Wall clock time and date at job start Mon Mar 30 2020 00:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35996 * 117.00316 * 2 1 4 4 C 1.38506 * 119.99544 * 359.97438 * 3 2 1 5 5 C 1.39054 * 119.99827 * 180.02562 * 4 3 2 6 6 N 1.39370 * 120.00038 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99749 * 0.02562 * 6 5 4 8 8 C 1.36847 * 119.99973 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00231 * 332.46627 * 8 6 5 10 10 C 1.38751 * 119.99531 * 152.45852 * 8 6 5 11 11 N 1.31622 * 119.99931 * 349.62413 * 10 8 6 12 12 Si 1.86795 * 119.99640 * 169.89613 * 10 8 6 13 13 H 1.48498 * 109.47285 * 59.99881 * 12 10 8 14 14 H 1.48500 * 109.47050 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47259 * 300.00203 * 12 10 8 16 16 C 1.39057 * 120.00566 * 0.25954 * 5 4 3 17 17 C 1.38520 * 119.99709 * 359.48684 * 16 5 4 18 18 O 1.35990 * 119.99932 * 180.25406 * 17 16 5 19 19 C 1.42904 * 116.99926 * 0.25544 * 18 17 16 20 20 C 1.39065 * 119.99979 * 180.02562 * 3 2 1 21 21 O 1.36117 * 120.00711 * 359.97438 * 20 3 2 22 22 C 1.42905 * 117.00228 * 89.99794 * 21 20 3 23 23 H 1.09008 * 109.47106 * 300.00203 * 1 2 3 24 24 H 1.09003 * 109.47211 * 59.99816 * 1 2 3 25 25 H 1.08997 * 109.47527 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00376 * 0.04858 * 4 3 2 27 27 H 1.08996 * 109.47242 * 275.19195 * 7 6 5 28 28 H 1.09003 * 109.46942 * 35.19174 * 7 6 5 29 29 H 1.08997 * 109.46785 * 155.19006 * 7 6 5 30 30 H 0.96998 * 119.99869 * 179.97438 * 11 10 8 31 31 H 1.07995 * 120.00486 * 179.73936 * 16 5 4 32 32 H 1.08996 * 109.47207 * 299.99796 * 19 18 17 33 33 H 1.08998 * 109.46921 * 60.00018 * 19 18 17 34 34 H 1.09000 * 109.47127 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46729 * 60.00384 * 22 21 20 36 36 H 1.08994 * 109.47251 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.47099 * 300.00448 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3733 -0.0005 5 6 1.9233 3.6123 -0.0011 6 7 1.1643 4.7811 -0.0022 7 6 -0.2988 4.7044 -0.0022 8 6 1.7855 6.0004 -0.0032 9 1 2.7696 6.1055 0.4291 10 6 1.1511 7.1017 -0.5599 11 7 0.0511 6.9410 -1.2645 12 14 1.8625 8.8116 -0.3155 13 1 3.2339 8.8629 -0.8827 14 1 1.0037 9.8081 -1.0046 15 1 1.9150 9.1232 1.1355 16 6 3.3119 3.6852 -0.0065 17 6 4.0665 2.5235 -0.0007 18 8 5.4245 2.5948 -0.0008 19 6 6.0056 3.9003 -0.0014 20 6 3.4351 1.2844 -0.0005 21 8 4.1766 0.1429 -0.0005 22 6 4.5295 -0.4016 -1.2738 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2135 2.3168 -0.0002 27 1 -0.6567 4.5916 -1.0255 28 1 -0.6176 3.8472 0.5909 29 1 -0.7104 5.6173 0.4282 30 1 -0.3926 7.7109 -1.6534 31 1 3.8022 4.6474 -0.0112 32 1 5.6839 4.4408 -0.8916 33 1 5.6840 4.4416 0.8883 34 1 7.0922 3.8144 -0.0019 35 1 5.1161 0.3287 -1.8312 36 1 5.1185 -1.3075 -1.1310 37 1 3.6233 -0.6408 -1.8304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049828069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:54 Heat of formation + Delta-G solvation = -66.205991 kcal Electronic energy + Delta-G solvation = -21067.684097 eV Core-core repulsion = 17812.276415 eV Total energy + Delta-G solvation = -3255.407681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89653 -38.31124 -37.31710 -36.82809 -34.26850 -31.79055 -29.02702 -28.64866 -27.57607 -26.54089 -26.18194 -25.65648 -23.41873 -21.11580 -20.54046 -18.20806 -17.46469 -16.41791 -16.08477 -15.55053 -15.52064 -15.48567 -14.95195 -14.39653 -14.27665 -13.96415 -13.89143 -13.59845 -13.34319 -12.69151 -12.22906 -11.81249 -11.67078 -11.36360 -11.27472 -11.18879 -11.13638 -10.97104 -10.91101 -10.59107 -10.40018 -10.32828 -10.05428 -9.18804 -9.08773 -8.23377 -7.36205 -6.70037 -6.42174 -3.96369 2.37780 2.38538 3.07307 3.09649 3.11051 3.50279 3.93282 4.27172 4.35873 4.76736 4.84737 5.02984 5.46830 5.53980 5.56846 5.65267 5.74300 5.85552 5.87812 5.94960 6.04250 6.09662 6.14710 6.23414 6.30740 6.48418 6.60055 6.74759 7.06919 7.16881 7.22173 7.29750 7.33392 7.72451 7.90833 8.00199 8.50565 8.62231 9.12780 9.45816 10.49229 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.006756 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.737028 B = 4143.483030 C = 5370.403529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.313 6.313 3 C 0.193 3.807 4 C -0.339 4.339 5 C 0.266 3.734 6 N -0.435 5.435 7 C 0.121 3.879 8 C -0.312 4.312 9 H 0.094 0.906 10 C 0.031 3.969 11 N -0.873 5.873 12 Si 0.928 3.072 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.315 4.315 17 C 0.190 3.810 18 O -0.313 6.313 19 C 0.030 3.970 20 C -0.089 4.089 21 O -0.309 6.309 22 C 0.032 3.968 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.271 0.729 31 H 0.129 0.871 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -6.147 0.668 6.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.146 3.854 4 C -0.364 4.364 5 C 0.145 3.855 6 N -0.119 5.119 7 C -0.023 4.023 8 C -0.440 4.440 9 H 0.112 0.888 10 C -0.174 4.174 11 N -0.508 5.508 12 Si 0.754 3.246 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.340 4.340 17 C 0.143 3.857 18 O -0.226 6.226 19 C -0.066 4.066 20 C -0.137 4.137 21 O -0.225 6.225 22 C -0.064 4.064 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.492 -6.133 0.698 6.657 hybrid contribution -0.206 1.512 -0.337 1.563 sum 2.286 -4.621 0.361 5.168 Atomic orbital electron populations 1.22941 0.79460 1.02672 1.01408 1.86051 1.20434 1.27309 1.88749 1.18455 0.90149 0.83517 0.93282 1.20211 0.98884 0.90520 1.26788 1.17361 0.90095 0.86036 0.92037 1.42598 1.04090 1.02317 1.62848 1.21447 0.80697 0.99669 1.00456 1.19515 1.03700 0.84164 1.36642 0.88801 1.25427 0.96629 1.00528 0.94797 1.70054 1.18345 1.31629 1.30804 0.85969 0.78993 0.80904 0.78762 1.19622 1.20676 1.19702 1.20309 0.92943 0.96671 1.24050 1.18549 0.81398 0.92507 0.93219 1.86039 1.17917 1.29937 1.88691 1.22961 0.97929 0.83934 1.01746 1.16278 0.85795 0.83761 1.27843 1.86207 1.70663 1.38720 1.26947 1.22870 0.98646 0.97621 0.87237 0.92938 0.92930 0.89139 0.86167 0.93043 0.95344 0.90904 0.91842 0.85283 0.92712 0.92766 0.89200 0.94748 0.90661 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -5.90 10.27 -34.40 -0.35 -6.25 16 3 C 0.19 4.07 6.69 -39.18 -0.26 3.81 16 4 C -0.34 -7.26 8.19 -39.18 -0.32 -7.58 16 5 C 0.27 6.22 6.52 -83.83 -0.55 5.68 16 6 N -0.43 -10.65 3.12 -120.51 -0.38 -11.02 16 7 C 0.12 2.70 8.31 59.85 0.50 3.20 16 8 C -0.31 -7.87 8.88 -15.12 -0.13 -8.00 16 9 H 0.09 2.30 6.33 -52.49 -0.33 1.97 16 10 C 0.03 0.77 5.07 -17.45 -0.09 0.68 16 11 N -0.87 -22.33 10.91 55.49 0.61 -21.72 16 12 Si 0.93 19.17 29.56 -169.99 -5.03 14.14 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 C -0.32 -7.08 8.25 -39.17 -0.32 -7.40 16 17 C 0.19 4.12 6.69 -39.17 -0.26 3.86 16 18 O -0.31 -6.13 10.27 -34.39 -0.35 -6.48 16 19 C 0.03 0.45 9.81 101.05 0.99 1.44 16 20 C -0.09 -1.95 5.75 -38.97 -0.22 -2.17 16 21 O -0.31 -6.49 9.98 -45.45 -0.45 -6.95 16 22 C 0.03 0.54 11.14 101.05 1.13 1.66 16 23 H 0.05 0.71 7.66 -51.92 -0.40 0.31 16 24 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.12 2.36 4.47 -52.49 -0.23 2.12 16 27 H 0.05 1.19 7.82 -51.93 -0.41 0.79 16 28 H 0.03 0.56 6.48 -51.93 -0.34 0.22 16 29 H 0.07 1.69 6.89 -51.93 -0.36 1.34 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.13 2.83 4.47 -52.49 -0.23 2.60 16 32 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 33 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -29.24 306.67 -4.63 -33.87 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.74 Total: 3.18 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 1.44 Total: -3.39 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.23 Total: -32.75 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.16 Total: -19.68 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.24 -4.63 -33.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049828069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.337 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds