Wall clock time and date at job start Mon Mar 30 2020 00:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45207 * 109.47104 * 2 1 4 4 C 1.34890 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.21628 * 120.00417 * 0.02562 * 4 3 2 6 6 C 1.46473 * 119.99900 * 179.97438 * 4 3 2 7 7 C 1.36641 * 125.99490 * 179.97438 * 6 4 3 8 8 C 1.40311 * 106.70293 * 179.97438 * 7 6 4 9 9 C 1.35164 * 107.12458 * 0.02562 * 8 7 6 10 10 C 1.50702 * 125.60853 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.47296 * 90.00013 * 10 9 8 12 12 C 1.36933 * 119.99828 * 270.00253 * 11 10 9 13 13 H 1.08005 * 120.00223 * 146.04158 * 12 11 10 14 14 C 1.38811 * 120.00226 * 326.04386 * 12 11 10 15 15 N 1.31622 * 119.99727 * 336.64799 * 14 12 11 16 16 Si 1.86796 * 120.00228 * 156.64552 * 14 12 11 17 17 H 1.48502 * 109.47446 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46895 * 120.00020 * 16 14 12 19 19 H 1.48498 * 109.47524 * 240.00341 * 16 14 12 20 20 C 1.46498 * 119.99938 * 89.99500 * 11 10 9 21 21 C 1.53003 * 109.46559 * 89.44478 * 20 11 10 22 22 O 1.33911 * 108.78358 * 359.75350 * 9 8 7 23 23 H 1.08995 * 109.47650 * 299.99887 * 1 2 3 24 24 H 1.09008 * 109.47172 * 60.00151 * 1 2 3 25 25 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47574 * 240.00325 * 2 1 3 27 27 H 1.08994 * 109.47145 * 119.99903 * 2 1 3 28 28 H 1.08004 * 126.65154 * 0.02562 * 7 6 4 29 29 H 1.08002 * 126.43730 * 180.02562 * 8 7 6 30 30 H 1.08998 * 109.47441 * 209.99672 * 10 9 8 31 31 H 1.08993 * 109.47142 * 330.00064 * 10 9 8 32 32 H 0.97001 * 119.99889 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.47204 * 209.44445 * 20 11 10 34 34 H 1.08996 * 109.47494 * 329.44614 * 20 11 10 35 35 H 1.09005 * 109.46959 * 179.97438 * 21 20 11 36 36 H 1.08994 * 109.47335 * 299.99886 * 21 20 11 37 37 H 1.09002 * 109.47305 * 60.00580 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0922 0.5813 0.0005 6 6 3.9110 2.8993 0.0000 7 6 5.2395 3.2189 0.0009 8 6 5.3173 4.6199 -0.0007 9 6 4.0496 5.0888 -0.0019 10 6 3.6518 6.5424 -0.0044 11 7 3.5234 7.0113 -1.3864 12 6 4.6073 7.5434 -2.0323 13 1 4.7318 7.3905 -3.0942 14 6 5.5460 8.2793 -1.3224 15 7 5.2090 8.8565 -0.1885 16 14 7.2875 8.4503 -1.9760 17 1 7.4092 7.7130 -3.2593 18 1 7.5935 9.8862 -2.1997 19 1 8.2442 7.8881 -0.9891 20 6 2.2356 6.9107 -2.0774 21 6 1.4223 8.1824 -1.8278 22 8 3.2054 4.0494 -0.0066 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 6.0690 2.5272 0.0018 29 1 6.2204 5.2122 -0.0009 30 1 2.6973 6.6588 0.5088 31 1 4.4141 7.1286 0.5088 32 1 5.8651 9.3705 0.3078 33 1 2.4056 6.7923 -3.1475 34 1 1.6866 6.0483 -1.6992 35 1 0.4642 8.1078 -2.3423 36 1 1.2523 8.3008 -0.7578 37 1 1.9712 9.0448 -2.2062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:00 Heat of formation + Delta-G solvation = -70.362983 kcal Electronic energy + Delta-G solvation = -20388.123516 eV Core-core repulsion = 17132.535574 eV Total energy + Delta-G solvation = -3255.587942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.63868 -41.32438 -37.93761 -37.80574 -34.12180 -33.81994 -32.89098 -32.19884 -30.26349 -28.05800 -25.75525 -24.64776 -23.29531 -22.82786 -21.96499 -21.37753 -19.54684 -18.86978 -18.06875 -17.91965 -16.97200 -16.80484 -16.27803 -15.71482 -15.51488 -15.01437 -14.84695 -14.44418 -14.22753 -14.09201 -13.92839 -13.60907 -13.22761 -13.06503 -13.01743 -12.93994 -12.57567 -12.54118 -12.26875 -12.21862 -12.01467 -11.90673 -11.59976 -11.57742 -11.02455 -10.61322 -9.56942 -8.77900 -7.95046 -5.48353 -0.21416 1.23545 1.31443 1.46605 1.52172 1.60622 1.82263 2.02262 2.50105 3.19244 3.62633 3.69991 3.93631 3.98586 3.99300 4.04021 4.31292 4.41450 4.56191 4.57712 4.72289 4.75627 4.83647 4.90749 4.90793 5.00098 5.04079 5.06436 5.27028 5.30984 5.39242 5.40310 5.57547 5.70237 5.99171 6.38786 6.52962 7.04481 7.70854 8.24021 9.06755 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.005194 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.605641 B = 5389.984181 C = 6244.956846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.357 6.357 4 C 0.564 3.436 5 O -0.515 6.515 6 C -0.119 4.119 7 C -0.088 4.088 8 C -0.236 4.236 9 C 0.047 3.953 10 C 0.207 3.793 11 N -0.585 5.585 12 C -0.270 4.270 13 H 0.057 0.943 14 C -0.021 4.021 15 N -0.908 5.908 16 Si 0.950 3.050 17 H -0.274 1.274 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.134 3.866 21 C -0.149 4.149 22 O -0.164 6.164 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.179 0.821 29 H 0.152 0.848 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.258 0.742 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 -12.687 1.470 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.411 3.589 5 O -0.407 6.407 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.256 4.256 9 C -0.010 4.010 10 C 0.079 3.921 11 N -0.305 5.305 12 C -0.400 4.400 13 H 0.075 0.925 14 C -0.219 4.219 15 N -0.551 5.551 16 Si 0.777 3.223 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.208 1.208 20 C 0.009 3.991 21 C -0.208 4.208 22 O -0.060 6.060 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.196 0.804 29 H 0.170 0.830 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.931 -12.879 1.530 14.706 hybrid contribution 1.300 0.238 -0.275 1.350 sum -5.631 -12.642 1.255 13.896 Atomic orbital electron populations 1.21851 0.90216 1.04698 1.03620 1.23482 0.97274 0.78092 1.03329 1.86689 1.22208 1.34916 1.83585 1.19043 0.81290 0.86028 0.72499 1.90877 1.61063 1.40156 1.48556 1.20801 0.90913 0.84275 1.20855 1.22152 0.95183 0.95928 0.97467 1.21667 0.98293 0.94054 1.11551 1.25379 0.89129 0.90881 0.95563 1.19851 1.02346 0.81475 0.88391 1.44058 1.07006 1.67634 1.11754 1.19254 1.00638 1.26452 0.93674 0.92515 1.25615 1.02405 0.95763 0.98127 1.70010 1.34214 1.32865 1.18007 0.85508 0.81293 0.77143 0.78308 1.19840 1.21739 1.20758 1.21088 0.85830 0.96005 0.96162 1.22078 0.99174 0.99006 1.00531 1.84116 1.37613 1.13566 1.70665 0.91432 0.91604 0.87277 0.90566 0.90333 0.80409 0.82985 0.92478 0.86515 0.93216 0.93534 0.93258 0.91303 0.94242 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.05 1.06 6.20 71.98 0.45 1.51 16 3 O -0.36 -10.70 10.23 -56.67 -0.58 -11.28 16 4 C 0.56 19.08 7.93 69.97 0.55 19.63 16 5 O -0.51 -17.98 16.66 19.42 0.32 -17.65 16 6 C -0.12 -4.39 7.18 24.04 0.17 -4.22 16 7 C -0.09 -3.10 10.62 22.40 0.24 -2.86 16 8 C -0.24 -9.30 10.77 22.07 0.24 -9.06 16 9 C 0.05 1.97 6.89 24.98 0.17 2.14 16 10 C 0.21 9.30 5.82 85.63 0.50 9.80 16 11 N -0.58 -27.71 2.43 -706.35 -1.72 -29.43 16 12 C -0.27 -13.98 9.48 84.03 0.80 -13.18 16 13 H 0.06 2.99 7.93 -2.91 -0.02 2.97 16 14 C -0.02 -1.07 4.94 84.86 0.42 -0.65 16 15 N -0.91 -48.39 11.34 21.65 0.25 -48.14 16 16 Si 0.95 41.84 29.61 68.60 2.03 43.88 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 C 0.13 5.45 6.39 86.38 0.55 6.00 16 21 C -0.15 -5.53 10.24 71.98 0.74 -4.79 16 22 O -0.16 -6.61 10.67 -4.83 -0.05 -6.66 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.18 5.26 8.06 -2.91 -0.02 5.24 16 29 H 0.15 5.98 8.06 -2.91 -0.02 5.95 16 30 H 0.06 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.12 5.79 5.33 -2.39 -0.01 5.78 16 32 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 34 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 35 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -58.82 326.02 6.87 -51.95 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.05 Total: 14.42 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.57 Total: 2.93 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.47 Total: -77.57 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.31 Total: -35.60 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.88 kcal Total: -58.82 6.87 -51.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.416 kcal (2) G-P(sol) polarization free energy of solvation -58.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds