Wall clock time and date at job start Mon Mar 30 2020 00:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47346 * 2 1 4 4 C 1.46899 * 110.99942 * 288.72455 * 3 2 1 5 5 C 1.50706 * 109.47068 * 160.34108 * 4 3 2 6 6 H 1.07995 * 119.99850 * 4.68331 * 5 4 3 7 7 C 1.37878 * 120.00140 * 184.67708 * 5 4 3 8 8 N 1.31516 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00208 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47187 * 120.00397 * 9 7 5 12 12 H 1.48503 * 109.47291 * 240.00518 * 9 7 5 13 13 C 1.46894 * 111.00117 * 164.77197 * 3 2 1 14 14 C 1.50705 * 109.47112 * 293.95397 * 13 3 2 15 15 O 1.33625 * 125.80834 * 270.26917 * 14 13 3 16 16 C 1.34216 * 110.92640 * 180.15850 * 15 14 13 17 17 C 1.34166 * 109.14321 * 359.60667 * 16 15 14 18 18 C 1.36493 * 125.80633 * 89.99789 * 14 13 3 19 19 C 1.47235 * 127.20379 * 359.97438 * 18 14 13 20 20 O 1.21534 * 119.99917 * 0.02562 * 19 18 14 21 21 O 1.34770 * 119.99884 * 179.97438 * 19 18 14 22 22 C 1.45199 * 116.99935 * 179.97438 * 21 19 18 23 23 H 1.09007 * 109.46939 * 299.07846 * 1 2 3 24 24 H 1.09003 * 109.47399 * 59.07199 * 1 2 3 25 25 H 1.08994 * 109.47529 * 179.07870 * 1 2 3 26 26 H 1.09002 * 109.46867 * 240.00436 * 2 1 3 27 27 H 1.08997 * 109.47526 * 120.00111 * 2 1 3 28 28 H 1.08998 * 109.47127 * 280.34311 * 4 3 2 29 29 H 1.09005 * 109.47131 * 40.34435 * 4 3 2 30 30 H 0.97001 * 120.00219 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47256 * 173.95331 * 13 3 2 32 32 H 1.09002 * 109.47475 * 53.95497 * 13 3 2 33 33 H 1.07999 * 125.43005 * 179.87853 * 16 15 14 34 34 H 1.07996 * 127.02586 * 180.24873 * 17 16 15 35 35 H 1.09002 * 109.47463 * 180.02562 * 22 21 19 36 36 H 1.09002 * 109.47056 * 300.00111 * 22 21 19 37 37 H 1.09007 * 109.47097 * 60.00028 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7801 2.0281 -1.2988 5 6 1.8329 3.5253 -1.1354 6 1 2.0996 3.9552 -0.1813 7 6 1.5409 4.3462 -2.2040 8 7 1.2157 3.8226 -3.3658 9 14 1.6070 6.2019 -2.0017 10 1 1.9963 6.5343 -0.6076 11 1 2.6073 6.7671 -2.9425 12 1 0.2706 6.7798 -2.2940 13 6 3.4427 1.4402 0.3602 14 6 3.6163 0.9985 1.7906 15 8 3.5778 1.7930 2.8643 16 6 3.7715 1.0878 3.9897 17 6 3.9356 -0.2062 3.6753 18 6 3.8345 -0.2819 2.2101 19 6 3.9450 -1.4869 1.3713 20 8 3.8398 -1.3985 0.1638 21 8 4.1639 -2.6877 1.9426 22 6 4.2612 -3.8323 1.0544 23 1 -0.3633 0.4995 0.8982 24 1 -0.3634 0.5282 -0.8816 25 1 -0.3634 -1.0275 -0.0165 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5461 1.7126 -2.0072 29 1 0.7980 1.7378 -1.6724 30 1 1.0099 4.4000 -4.1175 31 1 3.8064 2.4617 0.2487 32 1 4.0095 0.7792 -0.2955 33 1 3.7880 1.4961 4.9894 34 1 4.1066 -1.0248 4.3586 35 1 4.4373 -4.7338 1.6413 36 1 3.3312 -3.9388 0.4958 37 1 5.0876 -3.6836 0.3593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:02 Heat of formation + Delta-G solvation = -61.546516 kcal Electronic energy + Delta-G solvation = -20925.486905 eV Core-core repulsion = 17670.281273 eV Total energy + Delta-G solvation = -3255.205631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.48317 -40.03684 -37.15263 -36.10878 -32.94121 -32.56217 -31.19216 -29.54260 -28.07289 -26.81016 -24.89214 -23.31137 -22.55105 -21.39585 -19.96868 -19.56182 -17.86403 -16.82037 -16.68594 -16.25382 -15.82262 -15.70114 -14.80572 -14.58176 -14.04054 -13.81298 -13.55089 -13.19619 -13.11685 -12.94694 -12.64837 -12.14200 -12.04636 -11.57166 -11.31371 -11.10754 -10.90182 -10.83156 -10.64222 -10.56832 -10.34793 -10.23180 -9.76921 -9.65828 -9.21843 -8.54240 -8.39581 -7.28190 -5.99818 -4.01182 1.34705 2.07970 2.66282 3.11314 3.19071 3.33312 3.40737 3.46095 4.45216 4.60337 4.86247 4.95982 5.05891 5.08538 5.14329 5.36328 5.38947 5.49133 5.69002 5.77481 5.92862 5.95501 6.11771 6.21004 6.28986 6.35323 6.45610 6.51171 6.66895 6.87846 7.14338 7.26363 7.36400 7.83537 7.90204 8.09525 8.16830 8.53353 9.06472 9.62836 11.10728 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.005605 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.403127 B = 4994.132778 C = 5678.036021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.118 3.882 14 C 0.136 3.864 15 O -0.159 6.159 16 C -0.047 4.047 17 C -0.174 4.174 18 C -0.252 4.252 19 C 0.538 3.462 20 O -0.498 6.498 21 O -0.357 6.357 22 C 0.038 3.962 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.053 0.947 28 H -0.006 1.006 29 H 0.043 0.957 30 H 0.260 0.740 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.207 0.793 34 H 0.158 0.842 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 -11.696 12.901 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.253 5.253 4 C 0.068 3.932 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.010 4.010 14 C 0.082 3.918 15 O -0.053 6.053 16 C -0.113 4.113 17 C -0.193 4.193 18 C -0.256 4.256 19 C 0.384 3.616 20 O -0.387 6.387 21 O -0.274 6.274 22 C -0.056 4.056 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.223 0.777 34 H 0.176 0.824 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.406 -11.081 12.691 17.694 hybrid contribution 0.454 0.153 -0.527 0.712 sum 5.860 -10.928 12.164 17.370 Atomic orbital electron populations 1.21779 0.95800 0.99857 1.02774 1.22133 0.95320 0.90309 0.99844 1.62212 1.12299 1.15049 1.35694 1.19833 0.96929 0.94068 0.82398 1.21224 1.45916 0.90553 0.96784 0.91763 1.24980 0.95443 0.98974 0.95173 1.69970 1.47332 1.35123 1.01410 0.86457 0.77555 0.85352 0.78160 1.19613 1.21154 1.21062 1.20849 0.93141 1.03497 0.83468 1.23342 0.91764 0.87064 0.89670 1.83897 1.68836 1.38550 1.14002 1.23879 1.06506 0.90981 0.89968 1.22774 1.05929 0.97336 0.93257 1.20116 1.20344 0.91422 0.93698 1.19946 0.72927 0.82661 0.86107 1.90909 1.46457 1.86328 1.15041 1.86542 1.83203 1.16405 1.41248 1.23232 1.02591 0.85493 0.94296 0.92657 0.91875 0.93760 0.94717 0.92867 0.98857 0.93955 0.92990 0.87770 0.90390 0.77686 0.82447 0.88310 0.91819 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.98 37.15 0.37 -2.34 16 2 C 0.05 1.06 4.16 -3.83 -0.02 1.05 16 3 N -0.53 -11.89 4.38 -237.51 -1.04 -12.93 16 4 C 0.19 5.07 4.59 -4.97 -0.02 5.04 16 5 C -0.51 -14.25 8.61 -34.44 -0.30 -14.54 16 6 H 0.06 1.80 7.66 -52.49 -0.40 1.40 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.12 2.41 4.98 -4.98 -0.02 2.38 16 14 C 0.14 2.43 6.31 -34.94 -0.22 2.21 16 15 O -0.16 -2.59 10.52 7.72 0.08 -2.51 16 16 C -0.05 -0.58 12.03 29.30 0.35 -0.22 16 17 C -0.17 -2.21 11.05 -37.44 -0.41 -2.63 16 18 C -0.25 -4.08 5.39 -103.29 -0.56 -4.63 16 19 C 0.54 8.76 6.83 34.39 0.24 9.00 16 20 O -0.50 -9.23 12.05 -19.29 -0.23 -9.46 16 21 O -0.36 -4.86 10.48 -40.68 -0.43 -5.29 16 22 C 0.04 0.38 10.57 101.05 1.07 1.45 16 23 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 24 H 0.06 1.29 6.47 -51.93 -0.34 0.95 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.75 7.37 -51.93 -0.38 0.37 16 27 H 0.05 1.03 4.34 -51.93 -0.23 0.81 16 28 H -0.01 -0.18 8.00 -51.93 -0.42 -0.59 16 29 H 0.04 1.19 6.19 -51.93 -0.32 0.87 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.10 2.18 7.32 -51.93 -0.38 1.80 16 32 H 0.08 1.62 6.47 -51.93 -0.34 1.28 16 33 H 0.21 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -32.16 310.48 -5.74 -37.90 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.89 Total: -1.27 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.38 Total: -1.77 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.30 Total: -38.99 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.58 Total: -17.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.16 -5.74 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.649 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds