Wall clock time and date at job start Mon Mar 30 2020 00:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45207 * 109.47104 * 2 1 4 4 C 1.34890 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.21628 * 120.00417 * 0.02562 * 4 3 2 6 6 C 1.46473 * 119.99900 * 179.97438 * 4 3 2 7 7 C 1.36641 * 125.99490 * 179.97438 * 6 4 3 8 8 C 1.40311 * 106.70293 * 179.97438 * 7 6 4 9 9 C 1.35164 * 107.12458 * 0.02562 * 8 7 6 10 10 C 1.50702 * 125.60853 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47296 * 90.00013 * 10 9 8 12 12 C 1.36933 * 119.99828 * 270.00253 * 11 10 9 13 13 H 1.08005 * 120.00223 * 146.04158 * 12 11 10 14 14 C 1.38811 * 120.00226 * 326.04386 * 12 11 10 15 15 N 1.31622 * 119.99727 * 336.64799 * 14 12 11 16 16 Si 1.86796 * 120.00228 * 156.64552 * 14 12 11 17 17 H 1.48502 * 109.47446 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46895 * 120.00020 * 16 14 12 19 19 H 1.48498 * 109.47524 * 240.00341 * 16 14 12 20 20 C 1.46498 * 119.99938 * 89.99500 * 11 10 9 21 21 C 1.53003 * 109.46559 * 89.44478 * 20 11 10 22 22 O 1.33911 * 108.78358 * 359.75350 * 9 8 7 23 23 H 1.08995 * 109.47650 * 299.99887 * 1 2 3 24 24 H 1.09008 * 109.47172 * 60.00151 * 1 2 3 25 25 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47574 * 240.00325 * 2 1 3 27 27 H 1.08994 * 109.47145 * 119.99903 * 2 1 3 28 28 H 1.08004 * 126.65154 * 0.02562 * 7 6 4 29 29 H 1.08002 * 126.43730 * 180.02562 * 8 7 6 30 30 H 1.08998 * 109.47441 * 209.99672 * 10 9 8 31 31 H 1.08993 * 109.47142 * 330.00064 * 10 9 8 32 32 H 0.97001 * 119.99889 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.47204 * 209.44445 * 20 11 10 34 34 H 1.08996 * 109.47494 * 329.44614 * 20 11 10 35 35 H 1.09005 * 109.46959 * 179.97438 * 21 20 11 36 36 H 1.08994 * 109.47335 * 299.99886 * 21 20 11 37 37 H 1.09002 * 109.47305 * 60.00580 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0922 0.5813 0.0005 6 6 3.9110 2.8993 0.0000 7 6 5.2395 3.2189 0.0009 8 6 5.3173 4.6199 -0.0007 9 6 4.0496 5.0888 -0.0019 10 6 3.6518 6.5424 -0.0044 11 7 3.5234 7.0113 -1.3864 12 6 4.6073 7.5434 -2.0323 13 1 4.7318 7.3905 -3.0942 14 6 5.5460 8.2793 -1.3224 15 7 5.2090 8.8565 -0.1885 16 14 7.2875 8.4503 -1.9760 17 1 7.4092 7.7130 -3.2593 18 1 7.5935 9.8862 -2.1997 19 1 8.2442 7.8881 -0.9891 20 6 2.2356 6.9107 -2.0774 21 6 1.4223 8.1824 -1.8278 22 8 3.2054 4.0494 -0.0066 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 6.0690 2.5272 0.0018 29 1 6.2204 5.2122 -0.0009 30 1 2.6973 6.6588 0.5088 31 1 4.4141 7.1286 0.5088 32 1 5.8651 9.3705 0.3078 33 1 2.4056 6.7923 -3.1475 34 1 1.6866 6.0483 -1.6992 35 1 0.4642 8.1078 -2.3423 36 1 1.2523 8.3008 -0.7578 37 1 1.9712 9.0448 -2.2062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:01 Heat of formation + Delta-G solvation = -56.692412 kcal Electronic energy + Delta-G solvation = -20387.530716 eV Core-core repulsion = 17132.535574 eV Total energy + Delta-G solvation = -3254.995142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.07971 -40.01425 -36.55462 -36.14581 -32.56547 -31.96509 -31.88942 -30.70915 -28.60971 -26.38203 -24.13702 -23.33682 -22.10217 -21.22645 -20.38085 -19.80590 -18.11405 -17.10892 -16.72932 -16.62826 -15.52155 -14.94289 -14.66570 -14.12866 -13.87481 -13.75886 -13.53117 -13.09432 -12.80283 -12.58467 -12.39487 -12.34047 -12.03522 -11.73083 -11.48292 -11.33349 -11.25950 -10.82352 -10.69082 -10.59102 -10.51259 -10.27956 -10.18076 -9.89551 -9.49184 -8.70052 -7.98571 -6.91192 -6.02913 -3.52695 1.25587 2.54709 2.84973 3.25765 3.29768 3.36786 3.40499 3.48338 4.35620 4.80402 4.82819 4.96303 5.12929 5.15382 5.37053 5.41856 5.50728 5.60174 5.63661 5.83139 6.03557 6.11136 6.22308 6.29715 6.37648 6.39544 6.50229 6.57726 6.60685 6.88606 6.97294 7.12837 7.24943 7.54878 7.67310 7.90722 8.27941 8.93781 9.57223 10.12708 11.00692 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.005194 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.605641 B = 5389.984181 C = 6244.956846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.349 6.349 4 C 0.560 3.440 5 O -0.507 6.507 6 C -0.115 4.115 7 C -0.092 4.092 8 C -0.234 4.234 9 C 0.063 3.937 10 C 0.201 3.799 11 N -0.569 5.569 12 C -0.260 4.260 13 H 0.067 0.933 14 C 0.013 3.987 15 N -0.884 5.884 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.284 1.284 20 C 0.138 3.862 21 C -0.161 4.161 22 O -0.158 6.158 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.050 0.950 31 H 0.138 0.862 32 H 0.259 0.741 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -11.110 1.657 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.266 6.266 4 C 0.407 3.593 5 O -0.398 6.398 6 C -0.164 4.164 7 C -0.112 4.112 8 C -0.254 4.254 9 C 0.006 3.994 10 C 0.073 3.927 11 N -0.288 5.288 12 C -0.389 4.389 13 H 0.085 0.915 14 C -0.187 4.187 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.211 1.211 20 C 0.013 3.987 21 C -0.220 4.220 22 O -0.053 6.053 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.171 0.829 29 H 0.171 0.829 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.393 -11.289 1.718 13.087 hybrid contribution 1.240 -0.121 -0.345 1.293 sum -5.153 -11.410 1.373 12.595 Atomic orbital electron populations 1.21804 0.92563 1.02788 1.03798 1.23039 0.95444 0.80122 1.02576 1.86694 1.23542 1.32119 1.84232 1.19254 0.80555 0.86839 0.72683 1.90885 1.60619 1.40175 1.48089 1.20370 0.90471 0.83989 1.21616 1.21907 0.94570 0.96405 0.98358 1.21576 0.98705 0.93090 1.11983 1.25752 0.88674 0.91125 0.93845 1.20124 1.02740 0.80863 0.89006 1.43890 1.06384 1.67109 1.11458 1.19169 0.99584 1.26302 0.93829 0.91523 1.25100 0.99973 0.95817 0.97813 1.69921 1.33519 1.32106 1.17093 0.86322 0.84637 0.77631 0.78878 1.19906 1.21450 1.21058 1.20973 0.86545 0.94865 0.96359 1.22223 0.98140 1.00946 1.00706 1.84157 1.37443 1.13274 1.70382 0.91366 0.91330 0.90278 0.91171 0.91185 0.82929 0.82874 0.93132 0.84502 0.93082 0.93537 0.94355 0.94706 0.93605 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.15 0.38 -0.92 16 2 C 0.06 0.71 6.20 37.15 0.23 0.94 16 3 O -0.35 -5.52 10.23 -42.46 -0.43 -5.95 16 4 C 0.56 9.90 7.93 34.05 0.27 10.17 16 5 O -0.51 -9.33 16.66 -19.36 -0.32 -9.66 16 6 C -0.11 -2.19 7.18 -36.84 -0.26 -2.46 16 7 C -0.09 -1.70 10.62 -39.38 -0.42 -2.12 16 8 C -0.23 -4.67 10.77 -39.90 -0.43 -5.10 16 9 C 0.06 1.33 6.89 -35.40 -0.24 1.08 16 10 C 0.20 4.46 5.82 -5.19 -0.03 4.43 16 11 N -0.57 -13.43 2.43 -174.61 -0.43 -13.85 16 12 C -0.26 -6.65 9.48 -15.06 -0.14 -6.80 16 13 H 0.07 1.74 7.93 -52.48 -0.42 1.32 16 14 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 15 N -0.88 -23.29 11.34 55.49 0.63 -22.66 16 16 Si 0.90 20.30 29.61 -169.99 -5.03 15.27 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.14 2.84 6.39 -4.04 -0.03 2.82 16 21 C -0.16 -3.06 10.24 37.16 0.38 -2.67 16 22 O -0.16 -3.23 10.67 4.76 0.05 -3.17 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.15 2.44 8.06 -52.48 -0.42 2.01 16 29 H 0.15 3.03 8.06 -52.49 -0.42 2.60 16 30 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 31 H 0.14 3.33 5.33 -51.93 -0.28 3.05 16 32 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 34 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -28.05 326.02 -6.31 -34.36 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.31 Total: 1.11 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.38 Total: -0.36 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.20 Total: -36.51 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.71 Total: -18.78 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.05 -6.31 -34.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.333 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds