Wall clock time and date at job start Mon Mar 30 2020 00:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34897 * 116.99748 * 2 1 4 4 O 1.21613 * 120.00537 * 0.02562 * 3 2 1 5 5 C 1.46477 * 119.99631 * 179.97438 * 3 2 1 6 6 C 1.36646 * 125.99339 * 180.02562 * 5 3 2 7 7 C 1.40302 * 106.70095 * 180.26559 * 6 5 3 8 8 C 1.35173 * 107.12666 * 359.60845 * 7 6 5 9 9 C 1.50700 * 125.60995 * 180.10704 * 8 7 6 10 10 H 1.09000 * 109.47145 * 340.31210 * 9 8 7 11 11 C 1.53001 * 109.47084 * 100.30887 * 9 8 7 12 12 N 1.46895 * 109.47489 * 220.31478 * 9 8 7 13 13 C 1.46902 * 111.00346 * 56.04351 * 12 9 8 14 14 C 1.46895 * 111.00610 * 180.02562 * 12 9 8 15 15 C 1.50698 * 109.47788 * 169.99836 * 14 12 9 16 16 H 1.08001 * 119.99749 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00114 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00291 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99737 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47431 * 89.99856 * 19 17 15 21 21 H 1.48504 * 109.47030 * 209.99644 * 19 17 15 22 22 H 1.48498 * 109.47292 * 329.99622 * 19 17 15 23 23 O 1.33906 * 108.77985 * 0.39863 * 8 7 6 24 24 H 1.09000 * 109.47067 * 59.99413 * 1 2 3 25 25 H 1.08995 * 109.46881 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46785 * 299.99309 * 1 2 3 27 27 H 1.08002 * 126.64661 * 359.97438 * 6 5 3 28 28 H 1.07998 * 126.43730 * 179.72393 * 7 6 5 29 29 H 1.08993 * 109.47449 * 300.00397 * 11 9 8 30 30 H 1.09000 * 109.46866 * 60.00152 * 11 9 8 31 31 H 1.09005 * 109.46918 * 179.97438 * 11 9 8 32 32 H 1.09003 * 109.46850 * 59.99948 * 13 12 9 33 33 H 1.08994 * 109.47363 * 180.02562 * 13 12 9 34 34 H 1.08995 * 109.46876 * 300.00659 * 13 12 9 35 35 H 1.09001 * 109.47035 * 290.00088 * 14 12 9 36 36 H 1.09006 * 109.46851 * 49.99623 * 14 12 9 37 37 H 0.97004 * 120.00409 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2713 2.4247 0.0011 7 6 5.6179 2.0311 -0.0047 8 6 5.6376 0.6795 0.0003 9 6 6.8754 -0.1801 -0.0009 10 1 7.7245 0.4061 -0.3523 11 6 7.1522 -0.6776 1.4193 12 7 6.6722 -1.3301 -0.8918 13 6 6.3112 -0.8898 -2.2460 14 6 7.8610 -2.1927 -0.9177 15 6 7.5350 -3.4761 -1.6372 16 1 6.5437 -3.6353 -2.0351 17 6 8.5020 -4.4474 -1.7866 18 7 9.7090 -4.2538 -1.3017 19 14 8.0977 -6.0385 -2.6779 20 1 8.3847 -5.8813 -4.1264 21 1 8.9270 -7.1397 -2.1257 22 1 6.6600 -6.3595 -2.4901 23 8 4.3763 0.2300 0.0001 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.8955 3.4372 0.0008 28 1 6.4774 2.6850 -0.0101 29 1 7.3030 0.1757 2.0804 30 1 6.3031 -1.2639 1.7707 31 1 8.0473 -1.2997 1.4183 32 1 7.1110 -0.2703 -2.6519 33 1 6.1661 -1.7609 -2.8848 34 1 5.3883 -0.3113 -2.2059 35 1 8.6705 -1.6802 -1.4376 36 1 8.1695 -2.4169 0.1034 37 1 10.3895 -4.9371 -1.4072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091780207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:32 Heat of formation + Delta-G solvation = -79.078983 kcal Electronic energy + Delta-G solvation = -20337.652657 eV Core-core repulsion = 17081.686761 eV Total energy + Delta-G solvation = -3255.965896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.84973 -41.31804 -38.83033 -37.68959 -34.93298 -34.19820 -32.80538 -30.72636 -29.41578 -28.41585 -26.28776 -25.48778 -23.86963 -22.68948 -21.97956 -20.92537 -19.47798 -18.63862 -18.16191 -17.90976 -17.04249 -16.81801 -16.58545 -16.16228 -15.43434 -15.17823 -14.67759 -14.53890 -14.29309 -14.17391 -13.97917 -13.89216 -13.31087 -13.13948 -13.06606 -12.86956 -12.66474 -12.60810 -12.38067 -12.21957 -12.05550 -11.91481 -11.68485 -11.30439 -11.08781 -10.57368 -9.68892 -9.09058 -8.18784 -6.26905 -0.28105 1.17667 1.26851 1.42415 1.43411 1.54883 1.76898 1.96039 2.41753 3.10991 3.15316 3.46286 3.84897 3.87524 4.16899 4.20761 4.23003 4.31036 4.40579 4.48337 4.61191 4.63932 4.67260 4.78042 4.86219 4.91807 5.04714 5.08415 5.20596 5.24908 5.28485 5.34903 5.65512 5.83367 6.07080 6.27179 6.48555 6.58302 6.87295 7.41802 8.91929 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.004599 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.513623 B = 6086.547420 C = 6910.491578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.558 3.442 4 O -0.510 6.510 5 C -0.109 4.109 6 C -0.085 4.085 7 C -0.218 4.218 8 C 0.056 3.944 9 C 0.145 3.855 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.546 5.546 13 C 0.044 3.956 14 C 0.204 3.796 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.269 1.269 23 O -0.153 6.153 24 H 0.071 0.929 25 H 0.130 0.870 26 H 0.073 0.927 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.058 0.942 35 H -0.030 1.030 36 H 0.027 0.973 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 12.355 3.491 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.404 3.596 4 O -0.401 6.401 5 C -0.159 4.159 6 C -0.104 4.104 7 C -0.237 4.237 8 C 0.002 3.998 9 C 0.037 3.963 10 H 0.100 0.900 11 C -0.196 4.196 12 N -0.271 5.271 13 C -0.105 4.105 14 C 0.078 3.922 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.194 1.194 23 O -0.048 6.048 24 H 0.090 0.910 25 H 0.148 0.852 26 H 0.091 0.909 27 H 0.204 0.796 28 H 0.208 0.792 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.077 0.923 35 H -0.012 1.012 36 H 0.045 0.955 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.497 11.947 3.699 17.681 hybrid contribution 0.577 -0.409 -0.798 1.067 sum -11.920 11.538 2.901 16.841 Atomic orbital electron populations 1.23690 0.73343 1.06089 1.03326 1.86713 1.26145 1.31444 1.83508 1.19236 0.85676 0.82115 0.72553 1.90892 1.64833 1.36223 1.48185 1.20971 0.88263 0.87077 1.19610 1.22240 0.92027 0.99001 0.97181 1.21924 0.98598 0.93244 1.09940 1.23132 0.83247 0.94276 0.99133 1.20452 0.89167 0.90389 0.96317 0.90015 1.21871 1.02264 1.02075 0.93409 1.62126 1.38548 1.16675 1.09747 1.22151 0.98689 0.99552 0.90062 1.19525 0.85355 0.90889 0.96392 1.21439 0.97361 1.01730 1.35743 0.92457 1.25775 0.94754 1.01943 0.96631 1.70047 1.03843 1.36015 1.47158 0.85476 0.78278 0.78801 0.78631 1.19919 1.20659 1.19377 1.84206 1.15822 1.34958 1.69783 0.91047 0.85199 0.90868 0.79596 0.79249 0.89177 0.92771 0.91982 0.96020 0.92113 0.92323 1.01225 0.95461 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -9.97 10.58 -56.73 -0.60 -10.57 16 3 C 0.56 16.19 7.93 69.97 0.55 16.74 16 4 O -0.51 -15.23 16.66 19.47 0.32 -14.90 16 5 C -0.11 -3.23 7.18 24.05 0.17 -3.05 16 6 C -0.09 -2.02 10.62 22.40 0.24 -1.78 16 7 C -0.22 -5.10 10.76 22.07 0.24 -4.87 16 8 C 0.06 1.69 4.63 24.98 0.12 1.81 16 9 C 0.15 4.89 2.53 44.17 0.11 5.00 16 10 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 11 C -0.14 -4.38 8.97 71.98 0.65 -3.74 16 12 N -0.55 -23.24 4.60 -906.07 -4.17 -27.41 16 13 C 0.04 1.72 9.07 127.69 1.16 2.88 16 14 C 0.20 10.40 4.54 85.56 0.39 10.79 16 15 C -0.52 -29.31 8.46 25.60 0.22 -29.09 16 16 H 0.06 3.21 7.12 -2.91 -0.02 3.19 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 O -0.15 -5.19 10.18 -4.75 -0.05 -5.24 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 2.17 6.20 -2.38 -0.01 2.16 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 2.59 6.76 -2.39 -0.02 2.57 16 34 H 0.06 2.11 6.61 -2.39 -0.02 2.10 16 35 H -0.03 -1.63 8.12 -2.39 -0.02 -1.65 16 36 H 0.03 1.46 5.83 -2.38 -0.01 1.45 16 37 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -66.74 318.92 4.38 -62.36 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.07 Total: 6.69 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.50 Total: -2.75 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -3.89 Total: -81.57 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.32 Total: -30.71 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.74 4.38 -62.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091780207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.723 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds