Wall clock time and date at job start Mon Mar 30 2020 00:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47346 * 2 1 4 4 C 1.46899 * 110.99942 * 288.72455 * 3 2 1 5 5 C 1.50706 * 109.47068 * 160.34108 * 4 3 2 6 6 H 1.07995 * 119.99850 * 4.68331 * 5 4 3 7 7 C 1.37878 * 120.00140 * 184.67708 * 5 4 3 8 8 N 1.31516 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00208 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47187 * 120.00397 * 9 7 5 12 12 H 1.48503 * 109.47291 * 240.00518 * 9 7 5 13 13 C 1.46894 * 111.00117 * 164.77197 * 3 2 1 14 14 C 1.50705 * 109.47112 * 293.95397 * 13 3 2 15 15 O 1.33625 * 125.80834 * 270.26917 * 14 13 3 16 16 C 1.34216 * 110.92640 * 180.15850 * 15 14 13 17 17 C 1.34166 * 109.14321 * 359.60667 * 16 15 14 18 18 C 1.36493 * 125.80633 * 89.99789 * 14 13 3 19 19 C 1.47235 * 127.20379 * 359.97438 * 18 14 13 20 20 O 1.21534 * 119.99917 * 0.02562 * 19 18 14 21 21 O 1.34770 * 119.99884 * 179.97438 * 19 18 14 22 22 C 1.45199 * 116.99935 * 179.97438 * 21 19 18 23 23 H 1.09007 * 109.46939 * 299.07846 * 1 2 3 24 24 H 1.09003 * 109.47399 * 59.07199 * 1 2 3 25 25 H 1.08994 * 109.47529 * 179.07870 * 1 2 3 26 26 H 1.09002 * 109.46867 * 240.00436 * 2 1 3 27 27 H 1.08997 * 109.47526 * 120.00111 * 2 1 3 28 28 H 1.08998 * 109.47127 * 280.34311 * 4 3 2 29 29 H 1.09005 * 109.47131 * 40.34435 * 4 3 2 30 30 H 0.97001 * 120.00219 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47256 * 173.95331 * 13 3 2 32 32 H 1.09002 * 109.47475 * 53.95497 * 13 3 2 33 33 H 1.07999 * 125.43005 * 179.87853 * 16 15 14 34 34 H 1.07996 * 127.02586 * 180.24873 * 17 16 15 35 35 H 1.09002 * 109.47463 * 180.02562 * 22 21 19 36 36 H 1.09002 * 109.47056 * 300.00111 * 22 21 19 37 37 H 1.09007 * 109.47097 * 60.00028 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7801 2.0281 -1.2988 5 6 1.8329 3.5253 -1.1354 6 1 2.0996 3.9552 -0.1813 7 6 1.5409 4.3462 -2.2040 8 7 1.2157 3.8226 -3.3658 9 14 1.6070 6.2019 -2.0017 10 1 1.9963 6.5343 -0.6076 11 1 2.6073 6.7671 -2.9425 12 1 0.2706 6.7798 -2.2940 13 6 3.4427 1.4402 0.3602 14 6 3.6163 0.9985 1.7906 15 8 3.5778 1.7930 2.8643 16 6 3.7715 1.0878 3.9897 17 6 3.9356 -0.2062 3.6753 18 6 3.8345 -0.2819 2.2101 19 6 3.9450 -1.4869 1.3713 20 8 3.8398 -1.3985 0.1638 21 8 4.1639 -2.6877 1.9426 22 6 4.2612 -3.8323 1.0544 23 1 -0.3633 0.4995 0.8982 24 1 -0.3634 0.5282 -0.8816 25 1 -0.3634 -1.0275 -0.0165 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5461 1.7126 -2.0072 29 1 0.7980 1.7378 -1.6724 30 1 1.0099 4.4000 -4.1175 31 1 3.8064 2.4617 0.2487 32 1 4.0095 0.7792 -0.2955 33 1 3.7880 1.4961 4.9894 34 1 4.1066 -1.0248 4.3586 35 1 4.4373 -4.7338 1.6413 36 1 3.3312 -3.9388 0.4958 37 1 5.0876 -3.6836 0.3593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:02 Heat of formation + Delta-G solvation = -83.068062 kcal Electronic energy + Delta-G solvation = -20926.420149 eV Core-core repulsion = 17670.281273 eV Total energy + Delta-G solvation = -3256.138876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.66082 -41.24061 -38.81946 -37.40558 -34.81376 -34.02983 -32.62850 -31.17011 -29.22925 -28.45726 -26.44461 -24.74723 -24.30858 -22.59397 -21.60663 -20.82850 -19.03030 -18.65483 -17.94542 -17.73975 -17.13788 -16.94231 -16.59339 -16.01980 -15.67031 -15.52798 -14.94662 -14.55096 -14.34762 -14.28429 -14.09150 -13.71842 -13.32138 -13.10671 -12.93661 -12.79182 -12.69765 -12.55626 -12.28046 -12.14929 -11.80773 -11.72647 -11.51624 -11.31475 -10.88399 -10.60340 -9.71600 -9.14069 -8.19162 -6.29548 0.03584 1.07454 1.42203 1.42635 1.53899 1.56861 1.95946 2.00451 2.41682 3.11020 3.25506 3.56112 3.72042 3.89660 4.11091 4.19690 4.31007 4.32786 4.38710 4.52615 4.60805 4.64368 4.68163 4.76212 4.84293 4.92238 4.95957 5.16436 5.22421 5.26948 5.30462 5.41192 5.65999 6.01367 6.06430 6.21852 6.50811 6.69275 6.84570 7.39654 8.91996 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.005605 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.403127 B = 4994.132778 C = 5678.036021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.531 5.531 4 C 0.208 3.792 5 C -0.521 4.521 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.125 3.875 14 C 0.101 3.899 15 O -0.175 6.175 16 C -0.029 4.029 17 C -0.174 4.174 18 C -0.252 4.252 19 C 0.535 3.465 20 O -0.530 6.530 21 O -0.352 6.352 22 C 0.030 3.970 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.016 0.984 27 H 0.067 0.933 28 H -0.038 1.038 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.257 0.743 34 H 0.191 0.809 35 H 0.139 0.861 36 H 0.059 0.941 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.089 -11.972 15.797 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 N -0.256 5.256 4 C 0.083 3.917 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.003 4.003 14 C 0.046 3.954 15 O -0.070 6.070 16 C -0.094 4.094 17 C -0.193 4.193 18 C -0.255 4.255 19 C 0.382 3.618 20 O -0.421 6.421 21 O -0.268 6.268 22 C -0.063 4.063 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.085 0.915 28 H -0.021 1.021 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.273 0.727 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.702 -11.387 15.615 20.150 hybrid contribution 0.420 0.093 -1.343 1.410 sum 6.122 -11.294 14.273 19.203 Atomic orbital electron populations 1.21742 0.94476 1.01599 1.01780 1.22128 0.96319 0.88961 0.99550 1.62168 1.14172 1.16248 1.32993 1.19463 0.94575 0.93998 0.83687 1.21467 1.46098 0.91457 0.96894 0.91913 1.25903 0.94725 1.04231 0.94643 1.70098 1.48003 1.37133 1.02299 0.85318 0.77813 0.78855 0.78535 1.18667 1.20402 1.20351 1.20545 0.91421 1.02300 0.86006 1.22635 0.95750 0.88050 0.88936 1.83864 1.69106 1.39293 1.14729 1.24935 1.03444 0.90732 0.90249 1.23128 1.05970 0.98709 0.91452 1.20386 1.18770 0.90564 0.95791 1.20128 0.72318 0.83619 0.85694 1.90905 1.47881 1.86909 1.16447 1.86530 1.82427 1.16182 1.41644 1.23586 1.02388 0.85433 0.94883 0.92209 0.94189 0.90623 0.96558 0.91483 1.02062 0.96201 0.92656 0.89417 0.91665 0.72718 0.79202 0.84259 0.92252 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.98 71.98 0.72 -4.52 16 2 C 0.06 2.45 4.16 86.30 0.36 2.81 16 3 N -0.53 -25.01 4.38 -905.36 -3.96 -28.98 16 4 C 0.21 11.64 4.59 85.56 0.39 12.03 16 5 C -0.52 -30.30 8.61 25.60 0.22 -30.08 16 6 H 0.06 3.59 7.66 -2.91 -0.02 3.57 16 7 C 0.00 0.17 5.46 84.65 0.46 0.63 16 8 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 9 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.12 5.35 4.98 85.56 0.43 5.78 16 14 C 0.10 3.58 6.31 25.28 0.16 3.74 16 15 O -0.18 -5.48 10.52 4.70 0.05 -5.43 16 16 C -0.03 -0.59 12.03 66.89 0.80 0.21 16 17 C -0.17 -3.83 11.05 23.66 0.26 -3.57 16 18 C -0.25 -7.84 5.39 -19.00 -0.10 -7.94 16 19 C 0.54 17.15 6.83 70.19 0.48 17.63 16 20 O -0.53 -20.11 12.05 19.73 0.24 -19.88 16 21 O -0.35 -8.90 10.48 -56.81 -0.60 -9.49 16 22 C 0.03 0.55 10.57 113.37 1.20 1.75 16 23 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 24 H 0.04 1.68 6.47 -2.39 -0.02 1.66 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.02 0.74 7.37 -2.39 -0.02 0.72 16 27 H 0.07 2.62 4.34 -2.39 -0.01 2.61 16 28 H -0.04 -2.33 8.00 -2.39 -0.02 -2.35 16 29 H 0.02 1.19 6.19 -2.38 -0.01 1.17 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.09 3.92 7.32 -2.39 -0.02 3.90 16 32 H 0.07 2.91 6.47 -2.39 -0.02 2.90 16 33 H 0.26 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -72.50 310.48 4.49 -68.01 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.07 Total: 7.24 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.38 Total: -1.52 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -3.68 Total: -85.95 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.31 Total: -34.79 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.50 4.49 -68.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.062 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds