Wall clock time and date at job start Mon Mar 30 2020 00:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00324 * 2 1 4 4 H 1.48495 * 109.47489 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47322 * 300.00551 * 3 2 1 6 6 H 1.48504 * 109.47057 * 60.00091 * 3 2 1 7 7 C 1.37879 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99940 * 0.26986 * 7 2 1 10 10 O 1.42902 * 110.63986 * 300.42794 * 9 7 2 11 11 C 1.55157 * 110.72049 * 63.57047 * 9 7 2 12 12 C 1.55118 * 101.48681 * 153.73427 * 11 9 7 13 13 N 1.47437 * 104.94109 * 323.22407 * 12 11 9 14 14 C 1.34777 * 125.64426 * 203.96881 * 13 12 11 15 15 O 1.21616 * 119.99643 * 175.10591 * 14 13 12 16 16 C 1.47105 * 120.00309 * 355.10838 * 14 13 12 17 17 C 1.32083 * 118.87214 * 284.51216 * 16 14 13 18 18 C 1.50270 * 122.57673 * 180.37390 * 17 16 14 19 19 O 1.42899 * 110.08930 * 344.34709 * 18 17 16 20 20 C 1.43266 * 113.09957 * 50.53430 * 19 18 17 21 21 C 1.50415 * 118.87661 * 104.24271 * 16 14 13 22 22 C 1.47020 * 108.70294 * 24.00214 * 13 12 11 23 23 H 0.97003 * 119.99873 * 359.97438 * 1 2 3 24 24 H 0.96701 * 114.00110 * 59.29895 * 10 9 7 25 25 H 1.08997 * 111.00293 * 271.93991 * 11 9 7 26 26 H 1.09004 * 111.00329 * 35.78786 * 11 9 7 27 27 H 1.08993 * 110.41956 * 204.29642 * 12 11 9 28 28 H 1.08999 * 110.20832 * 82.04129 * 12 11 9 29 29 H 1.08006 * 118.71733 * 0.34612 * 17 16 14 30 30 H 1.08992 * 109.37264 * 104.53813 * 18 17 16 31 31 H 1.09005 * 109.36928 * 224.16165 * 18 17 16 32 32 H 1.09001 * 109.64051 * 50.84841 * 20 19 18 33 33 H 1.08998 * 109.64001 * 171.26603 * 20 19 18 34 34 H 1.08999 * 109.45247 * 283.37173 * 21 16 14 35 35 H 1.08990 * 109.45197 * 43.30895 * 21 16 14 36 36 H 1.09001 * 109.88094 * 239.52225 * 22 13 12 37 37 H 1.09000 * 109.88059 * 118.35847 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0073 10 8 0.4078 -2.6000 1.1421 11 6 0.4223 -2.6479 -1.3106 12 6 0.3269 -4.1906 -1.4416 13 7 1.6310 -4.6934 -0.9722 14 6 2.1848 -5.8750 -1.3095 15 8 3.3079 -6.1497 -0.9325 16 6 1.4308 -6.8322 -2.1335 17 6 0.4561 -7.5262 -1.5741 18 6 -0.3615 -8.5314 -2.3351 19 8 -0.1823 -8.3467 -3.7407 20 6 1.1956 -8.2864 -4.1286 21 6 1.7921 -6.9828 -3.5859 22 6 2.2268 -3.6928 -0.0749 23 1 -0.4850 0.8401 0.0004 24 1 -0.2491 -1.8937 1.2112 25 1 -0.5653 -2.2007 -1.1988 26 1 0.9508 -2.2168 -2.1609 27 1 0.1626 -4.4746 -2.4810 28 1 -0.4761 -4.5730 -0.8115 29 1 0.2385 -7.3653 -0.5285 30 1 -0.0455 -9.5375 -2.0596 31 1 -1.4149 -8.4042 -2.0853 32 1 1.7310 -9.1398 -3.7124 33 1 1.2711 -8.3012 -5.2158 34 1 1.3964 -6.1369 -4.1479 35 1 2.8767 -7.0115 -3.6890 36 1 3.1874 -3.3642 -0.4717 37 1 2.3604 -4.1192 0.9193 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349455607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:29 Heat of formation + Delta-G solvation = -113.437018 kcal Electronic energy + Delta-G solvation = -20922.658595 eV Core-core repulsion = 17665.202823 eV Total energy + Delta-G solvation = -3257.455772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.07254 -38.82211 -37.24249 -34.38970 -33.69631 -32.22211 -31.25919 -29.73290 -28.41121 -26.37456 -24.78665 -23.98680 -22.48505 -20.37847 -19.46889 -18.16987 -17.33512 -16.95272 -16.48955 -15.74721 -15.31633 -15.06998 -14.93300 -14.49999 -14.16141 -13.92007 -13.38616 -13.04133 -12.77576 -12.73945 -12.23164 -12.06767 -11.67262 -11.57144 -11.40537 -11.38413 -10.97042 -10.92370 -10.63434 -10.48789 -10.16818 -10.13382 -9.52179 -9.31901 -9.03031 -8.70715 -8.25373 -8.07886 -6.32701 -4.40022 1.72895 2.93428 3.16871 3.26040 3.30655 3.46958 3.75132 4.24324 4.63947 4.65695 4.81534 4.94970 5.05974 5.12288 5.24702 5.38034 5.50046 5.54657 5.55516 5.74164 5.77675 5.90182 6.00113 6.14684 6.25457 6.39435 6.51471 6.64641 6.86869 6.91557 6.91927 7.25813 7.30693 7.70054 7.96982 8.02430 8.50610 8.62971 9.27440 9.37700 10.75175 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.035119 B = 0.004688 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.087545 B = 5970.826696 C = 6094.929373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.098 3.902 13 N -0.600 5.600 14 C 0.559 3.441 15 O -0.551 6.551 16 C -0.129 4.129 17 C -0.163 4.163 18 C 0.094 3.906 19 O -0.378 6.378 20 C 0.062 3.938 21 C -0.109 4.109 22 C 0.121 3.879 23 H 0.268 0.732 24 H 0.385 0.615 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -12.046 -6.741 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.174 4.174 12 C -0.024 4.024 13 N -0.332 5.332 14 C 0.346 3.654 15 O -0.431 6.431 16 C -0.132 4.132 17 C -0.182 4.182 18 C 0.017 3.983 19 O -0.297 6.297 20 C -0.015 4.015 21 C -0.147 4.147 22 C -0.001 4.001 23 H 0.078 0.922 24 H 0.236 0.764 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.956 -12.633 -6.572 14.373 hybrid contribution 0.258 1.538 0.186 1.571 sum -1.698 -11.094 -6.386 12.913 Atomic orbital electron populations 1.69649 1.05977 1.27632 1.50400 1.24986 0.95032 0.99566 0.93418 0.86349 0.80189 0.82649 0.77739 1.19568 1.20798 1.20717 1.21572 0.93767 0.90183 1.51803 0.91659 1.19459 0.86552 0.90689 0.82600 1.86108 1.51751 1.54767 1.46964 1.23348 1.02925 0.90151 1.00952 1.22521 0.84492 0.97436 0.97997 1.48684 1.21092 1.16909 1.46517 1.18127 0.85802 0.80925 0.80497 1.90778 1.18760 1.76938 1.56593 1.20864 0.97140 0.98764 0.96416 1.23318 0.95423 0.98330 1.01165 1.21453 1.00129 0.96268 0.80414 1.88113 1.25093 1.93935 1.22548 1.22686 0.82374 0.95964 1.00472 1.21005 1.02361 0.99852 0.91479 1.22124 0.97273 0.88183 0.92483 0.92176 0.76443 0.89357 0.91450 0.92063 0.91985 0.85990 0.91563 0.87321 0.92481 0.88117 0.89287 0.89268 0.90842 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.80 10.67 55.43 0.59 -22.21 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -13.93 8.21 -34.44 -0.28 -14.21 16 8 H 0.07 1.71 7.55 -52.49 -0.40 1.32 16 9 C 0.25 5.94 0.85 -89.93 -0.08 5.86 16 10 O -0.59 -14.63 13.08 -35.23 -0.46 -15.10 16 11 C -0.13 -2.91 5.58 -24.47 -0.14 -3.04 16 12 C 0.10 1.81 6.59 -2.41 -0.02 1.80 16 13 N -0.60 -12.10 3.33 -171.77 -0.57 -12.67 16 14 C 0.56 10.85 7.09 -12.66 -0.09 10.76 16 15 O -0.55 -12.48 17.44 5.26 0.09 -12.39 16 16 C -0.13 -1.95 4.58 -103.09 -0.47 -2.42 16 17 C -0.16 -2.13 9.62 -36.44 -0.35 -2.49 16 18 C 0.09 0.97 7.04 35.80 0.25 1.22 16 19 O -0.38 -4.45 10.83 -35.23 -0.38 -4.83 16 20 C 0.06 0.63 6.89 37.31 0.26 0.88 16 21 C -0.11 -1.36 6.09 -27.87 -0.17 -1.53 16 22 C 0.12 2.75 6.23 -3.07 -0.02 2.73 16 23 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 24 H 0.38 9.61 7.24 45.56 0.33 9.94 16 25 H 0.09 1.96 7.64 -51.93 -0.40 1.57 16 26 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 27 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.12 1.61 7.99 -52.48 -0.42 1.19 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.70 7.64 -51.93 -0.40 1.31 16 37 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -29.22 307.44 -6.93 -36.15 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.61 Total: 10.01 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.20 Total: 1.32 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.02 Total: -34.88 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.75 Total: -32.32 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.22 -6.93 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349455607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.290 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds