Wall clock time and date at job start Mon Mar 30 2020 00:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47214 * 2 1 4 4 C 1.46897 * 110.99993 * 297.30374 * 3 2 1 5 5 C 1.50701 * 109.47389 * 288.64349 * 4 3 2 6 6 H 1.07997 * 119.99771 * 1.22905 * 5 4 3 7 7 C 1.37868 * 120.00006 * 181.22819 * 5 4 3 8 8 N 1.31516 * 120.00040 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00249 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47289 * 90.00126 * 9 7 5 11 11 H 1.48499 * 109.47587 * 210.00053 * 9 7 5 12 12 H 1.48498 * 109.47227 * 330.00431 * 9 7 5 13 13 C 1.46899 * 111.00012 * 61.26049 * 3 2 1 14 14 C 1.50703 * 109.47159 * 66.04414 * 13 3 2 15 15 C 1.35173 * 125.60824 * 89.99911 * 14 13 3 16 16 C 1.40306 * 107.12541 * 179.97438 * 15 14 13 17 17 C 1.50696 * 126.65008 * 179.97438 * 16 15 14 18 18 C 1.36650 * 106.70466 * 0.02562 * 16 15 14 19 19 C 1.46462 * 125.99503 * 180.02562 * 18 16 15 20 20 O 1.21622 * 120.00456 * 359.97438 * 19 18 16 21 21 O 1.34903 * 119.99790 * 179.97438 * 19 18 16 22 22 O 1.33909 * 125.60704 * 269.69555 * 14 13 3 23 23 H 1.08998 * 109.47473 * 59.48957 * 1 2 3 24 24 H 1.09000 * 109.47269 * 179.49385 * 1 2 3 25 25 H 1.08998 * 109.47098 * 299.49059 * 1 2 3 26 26 H 1.08999 * 109.46832 * 239.99597 * 2 1 3 27 27 H 1.08999 * 109.46988 * 120.00484 * 2 1 3 28 28 H 1.09004 * 109.47173 * 48.64814 * 4 3 2 29 29 H 1.09003 * 109.46877 * 168.64172 * 4 3 2 30 30 H 0.97005 * 120.00210 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46942 * 186.04556 * 13 3 2 32 32 H 1.08997 * 109.46913 * 306.04480 * 13 3 2 33 33 H 1.07992 * 126.43573 * 359.97438 * 15 14 13 34 34 H 1.09007 * 109.46988 * 90.00410 * 17 16 15 35 35 H 1.08999 * 109.47793 * 210.00386 * 17 16 15 36 36 H 1.09001 * 109.47300 * 330.01259 * 17 16 15 37 37 H 0.96701 * 117.00248 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6020 2.0909 -1.2186 5 6 2.3753 1.5588 -2.3976 6 1 3.0898 0.7608 -2.2590 7 6 2.1707 2.0905 -3.6530 8 7 2.8451 1.6257 -4.6819 9 14 0.9344 3.4702 -3.8929 10 1 1.6140 4.7793 -3.7210 11 1 0.3586 3.3870 -5.2591 12 1 -0.1523 3.3411 -2.8890 13 6 1.5734 2.1011 1.2025 14 6 2.2210 1.4918 2.4193 15 6 3.4037 1.8695 2.9537 16 6 3.6334 1.0503 4.0694 17 6 4.8268 1.0957 4.9884 18 6 2.5656 0.2024 4.1606 19 6 2.3731 -0.8330 5.1784 20 8 3.2100 -0.9965 6.0456 21 8 1.2674 -1.6055 5.1540 22 8 1.7165 0.4911 3.1523 23 1 -0.3634 0.5217 -0.8853 24 1 -0.3634 -1.0276 -0.0091 25 1 -0.3633 0.5059 0.8945 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5359 1.9337 -1.3824 29 1 1.7989 3.1571 -1.1063 30 1 2.7014 2.0001 -5.5652 31 1 1.8577 3.1506 1.1267 32 1 0.4898 2.0235 1.2903 33 1 4.0504 2.6543 2.5903 34 1 4.6278 1.7855 5.8086 35 1 5.0152 0.0996 5.3889 36 1 5.7008 1.4351 4.4324 37 1 1.1846 -2.2756 5.8462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:59 Heat of formation + Delta-G solvation = -92.527466 kcal Electronic energy + Delta-G solvation = -20422.991282 eV Core-core repulsion = 17166.442216 eV Total energy + Delta-G solvation = -3256.549066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.85645 -40.99979 -39.05259 -37.32414 -35.15774 -34.74066 -32.75215 -31.31115 -29.54693 -28.90304 -26.91782 -24.85186 -23.82204 -22.59575 -21.35239 -20.45567 -19.43214 -18.87310 -18.49484 -17.83918 -16.83123 -16.72368 -16.40515 -16.06385 -15.79523 -14.87879 -14.72116 -14.53501 -14.48559 -14.06276 -14.03558 -13.75077 -13.52135 -13.31550 -13.17017 -12.85102 -12.72458 -12.66331 -12.40620 -12.23216 -11.88874 -11.81181 -11.62770 -11.45475 -10.73446 -10.68432 -9.69883 -9.03911 -8.23585 -6.26875 -0.28436 1.16986 1.38927 1.39736 1.41291 1.51076 1.76723 2.21412 2.38436 3.09889 3.26829 3.51535 3.69811 4.06508 4.16613 4.22624 4.33916 4.37441 4.44858 4.55399 4.61218 4.72081 4.75705 4.76894 4.91491 5.04578 5.05689 5.11898 5.19866 5.27971 5.39142 5.49113 5.56495 5.88488 5.95394 6.26872 6.60930 6.79541 6.84930 7.35982 8.93376 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.004387 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.006498 B = 6380.802684 C = 6720.634902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 N -0.536 5.536 4 C 0.168 3.832 5 C -0.512 4.512 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.244 1.244 13 C 0.117 3.883 14 C 0.054 3.946 15 C -0.212 4.212 16 C -0.065 4.065 17 C -0.095 4.095 18 C -0.113 4.113 19 C 0.579 3.421 20 O -0.514 6.514 21 O -0.503 6.503 22 O -0.161 6.161 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.008 0.992 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.177 0.823 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -0.035 20.155 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.260 5.260 4 C 0.042 3.958 5 C -0.550 4.550 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.769 3.231 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.168 1.168 13 C -0.010 4.010 14 C 0.001 3.999 15 C -0.231 4.231 16 C -0.067 4.067 17 C -0.151 4.151 18 C -0.163 4.163 19 C 0.425 3.575 20 O -0.406 6.406 21 O -0.318 6.318 22 O -0.057 6.057 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.194 0.806 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -3.577 0.043 19.877 20.197 hybrid contribution -0.995 -0.172 -0.370 1.075 sum -4.572 -0.129 19.507 20.036 Atomic orbital electron populations 1.22285 0.97130 1.02827 1.01622 1.21933 0.93859 0.90066 1.00878 1.62103 1.59992 1.02569 1.01364 1.20045 0.94366 0.94394 0.86995 1.21211 1.22459 1.19406 0.91958 0.94906 1.25835 0.98054 0.99702 0.95366 1.70063 1.43962 1.44753 1.00482 0.85733 0.79891 0.79482 0.77948 1.18845 1.21375 1.16751 1.20875 0.98192 0.98162 0.83761 1.23007 0.94915 0.88273 0.93706 1.21754 0.98148 1.05461 0.97751 1.20999 0.95878 0.93071 0.96727 1.20538 0.93050 1.04051 0.97463 1.20655 0.95010 1.04806 0.95810 1.18690 0.79222 0.78489 0.81102 1.90941 1.44395 1.69177 1.36132 1.84654 1.41363 1.48334 1.57448 1.84080 1.43732 1.44273 1.33641 0.93063 0.91195 0.91731 0.92684 0.91868 0.97466 0.94355 0.92561 0.85704 0.91611 0.80571 0.89077 0.90577 0.89316 0.69874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 9.27 71.98 0.67 -5.10 16 2 C 0.06 2.28 5.74 86.30 0.50 2.78 16 3 N -0.54 -20.74 4.65 -905.39 -4.21 -24.95 16 4 C 0.17 7.42 3.66 85.56 0.31 7.73 16 5 C -0.51 -28.58 9.12 25.60 0.23 -28.35 16 6 H 0.03 2.09 7.68 -2.91 -0.02 2.07 16 7 C 0.01 0.41 5.47 84.65 0.46 0.88 16 8 N -0.95 -58.73 13.96 21.44 0.30 -58.43 16 9 Si 0.95 42.00 27.44 68.60 1.88 43.88 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.24 -9.82 6.58 99.48 0.65 -9.17 16 13 C 0.12 3.47 5.27 85.56 0.45 3.92 16 14 C 0.05 1.57 5.88 24.98 0.15 1.71 16 15 C -0.21 -5.57 10.72 22.07 0.24 -5.33 16 16 C -0.06 -1.66 6.20 -19.73 -0.12 -1.79 16 17 C -0.09 -1.91 9.82 71.23 0.70 -1.21 16 18 C -0.11 -3.16 7.18 24.04 0.17 -2.99 16 19 C 0.58 14.31 8.30 69.96 0.58 14.89 16 20 O -0.51 -13.64 15.53 19.44 0.30 -13.34 16 21 O -0.50 -9.57 13.44 -56.80 -0.76 -10.33 16 22 O -0.16 -4.83 10.03 -4.92 -0.05 -4.88 16 23 H 0.05 1.79 6.22 -2.39 -0.01 1.77 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.84 6.33 -2.39 -0.02 1.82 16 26 H 0.05 2.41 7.15 -2.39 -0.02 2.40 16 27 H 0.06 2.27 6.75 -2.39 -0.02 2.25 16 28 H 0.01 0.33 5.02 -2.38 -0.01 0.32 16 29 H 0.04 1.60 7.18 -2.39 -0.02 1.58 16 30 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 31 H 0.13 3.19 7.87 -2.39 -0.02 3.17 16 32 H 0.07 1.79 6.05 -2.39 -0.01 1.78 16 33 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.68 6.45 -2.39 -0.02 1.66 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.44 3.28 9.11 -74.06 -0.67 2.61 16 Total: -1.00 -69.86 309.07 2.17 -67.69 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.38 Total: 13.22 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.34 Total: -12.86 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.91 Total: -83.38 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.51 Total: -28.55 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.88 kcal Total: -69.86 2.17 -67.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.836 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds