Wall clock time and date at job start Mon Mar 30 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47267 * 2 1 4 4 C 1.46905 * 111.00207 * 287.87833 * 3 2 1 5 5 C 1.50703 * 109.46666 * 297.49633 * 4 3 2 6 6 H 1.07996 * 120.00419 * 4.44333 * 5 4 3 7 7 C 1.37882 * 119.99768 * 184.44327 * 5 4 3 8 8 N 1.31513 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47331 * 89.99590 * 9 7 5 11 11 H 1.48500 * 109.46880 * 209.99814 * 9 7 5 12 12 H 1.48497 * 109.46892 * 329.99497 * 9 7 5 13 13 C 1.46898 * 111.00268 * 163.92037 * 3 2 1 14 14 H 1.09004 * 109.47287 * 63.95706 * 13 3 2 15 15 C 1.53005 * 109.47392 * 183.95286 * 13 3 2 16 16 C 1.50695 * 109.47357 * 303.95439 * 13 3 2 17 17 C 1.35168 * 125.60866 * 139.99207 * 16 13 3 18 18 C 1.40320 * 107.12581 * 180.02562 * 17 16 13 19 19 C 1.36640 * 106.70097 * 0.02562 * 18 17 16 20 20 C 1.46472 * 125.99315 * 180.02562 * 19 18 17 21 21 O 1.21618 * 120.00080 * 0.02562 * 20 19 18 22 22 O 1.34901 * 119.99665 * 179.97438 * 20 19 18 23 23 O 1.33909 * 125.60916 * 320.02683 * 16 13 3 24 24 H 1.09008 * 109.46878 * 299.69603 * 1 2 3 25 25 H 1.09000 * 109.47301 * 59.69849 * 1 2 3 26 26 H 1.09003 * 109.47290 * 179.69692 * 1 2 3 27 27 H 1.09002 * 109.47193 * 240.00162 * 2 1 3 28 28 H 1.09000 * 109.47650 * 120.00066 * 2 1 3 29 29 H 1.08992 * 109.47035 * 57.49444 * 4 3 2 30 30 H 1.08997 * 109.47382 * 177.49797 * 4 3 2 31 31 H 0.97007 * 119.99664 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46925 * 300.00609 * 15 13 3 33 33 H 1.09004 * 109.46562 * 59.99975 * 15 13 3 34 34 H 1.08994 * 109.46953 * 180.02562 * 15 13 3 35 35 H 1.07999 * 126.43940 * 359.97438 * 17 16 13 36 36 H 1.07993 * 126.64791 * 180.02562 * 18 17 16 37 37 H 0.96702 * 116.99689 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7982 2.0217 -1.3052 5 6 2.5812 1.2862 -2.3621 6 1 3.1254 0.3895 -2.1050 7 6 2.6028 1.7581 -3.6575 8 7 1.9396 2.8498 -3.9707 9 14 3.5727 0.8460 -4.9678 10 1 2.7002 -0.1666 -5.6146 11 1 4.0529 1.8108 -5.9895 12 1 4.7362 0.1690 -4.3408 13 6 3.4375 1.4421 0.3798 14 1 4.0354 0.9220 -0.3686 15 6 3.8845 2.9029 0.4644 16 6 3.6254 0.7809 1.7209 17 6 4.6591 -0.0187 2.0663 18 6 4.4459 -0.4192 3.3941 19 6 3.2774 0.1632 3.7972 20 6 2.6577 0.0258 5.1172 21 8 3.1902 -0.6575 5.9708 22 8 1.4968 0.6580 5.3864 23 8 2.7954 0.8882 2.7662 24 1 -0.3633 0.5091 0.8928 25 1 -0.3634 0.5185 -0.8873 26 1 -0.3634 -1.0277 -0.0054 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7367 1.9883 -1.5503 30 1 2.1292 3.0594 -1.2641 31 1 1.9551 3.1820 -4.8820 32 1 3.7486 3.3812 -0.5056 33 1 3.2865 3.4230 1.2129 34 1 4.9366 2.9452 0.7458 35 1 5.4921 -0.2976 1.4380 36 1 5.0821 -1.0630 3.9832 37 1 1.1260 0.5370 6.2712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091781602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:11 Heat of formation + Delta-G solvation = -73.058986 kcal Electronic energy + Delta-G solvation = -20780.463411 eV Core-core repulsion = 17524.758561 eV Total energy + Delta-G solvation = -3255.704850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.63853 -39.96347 -37.54610 -36.25961 -33.16240 -32.72412 -32.11132 -29.82790 -28.21930 -26.47224 -24.74052 -23.17191 -21.91575 -21.35043 -20.53564 -19.33120 -18.41702 -17.60755 -16.52514 -16.46747 -15.70735 -15.23022 -15.00215 -14.39475 -13.84742 -13.53400 -13.48039 -13.11327 -13.09871 -12.82812 -12.34498 -12.15049 -11.74614 -11.65789 -11.30860 -11.10516 -11.08798 -10.86917 -10.85958 -10.75403 -10.31539 -10.10848 -10.02161 -9.94777 -9.63719 -8.52057 -8.43763 -7.32335 -6.11416 -4.21101 0.89106 2.36015 2.49403 2.90068 3.21665 3.29211 3.29602 3.30975 4.33033 4.61764 4.90715 4.94062 5.19853 5.21982 5.60407 5.70423 5.77113 5.81894 5.85401 5.97314 6.08084 6.13790 6.22047 6.26920 6.36408 6.48567 6.55264 6.72815 6.77978 6.86683 7.03625 7.20763 7.45924 7.73862 7.82336 7.91862 8.13211 8.18880 8.88069 9.46110 10.93481 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.030246 B = 0.004911 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.517788 B = 5700.174288 C = 5974.303852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 N -0.534 5.534 4 C 0.183 3.817 5 C -0.554 4.554 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.154 3.846 14 H 0.088 0.912 15 C -0.140 4.140 16 C 0.083 3.917 17 C -0.245 4.245 18 C -0.095 4.095 19 C -0.097 4.097 20 C 0.576 3.424 21 O -0.507 6.507 22 O -0.502 6.502 23 O -0.129 6.129 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -3.886 12.881 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 N -0.259 5.259 4 C 0.058 3.942 5 C -0.593 4.593 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.045 3.955 14 H 0.106 0.894 15 C -0.198 4.198 16 C 0.028 3.972 17 C -0.264 4.264 18 C -0.115 4.115 19 C -0.148 4.148 20 C 0.422 3.578 21 O -0.398 6.398 22 O -0.313 6.313 23 O -0.022 6.022 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.035 -3.437 12.944 13.546 hybrid contribution 0.900 -1.196 -0.889 1.740 sum 2.935 -4.633 12.055 13.244 Atomic orbital electron populations 1.21662 0.95658 1.00062 1.02221 1.21945 0.95806 0.90309 0.99461 1.62687 1.13069 1.16510 1.33604 1.19885 0.97407 0.95100 0.81795 1.21687 1.31766 1.11154 0.94714 0.92538 1.24921 0.95271 0.94767 0.98468 1.69935 1.41407 1.21607 1.19566 0.86677 0.80381 0.79710 0.81761 1.20623 1.21100 1.19937 1.20363 0.93489 0.96352 0.85304 0.89449 1.21840 0.99650 0.94207 1.04058 1.23623 0.88285 0.96007 0.89268 1.21618 1.02896 1.05201 0.96730 1.21888 0.94885 0.99166 0.95517 1.20513 0.98740 1.06837 0.88663 1.18892 0.78206 0.75777 0.84930 1.90968 1.63632 1.39121 1.46123 1.84732 1.37468 1.68376 1.40709 1.84247 1.44384 1.54938 1.18669 0.92985 0.91973 0.93719 0.93349 0.93631 0.94630 0.93995 0.92695 0.89627 0.92268 0.92918 0.82383 0.82266 0.72669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.97 37.15 0.37 -2.09 16 2 C 0.05 1.02 5.37 -3.83 -0.02 1.00 16 3 N -0.53 -10.88 4.52 -229.48 -1.04 -11.91 16 4 C 0.18 4.37 4.64 -4.97 -0.02 4.34 16 5 C -0.55 -14.10 7.42 -34.44 -0.26 -14.35 16 6 H 0.06 1.42 5.92 -52.49 -0.31 1.11 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 9 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.15 2.80 2.25 -68.87 -0.15 2.65 16 14 H 0.09 1.68 6.63 -51.93 -0.34 1.33 16 15 C -0.14 -2.39 8.94 37.16 0.33 -2.05 16 16 C 0.08 1.37 4.34 -35.40 -0.15 1.22 16 17 C -0.25 -3.49 10.76 -39.89 -0.43 -3.92 16 18 C -0.09 -1.30 10.62 -39.38 -0.42 -1.72 16 19 C -0.10 -1.48 7.18 -36.84 -0.26 -1.75 16 20 C 0.58 7.98 8.30 34.05 0.28 8.26 16 21 O -0.51 -7.64 17.65 -19.35 -0.34 -7.98 16 22 O -0.50 -5.71 13.44 -42.48 -0.57 -6.28 16 23 O -0.13 -2.21 10.39 4.74 0.05 -2.16 16 24 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 25 H 0.06 1.20 6.71 -51.93 -0.35 0.85 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.01 6.27 -51.93 -0.33 0.68 16 28 H 0.05 0.84 6.25 -51.93 -0.32 0.51 16 29 H 0.04 0.92 6.62 -51.93 -0.34 0.58 16 30 H 0.04 1.06 6.23 -51.93 -0.32 0.74 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 1.62 6.37 -51.93 -0.33 1.29 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.41 2.33 9.11 45.56 0.42 2.75 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -29.67 312.51 -6.22 -35.88 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.91 Total: 3.05 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.83 Total: -6.68 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.30 Total: -35.89 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.86 Total: -16.41 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.67 -6.22 -35.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091781602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.177 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds