H 0.023 0.977 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 1.081 -11.565 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 C -0.116 4.116 4 N -0.075 5.075 5 O 0.032 5.968 6 C -0.070 4.070 7 C -0.136 4.136 8 C -0.207 4.207 9 C 0.067 3.933 10 O -0.279 6.279 11 C 0.310 3.690 12 O -0.403 6.403 13 C 0.040 3.960 14 H 0.082 0.918 15 C -0.191 4.191 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.329 0.793 -12.654 15.741 hybrid contribution 0.030 -0.379 1.691 1.733 sum 9.358 0.414 -10.962 14.420 Atomic orbital electron populations 1.21739 0.93362 1.02465 1.03092 1.19975 0.97044 0.87885 1.03549 1.23447 1.00674 0.99285 0.88204 1.73818 1.17322 0.92649 1.23741 1.84797 1.62636 1.27059 1.22342 1.24338 1.00729 0.98158 0.83777 1.20432 1.02474 0.91499 0.99154 1.20617 1.09286 0.94370 0.96431 1.20696 0.84561 1.00881 0.87120 1.86706 1.32744 1.77418 1.31021 1.25410 0.92512 0.73331 0.77725 1.90504 1.49742 1.40811 1.59274 1.18771 0.84412 0.96103 0.96755 0.91838 1.21733 1.04314 0.95354 0.97696 1.21124 0.99632 1.41169 0.93183 0.90623 1.24933 0.95223 0.94857 0.98934 1.69876 1.02986 1.43505 1.36652 0.86382 0.77207 0.79089 0.84142 1.20510 1.21131 1.19667 0.92560 0.91603 0.91269 0.90185 0.89597 0.89255 0.89496 0.88479 0.90457 0.90458 0.88576 0.94966 0.95830 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.89 37.16 0.37 -1.44 16 2 C -0.05 -0.56 6.44 -27.88 -0.18 -0.74 16 3 C 0.04 0.62 6.58 -82.10 -0.54 0.08 16 4 N -0.37 -5.50 12.07 33.42 0.40 -5.10 16 5 O 0.09 1.30 11.20 17.17 0.19 1.49 16 6 C -0.01 -0.08 7.49 -35.30 -0.26 -0.34 16 7 C -0.08 -0.70 10.24 36.00 0.37 -0.33 16 8 C -0.20 -2.92 5.96 -104.42 -0.62 -3.54 16 9 C 0.14 2.22 5.71 36.01 0.21 2.43 16 10 O -0.36 -6.94 10.11 -39.26 -0.40 -7.34 16 11 C 0.47 10.54 7.25 36.01 0.26 10.80 16 12 O -0.52 -12.65 15.21 -18.75 -0.29 -12.93 16 13 C 0.06 1.45 2.74 -92.92 -0.25 1.20 16 14 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 15 C -0.13 -3.07 8.90 37.16 0.33 -2.74 16 16 C -0.51 -14.10 8.37 -34.44 -0.29 -14.39 16 17 H 0.08 2.16 6.76 -52.49 -0.35 1.81 16 18 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 19 N -0.89 -24.45 11.33 55.43 0.63 -23.82 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.96 7.65 -51.93 -0.40 0.56 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.94 8.06 -51.93 -0.42 0.53 16 32 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.08 1.17 7.64 -51.93 -0.40 0.78 16 34 H 0.10 2.41 6.08 -51.93 -0.32 2.09 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.02 0.47 8.11 -51.93 -0.42 0.05 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -30.30 321.48 -5.59 -35.88 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.24 Total: -1.69 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.71 Total: -7.43 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 1.03 Total: -28.92 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.49 Total: -18.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.30 -5.59 -35.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346787607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.254 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds