Wall clock time and date at job start Mon Mar 30 2020 00:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47267 * 2 1 4 4 C 1.46905 * 111.00207 * 287.87833 * 3 2 1 5 5 C 1.50703 * 109.46666 * 297.49633 * 4 3 2 6 6 H 1.07996 * 120.00419 * 4.44333 * 5 4 3 7 7 C 1.37882 * 119.99768 * 184.44327 * 5 4 3 8 8 N 1.31513 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47331 * 89.99590 * 9 7 5 11 11 H 1.48500 * 109.46880 * 209.99814 * 9 7 5 12 12 H 1.48497 * 109.46892 * 329.99497 * 9 7 5 13 13 C 1.46898 * 111.00268 * 163.92037 * 3 2 1 14 14 H 1.09004 * 109.47287 * 63.95706 * 13 3 2 15 15 C 1.53005 * 109.47392 * 183.95286 * 13 3 2 16 16 C 1.50695 * 109.47357 * 303.95439 * 13 3 2 17 17 C 1.35168 * 125.60866 * 139.99207 * 16 13 3 18 18 C 1.40320 * 107.12581 * 180.02562 * 17 16 13 19 19 C 1.36640 * 106.70097 * 0.02562 * 18 17 16 20 20 C 1.46472 * 125.99315 * 180.02562 * 19 18 17 21 21 O 1.21618 * 120.00080 * 0.02562 * 20 19 18 22 22 O 1.34901 * 119.99665 * 179.97438 * 20 19 18 23 23 O 1.33909 * 125.60916 * 320.02683 * 16 13 3 24 24 H 1.09008 * 109.46878 * 299.69603 * 1 2 3 25 25 H 1.09000 * 109.47301 * 59.69849 * 1 2 3 26 26 H 1.09003 * 109.47290 * 179.69692 * 1 2 3 27 27 H 1.09002 * 109.47193 * 240.00162 * 2 1 3 28 28 H 1.09000 * 109.47650 * 120.00066 * 2 1 3 29 29 H 1.08992 * 109.47035 * 57.49444 * 4 3 2 30 30 H 1.08997 * 109.47382 * 177.49797 * 4 3 2 31 31 H 0.97007 * 119.99664 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46925 * 300.00609 * 15 13 3 33 33 H 1.09004 * 109.46562 * 59.99975 * 15 13 3 34 34 H 1.08994 * 109.46953 * 180.02562 * 15 13 3 35 35 H 1.07999 * 126.43940 * 359.97438 * 17 16 13 36 36 H 1.07993 * 126.64791 * 180.02562 * 18 17 16 37 37 H 0.96702 * 116.99689 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7982 2.0217 -1.3052 5 6 2.5812 1.2862 -2.3621 6 1 3.1254 0.3895 -2.1050 7 6 2.6028 1.7581 -3.6575 8 7 1.9396 2.8498 -3.9707 9 14 3.5727 0.8460 -4.9678 10 1 2.7002 -0.1666 -5.6146 11 1 4.0529 1.8108 -5.9895 12 1 4.7362 0.1690 -4.3408 13 6 3.4375 1.4421 0.3798 14 1 4.0354 0.9220 -0.3686 15 6 3.8845 2.9029 0.4644 16 6 3.6254 0.7809 1.7209 17 6 4.6591 -0.0187 2.0663 18 6 4.4459 -0.4192 3.3941 19 6 3.2774 0.1632 3.7972 20 6 2.6577 0.0258 5.1172 21 8 3.1902 -0.6575 5.9708 22 8 1.4968 0.6580 5.3864 23 8 2.7954 0.8882 2.7662 24 1 -0.3633 0.5091 0.8928 25 1 -0.3634 0.5185 -0.8873 26 1 -0.3634 -1.0277 -0.0054 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.7367 1.9883 -1.5503 30 1 2.1292 3.0594 -1.2641 31 1 1.9551 3.1820 -4.8820 32 1 3.7486 3.3812 -0.5056 33 1 3.2865 3.4230 1.2129 34 1 4.9366 2.9452 0.7458 35 1 5.4921 -0.2976 1.4380 36 1 5.0821 -1.0630 3.9832 37 1 1.1260 0.5370 6.2712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091781602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:10 Heat of formation + Delta-G solvation = -92.877663 kcal Electronic energy + Delta-G solvation = -20781.322813 eV Core-core repulsion = 17524.758561 eV Total energy + Delta-G solvation = -3256.564252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.82122 -40.99861 -39.15233 -37.24863 -34.77297 -34.25601 -33.53445 -31.25500 -29.70614 -28.19134 -26.15712 -24.74542 -23.24292 -22.58706 -21.85428 -20.83598 -19.48005 -18.75293 -18.29612 -17.73785 -17.12390 -16.85547 -16.25419 -16.07889 -15.17362 -14.92021 -14.80737 -14.63366 -14.15431 -14.05766 -13.94139 -13.68827 -13.25148 -13.05098 -12.72545 -12.63145 -12.60242 -12.45675 -12.29929 -12.10528 -12.08469 -11.82564 -11.77176 -11.44672 -11.07736 -10.54149 -9.65395 -9.04978 -8.11519 -6.29578 -0.23314 1.21234 1.39974 1.42214 1.42415 1.50745 1.82302 2.24503 2.40668 3.15208 3.15935 3.62399 3.87108 4.19163 4.22745 4.32993 4.38038 4.52400 4.57015 4.65186 4.73961 4.80757 4.87621 4.98987 5.09516 5.18938 5.24791 5.30528 5.31950 5.37538 5.38625 5.47101 5.82198 5.91727 6.06496 6.26028 6.49258 6.86126 6.89566 7.41470 8.91175 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.030246 B = 0.004911 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.517788 B = 5700.174288 C = 5974.303852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 N -0.537 5.537 4 C 0.199 3.801 5 C -0.553 4.553 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.155 3.845 14 H 0.078 0.922 15 C -0.133 4.133 16 C 0.059 3.941 17 C -0.228 4.228 18 C -0.087 4.087 19 C -0.110 4.110 20 C 0.583 3.417 21 O -0.522 6.522 22 O -0.502 6.502 23 O -0.149 6.149 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.009 0.991 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -5.367 13.986 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 N -0.261 5.261 4 C 0.073 3.927 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.188 1.188 13 C 0.047 3.953 14 H 0.095 0.905 15 C -0.191 4.191 16 C 0.005 3.995 17 C -0.247 4.247 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.429 3.571 21 O -0.414 6.414 22 O -0.316 6.316 23 O -0.043 6.043 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.199 0.801 36 H 0.202 0.798 37 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 3.213 -4.927 14.082 15.261 hybrid contribution 0.491 -0.736 -1.105 1.415 sum 3.704 -5.663 12.977 14.635 Atomic orbital electron populations 1.21617 0.94727 1.01419 1.01259 1.21946 0.96617 0.89446 0.99176 1.62606 1.15101 1.17175 1.31248 1.19506 0.95397 0.94355 0.83428 1.21922 1.31238 1.10957 0.95110 0.92276 1.25688 0.96283 0.95495 1.00644 1.70056 1.43037 1.23193 1.20012 0.85678 0.79232 0.78426 0.79104 1.20488 1.21021 1.18838 1.20264 0.91631 0.96988 0.86459 0.90461 1.21768 1.01357 0.93484 1.02473 1.23252 0.89669 0.97884 0.88741 1.21907 1.02363 1.03325 0.97082 1.22211 0.94475 0.98681 0.95285 1.20967 0.99464 1.06738 0.88839 1.18720 0.78548 0.75554 0.84326 1.90965 1.64216 1.39863 1.46368 1.84687 1.36461 1.67653 1.42813 1.84198 1.45093 1.55817 1.19233 0.92565 0.94223 0.91203 0.95064 0.92258 0.97332 0.95963 0.92721 0.92256 0.92436 0.90208 0.80129 0.79769 0.69868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.97 71.98 0.72 -3.96 16 2 C 0.06 2.15 5.37 86.30 0.46 2.61 16 3 N -0.54 -22.12 4.52 -879.93 -3.98 -26.09 16 4 C 0.20 9.82 4.64 85.56 0.40 10.22 16 5 C -0.55 -28.51 7.42 25.60 0.19 -28.32 16 6 H 0.06 2.97 5.92 -2.91 -0.02 2.95 16 7 C 0.02 1.00 5.46 84.66 0.46 1.46 16 8 N -0.92 -52.57 13.29 21.45 0.28 -52.29 16 9 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 C 0.16 5.60 2.25 44.17 0.10 5.69 16 14 H 0.08 2.93 6.63 -2.38 -0.02 2.92 16 15 C -0.13 -4.54 8.94 71.98 0.64 -3.89 16 16 C 0.06 1.84 4.34 24.98 0.11 1.95 16 17 C -0.23 -5.85 10.76 22.07 0.24 -5.61 16 18 C -0.09 -2.12 10.62 22.40 0.24 -1.89 16 19 C -0.11 -3.12 7.18 24.04 0.17 -2.95 16 20 C 0.58 14.89 8.30 69.97 0.58 15.47 16 21 O -0.52 -14.52 17.65 19.45 0.34 -14.17 16 22 O -0.50 -10.34 13.44 -56.78 -0.76 -11.11 16 23 O -0.15 -4.88 10.39 -4.88 -0.05 -4.93 16 24 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.04 1.56 6.71 -2.39 -0.02 1.54 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.03 1.29 6.27 -2.39 -0.01 1.28 16 28 H 0.06 2.11 6.25 -2.39 -0.01 2.09 16 29 H 0.01 0.47 6.62 -2.39 -0.02 0.45 16 30 H 0.02 1.18 6.23 -2.39 -0.01 1.17 16 31 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 32 H 0.06 2.31 6.37 -2.39 -0.02 2.30 16 33 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.44 3.87 9.11 -74.06 -0.67 3.19 16 Total: -1.00 -63.48 312.51 2.60 -60.88 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.43 Total: 13.12 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 4.31 Total: -9.21 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -3.69 Total: -78.38 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.47 Total: -30.21 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -63.48 2.60 -60.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091781602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.999 kcal (2) G-P(sol) polarization free energy of solvation -63.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds