Wall clock time and date at job start Mon Mar 30 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34897 * 116.99748 * 2 1 4 4 O 1.21613 * 120.00537 * 0.02562 * 3 2 1 5 5 C 1.46477 * 119.99631 * 179.97438 * 3 2 1 6 6 C 1.36646 * 125.99339 * 180.02562 * 5 3 2 7 7 C 1.40302 * 106.70095 * 180.26559 * 6 5 3 8 8 C 1.35173 * 107.12666 * 359.60845 * 7 6 5 9 9 C 1.50700 * 125.60995 * 180.10704 * 8 7 6 10 10 H 1.09000 * 109.47145 * 340.31210 * 9 8 7 11 11 C 1.53001 * 109.47084 * 100.30887 * 9 8 7 12 12 N 1.46895 * 109.47489 * 220.31478 * 9 8 7 13 13 C 1.46902 * 111.00346 * 56.04351 * 12 9 8 14 14 C 1.46895 * 111.00610 * 180.02562 * 12 9 8 15 15 C 1.50698 * 109.47788 * 169.99836 * 14 12 9 16 16 H 1.08001 * 119.99749 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00114 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00291 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47431 * 89.99856 * 19 17 15 21 21 H 1.48504 * 109.47030 * 209.99644 * 19 17 15 22 22 H 1.48498 * 109.47292 * 329.99622 * 19 17 15 23 23 O 1.33906 * 108.77985 * 0.39863 * 8 7 6 24 24 H 1.09000 * 109.47067 * 59.99413 * 1 2 3 25 25 H 1.08995 * 109.46881 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46785 * 299.99309 * 1 2 3 27 27 H 1.08002 * 126.64661 * 359.97438 * 6 5 3 28 28 H 1.07998 * 126.43730 * 179.72393 * 7 6 5 29 29 H 1.08993 * 109.47449 * 300.00397 * 11 9 8 30 30 H 1.09000 * 109.46866 * 60.00152 * 11 9 8 31 31 H 1.09005 * 109.46918 * 179.97438 * 11 9 8 32 32 H 1.09003 * 109.46850 * 59.99948 * 13 12 9 33 33 H 1.08994 * 109.47363 * 180.02562 * 13 12 9 34 34 H 1.08995 * 109.46876 * 300.00659 * 13 12 9 35 35 H 1.09001 * 109.47035 * 290.00088 * 14 12 9 36 36 H 1.09006 * 109.46851 * 49.99623 * 14 12 9 37 37 H 0.97004 * 120.00409 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2713 2.4247 0.0011 7 6 5.6179 2.0311 -0.0047 8 6 5.6376 0.6795 0.0003 9 6 6.8754 -0.1801 -0.0009 10 1 7.7245 0.4061 -0.3523 11 6 7.1522 -0.6776 1.4193 12 7 6.6722 -1.3301 -0.8918 13 6 6.3112 -0.8898 -2.2460 14 6 7.8610 -2.1927 -0.9177 15 6 7.5350 -3.4761 -1.6372 16 1 6.5437 -3.6353 -2.0351 17 6 8.5020 -4.4474 -1.7866 18 7 9.7090 -4.2538 -1.3017 19 14 8.0977 -6.0385 -2.6779 20 1 8.3847 -5.8813 -4.1264 21 1 8.9270 -7.1397 -2.1257 22 1 6.6600 -6.3595 -2.4901 23 8 4.3763 0.2300 0.0001 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.8955 3.4372 0.0008 28 1 6.4774 2.6850 -0.0101 29 1 7.3030 0.1757 2.0804 30 1 6.3031 -1.2639 1.7707 31 1 8.0473 -1.2997 1.4183 32 1 7.1110 -0.2703 -2.6519 33 1 6.1661 -1.7609 -2.8848 34 1 5.3883 -0.3113 -2.2059 35 1 8.6705 -1.6802 -1.4376 36 1 8.1695 -2.4169 0.1034 37 1 10.3895 -4.9371 -1.4072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091780207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:33 Heat of formation + Delta-G solvation = -59.492939 kcal Electronic energy + Delta-G solvation = -20336.803343 eV Core-core repulsion = 17081.686761 eV Total energy + Delta-G solvation = -3255.116582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.69125 -40.23756 -37.24885 -36.61385 -33.20778 -32.78659 -31.30928 -29.55350 -27.86197 -27.15128 -24.55502 -24.21153 -22.45746 -21.44957 -20.66318 -19.57147 -18.37063 -17.15152 -16.83211 -16.57038 -15.79492 -15.28129 -15.03445 -14.52136 -14.10435 -13.74741 -13.40819 -13.31171 -13.14045 -12.90444 -12.85060 -12.31922 -12.05596 -11.77396 -11.55651 -11.22105 -11.08717 -10.97088 -10.94931 -10.88478 -10.66676 -10.38823 -10.01712 -9.85500 -9.27239 -8.53580 -8.45540 -7.39840 -6.06703 -4.07455 0.85728 2.28689 2.30510 2.86477 3.03973 3.30537 3.37010 3.41913 4.36467 4.54170 4.70959 4.87597 4.93752 5.00468 5.02183 5.29659 5.34765 5.48822 5.53387 5.55853 5.75659 5.81366 5.95427 6.08895 6.13429 6.20543 6.25941 6.35465 6.59355 6.69139 6.94007 7.20931 7.23062 7.57424 7.73523 7.98688 8.08593 8.45009 8.99542 9.56680 11.04234 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.004599 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.513623 B = 6086.547420 C = 6910.491578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.344 6.344 3 C 0.558 3.442 4 O -0.498 6.498 5 C -0.090 4.090 6 C -0.097 4.097 7 C -0.242 4.242 8 C 0.080 3.920 9 C 0.146 3.854 10 H 0.069 0.931 11 C -0.145 4.145 12 N -0.532 5.532 13 C 0.036 3.964 14 C 0.188 3.812 15 C -0.507 4.507 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 O -0.125 6.125 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.161 0.839 28 H 0.158 0.842 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.080 0.920 34 H 0.043 0.957 35 H -0.007 1.007 36 H 0.041 0.959 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.137 11.322 3.570 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.260 6.260 3 C 0.403 3.597 4 O -0.389 6.389 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.261 4.261 8 C 0.025 3.975 9 C 0.037 3.963 10 H 0.086 0.914 11 C -0.202 4.202 12 N -0.257 5.257 13 C -0.112 4.112 14 C 0.064 3.936 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.197 1.197 23 O -0.019 6.019 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.178 0.822 28 H 0.176 0.824 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.011 0.989 36 H 0.059 0.941 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.699 10.903 3.777 16.432 hybrid contribution 0.412 -0.148 -0.856 0.961 sum -11.286 10.755 2.921 15.861 Atomic orbital electron populations 1.23339 0.75657 1.04119 1.02576 1.86730 1.23713 1.31711 1.83836 1.19213 0.85643 0.81986 0.72809 1.90911 1.64613 1.35963 1.47383 1.20610 0.87975 0.86698 1.18765 1.21873 0.92359 0.98455 0.99018 1.21575 0.97580 0.94270 1.12716 1.23313 0.84027 0.93510 0.96606 1.20408 0.87635 0.91388 0.96870 0.91356 1.21920 1.03899 1.01204 0.93174 1.62277 1.40409 1.14569 1.08475 1.22253 0.97821 1.00239 0.90927 1.19884 0.84663 0.91043 0.98017 1.21131 0.97595 1.00381 1.35460 0.91768 1.24961 0.94933 0.98665 0.95935 1.69944 1.02973 1.34847 1.46083 0.86495 0.78458 0.82855 0.79621 1.20753 1.21238 1.19727 1.84256 1.15103 1.33684 1.68848 0.91680 0.87676 0.91712 0.82185 0.82409 0.92618 0.91381 0.90088 0.96751 0.90138 0.93800 0.98890 0.94097 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.34 -4.85 10.58 -42.47 -0.45 -5.30 16 3 C 0.56 8.36 7.93 34.05 0.27 8.63 16 4 O -0.50 -7.78 16.66 -19.35 -0.32 -8.10 16 5 C -0.09 -1.39 7.18 -36.84 -0.26 -1.66 16 6 C -0.10 -1.29 10.62 -39.38 -0.42 -1.71 16 7 C -0.24 -3.22 10.76 -39.90 -0.43 -3.65 16 8 C 0.08 1.28 4.63 -35.40 -0.16 1.12 16 9 C 0.15 2.51 2.53 -68.87 -0.17 2.34 16 10 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 11 C -0.14 -2.31 8.97 37.16 0.33 -1.98 16 12 N -0.53 -11.22 4.60 -237.74 -1.09 -12.31 16 13 C 0.04 0.71 9.07 60.07 0.54 1.25 16 14 C 0.19 4.68 4.54 -4.98 -0.02 4.66 16 15 C -0.51 -13.91 8.46 -34.44 -0.29 -14.20 16 16 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 19 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 O -0.13 -2.18 10.18 4.78 0.05 -2.13 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.39 6.20 -51.93 -0.32 1.07 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 34 H 0.04 0.80 6.61 -51.93 -0.34 0.46 16 35 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 36 H 0.04 1.05 5.83 -51.93 -0.30 0.75 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -30.90 318.92 -5.99 -36.89 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.05 Total: -2.62 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.35 Total: -2.32 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.36 Total: -37.55 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.72 Total: -15.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.90 -5.99 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091780207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.603 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds