Wall clock time and date at job start Mon Mar 30 2020 00:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35996 * 117.00316 * 2 1 4 4 C 1.38506 * 119.99544 * 359.97438 * 3 2 1 5 5 C 1.39054 * 119.99827 * 180.02562 * 4 3 2 6 6 N 1.39370 * 120.00038 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99749 * 0.02562 * 6 5 4 8 8 C 1.36847 * 119.99973 * 180.02562 * 6 5 4 9 9 H 1.07999 * 120.00231 * 332.46627 * 8 6 5 10 10 C 1.38751 * 119.99531 * 152.45852 * 8 6 5 11 11 N 1.31622 * 119.99931 * 349.62413 * 10 8 6 12 12 Si 1.86795 * 119.99640 * 169.89613 * 10 8 6 13 13 H 1.48498 * 109.47285 * 59.99881 * 12 10 8 14 14 H 1.48500 * 109.47050 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47259 * 300.00203 * 12 10 8 16 16 C 1.39057 * 120.00566 * 0.25954 * 5 4 3 17 17 C 1.38520 * 119.99709 * 359.48684 * 16 5 4 18 18 O 1.35990 * 119.99932 * 180.25406 * 17 16 5 19 19 C 1.42904 * 116.99926 * 0.25544 * 18 17 16 20 20 C 1.39065 * 119.99979 * 180.02562 * 3 2 1 21 21 O 1.36117 * 120.00711 * 359.97438 * 20 3 2 22 22 C 1.42905 * 117.00228 * 89.99794 * 21 20 3 23 23 H 1.09008 * 109.47106 * 300.00203 * 1 2 3 24 24 H 1.09003 * 109.47211 * 59.99816 * 1 2 3 25 25 H 1.08997 * 109.47527 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00376 * 0.04858 * 4 3 2 27 27 H 1.08996 * 109.47242 * 275.19195 * 7 6 5 28 28 H 1.09003 * 109.46942 * 35.19174 * 7 6 5 29 29 H 1.08997 * 109.46785 * 155.19006 * 7 6 5 30 30 H 0.96998 * 119.99869 * 179.97438 * 11 10 8 31 31 H 1.07995 * 120.00486 * 179.73936 * 16 5 4 32 32 H 1.08996 * 109.47207 * 299.99796 * 19 18 17 33 33 H 1.08998 * 109.46921 * 60.00018 * 19 18 17 34 34 H 1.09000 * 109.47127 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46729 * 60.00384 * 22 21 20 36 36 H 1.08994 * 109.47251 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.47099 * 300.00448 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3733 -0.0005 5 6 1.9233 3.6123 -0.0011 6 7 1.1643 4.7811 -0.0022 7 6 -0.2988 4.7044 -0.0022 8 6 1.7855 6.0004 -0.0032 9 1 2.7696 6.1055 0.4291 10 6 1.1511 7.1017 -0.5599 11 7 0.0511 6.9410 -1.2645 12 14 1.8625 8.8116 -0.3155 13 1 3.2339 8.8629 -0.8827 14 1 1.0037 9.8081 -1.0046 15 1 1.9150 9.1232 1.1355 16 6 3.3119 3.6852 -0.0065 17 6 4.0665 2.5235 -0.0007 18 8 5.4245 2.5948 -0.0008 19 6 6.0056 3.9003 -0.0014 20 6 3.4351 1.2844 -0.0005 21 8 4.1766 0.1429 -0.0005 22 6 4.5295 -0.4016 -1.2738 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2135 2.3168 -0.0002 27 1 -0.6567 4.5916 -1.0255 28 1 -0.6176 3.8472 0.5909 29 1 -0.7104 5.6173 0.4282 30 1 -0.3926 7.7109 -1.6534 31 1 3.8022 4.6474 -0.0112 32 1 5.6839 4.4408 -0.8916 33 1 5.6840 4.4416 0.8883 34 1 7.0922 3.8144 -0.0019 35 1 5.1161 0.3287 -1.8312 36 1 5.1185 -1.3075 -1.1310 37 1 3.6233 -0.6408 -1.8304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049828069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:53 Heat of formation + Delta-G solvation = -83.738472 kcal Electronic energy + Delta-G solvation = -21068.444362 eV Core-core repulsion = 17812.276415 eV Total energy + Delta-G solvation = -3256.167947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49666 -39.78708 -39.02048 -38.35358 -35.95255 -33.58043 -30.66842 -30.23387 -28.99289 -27.85559 -27.83034 -27.19436 -25.12156 -22.71870 -22.19754 -19.81976 -19.19485 -18.00600 -17.66578 -17.24292 -17.02651 -16.99914 -16.31539 -16.04348 -15.73742 -15.49940 -15.33471 -15.28498 -15.10479 -14.07522 -13.69480 -13.43497 -13.16301 -13.04540 -12.91921 -12.65771 -12.60633 -12.47534 -12.29789 -12.19807 -11.99340 -11.88711 -11.72877 -10.93240 -10.66173 -9.93298 -8.99873 -8.49788 -8.20868 -5.85436 0.69209 0.70686 1.41366 1.45557 1.51094 2.07243 2.23734 2.68704 2.87460 3.03192 3.10994 3.34815 4.30480 4.32613 4.37885 4.42458 4.43139 4.44553 4.56786 4.58025 4.64280 4.67392 4.75380 4.76483 4.76784 4.89336 4.92899 4.99295 5.26430 5.34526 5.51484 5.60144 5.66049 5.98381 6.28875 6.47106 6.69221 7.02041 7.33570 7.63991 8.66634 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.006756 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.737028 B = 4143.483030 C = 5370.403529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.321 6.321 3 C 0.193 3.807 4 C -0.340 4.340 5 C 0.249 3.751 6 N -0.459 5.459 7 C 0.134 3.866 8 C -0.332 4.332 9 H 0.092 0.908 10 C -0.011 4.011 11 N -0.903 5.903 12 Si 0.991 3.009 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.267 1.267 16 C -0.327 4.327 17 C 0.188 3.812 18 O -0.321 6.321 19 C 0.023 3.977 20 C -0.098 4.098 21 O -0.327 6.327 22 C 0.030 3.970 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.108 0.892 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -7.038 0.831 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.234 6.234 3 C 0.145 3.855 4 C -0.365 4.365 5 C 0.131 3.869 6 N -0.145 5.145 7 C -0.009 4.009 8 C -0.460 4.460 9 H 0.110 0.890 10 C -0.212 4.212 11 N -0.540 5.540 12 Si 0.814 3.186 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.192 1.192 16 C -0.352 4.352 17 C 0.141 3.859 18 O -0.234 6.234 19 C -0.071 4.071 20 C -0.145 4.145 21 O -0.243 6.243 22 C -0.065 4.065 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.145 0.855 26 H 0.153 0.847 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.052 0.948 36 H 0.126 0.874 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.265 -7.063 0.865 7.829 hybrid contribution -0.348 1.540 -0.395 1.627 sum 2.918 -5.524 0.470 6.264 Atomic orbital electron populations 1.23304 0.76863 1.05308 1.01848 1.86045 1.23045 1.26045 1.88292 1.18520 0.90199 0.84248 0.92507 1.20351 0.99733 0.89989 1.26390 1.17725 0.90677 0.86553 0.91990 1.42715 1.04588 1.02390 1.64843 1.21275 0.80094 0.99852 0.99703 1.19736 1.04061 0.85042 1.37167 0.89017 1.26211 0.96955 1.03693 0.94370 1.70159 1.19514 1.32375 1.31914 0.85013 0.78302 0.76544 0.78745 1.19118 1.20563 1.19161 1.20379 0.92927 0.97076 1.24796 1.18637 0.82389 0.92221 0.92685 1.86027 1.16714 1.32349 1.88325 1.23264 0.99889 0.82291 1.01668 1.16599 0.86509 0.84298 1.27129 1.86131 1.70593 1.38301 1.29279 1.23054 0.99162 0.98635 0.85638 0.92359 0.92570 0.85506 0.84693 0.94646 0.92910 0.92432 0.91925 0.85442 0.92944 0.92689 0.85336 0.94821 0.87402 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.32 -11.52 10.27 -79.48 -0.82 -12.34 16 3 C 0.19 7.95 6.69 22.53 0.15 8.10 16 4 C -0.34 -14.35 8.19 22.53 0.18 -14.16 16 5 C 0.25 11.74 6.52 38.34 0.25 11.99 16 6 N -0.46 -22.81 3.12 -535.17 -1.67 -24.48 16 7 C 0.13 6.09 8.31 127.77 1.06 7.15 16 8 C -0.33 -17.02 8.88 84.03 0.75 -16.28 16 9 H 0.09 4.58 6.33 -2.91 -0.02 4.56 16 10 C -0.01 -0.54 5.07 84.85 0.43 -0.11 16 11 N -0.90 -47.04 10.91 21.64 0.24 -46.80 16 12 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 13 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 14 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 15 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 16 C -0.33 -14.78 8.25 22.53 0.19 -14.60 16 17 C 0.19 8.07 6.69 22.54 0.15 8.22 16 18 O -0.32 -12.22 10.27 -79.40 -0.82 -13.04 16 19 C 0.02 0.68 9.81 113.37 1.11 1.79 16 20 C -0.10 -4.20 5.75 22.67 0.13 -4.07 16 21 O -0.33 -13.21 9.98 -70.66 -0.70 -13.91 16 22 C 0.03 0.95 11.14 113.37 1.26 2.21 16 23 H 0.06 1.44 7.66 -2.38 -0.02 1.42 16 24 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 25 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.14 5.15 4.47 -2.91 -0.01 5.14 16 27 H 0.04 1.68 7.82 -2.39 -0.02 1.66 16 28 H 0.05 2.06 6.48 -2.39 -0.02 2.04 16 29 H 0.06 2.74 6.89 -2.39 -0.02 2.72 16 30 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.13 5.68 4.47 -2.91 -0.01 5.67 16 32 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 33 H 0.05 1.59 7.67 -2.39 -0.02 1.57 16 34 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -62.70 306.67 6.12 -56.58 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.08 Total: 20.61 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 6.78 Total: -8.10 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -1.43 Total: -71.28 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -2.34 Total: -39.29 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -62.70 6.12 -56.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049828069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.157 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds