Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99771 * 2 1 4 4 O 1.20831 * 120.00620 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99841 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46880 * 179.97438 * 5 3 2 7 7 C 1.37098 * 120.00121 * 269.99346 * 6 5 3 8 8 H 1.07997 * 120.00727 * 202.98665 * 7 6 5 9 9 C 1.38955 * 119.99836 * 22.98812 * 7 6 5 10 10 N 1.31415 * 119.99925 * 351.24914 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 171.25285 * 9 7 6 12 12 H 1.48500 * 109.47302 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47447 * 119.99951 * 11 9 7 14 14 H 1.48498 * 109.46916 * 239.99905 * 11 9 7 15 15 C 1.34772 * 120.00177 * 90.00425 * 6 5 3 16 16 O 1.21302 * 120.00030 * 5.00158 * 15 6 5 17 17 C 1.50701 * 120.00258 * 185.00568 * 15 6 5 18 18 C 1.53001 * 109.47272 * 175.56730 * 17 15 6 19 19 H 1.09001 * 110.34710 * 307.28857 * 18 17 15 20 20 C 1.51105 * 110.38573 * 69.69681 * 18 17 15 21 21 C 1.30727 * 111.13332 * 135.34820 * 20 18 17 22 22 C 1.51097 * 110.99195 * 359.84210 * 21 20 18 23 23 C 1.54636 * 104.82953 * 343.70757 * 22 21 20 24 24 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 300.00213 * 1 2 3 26 26 H 1.09008 * 109.46836 * 60.00027 * 1 2 3 27 27 H 1.09000 * 109.46980 * 59.99662 * 5 3 2 28 28 H 1.09001 * 109.46573 * 299.99999 * 5 3 2 29 29 H 0.97000 * 120.00073 * 185.01022 * 10 9 7 30 30 H 1.09005 * 109.46580 * 55.56837 * 17 15 6 31 31 H 1.09001 * 109.47205 * 295.56835 * 17 15 6 32 32 H 1.07996 * 124.44553 * 315.27228 * 20 18 17 33 33 H 1.07999 * 124.55565 * 179.97438 * 21 20 18 34 34 H 1.09005 * 110.38696 * 224.84064 * 22 21 20 35 35 H 1.09002 * 110.38553 * 102.57969 * 22 21 20 36 36 H 1.09000 * 111.03731 * 142.60631 * 23 22 21 37 37 H 1.08996 * 111.03768 * 266.51371 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1767 3.3363 -1.1878 8 1 4.8148 4.2067 -1.2253 9 6 3.5531 2.8818 -2.3434 10 7 2.9184 1.7311 -2.3384 11 14 3.6171 3.9064 -3.9040 12 1 4.3867 5.1504 -3.6482 13 1 4.2786 3.1271 -4.9811 14 1 2.2362 4.2566 -4.3231 15 6 4.1723 3.3267 1.1666 16 8 4.0888 2.7231 2.2155 17 6 4.4891 4.8000 1.1683 18 6 4.5478 5.3075 2.6106 19 1 3.6382 5.0346 3.1456 20 6 5.7630 4.7509 3.3154 21 6 6.3771 5.6796 4.0004 22 6 5.6734 7.0095 3.8612 23 6 4.7473 6.8407 2.6344 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 3.9565 0.7805 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 2.5456 1.3793 -3.1619 30 1 3.7131 5.3391 0.6248 31 1 5.4524 4.9651 0.6856 32 1 6.0819 3.7205 3.2614 33 1 7.2700 5.5192 4.5863 34 1 6.3970 7.8053 3.6841 35 1 5.0858 7.2234 4.7541 36 1 3.7990 7.3564 2.7862 37 1 5.2370 7.1863 1.7241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120590423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -95.678673 kcal Electronic energy + Delta-G solvation = -21061.540448 eV Core-core repulsion = 17804.854735 eV Total energy + Delta-G solvation = -3256.685713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51524 -38.80443 -37.58574 -35.38723 -34.51694 -31.54646 -30.97744 -28.64161 -28.36201 -26.37451 -25.17164 -23.87816 -20.47656 -19.94556 -19.22912 -18.33858 -16.91470 -16.55767 -16.18710 -15.54986 -15.40332 -15.10083 -14.82817 -14.26871 -14.02203 -13.79497 -12.82489 -12.63754 -12.43344 -11.97263 -11.64151 -11.52744 -11.40610 -11.30589 -11.23783 -11.20317 -10.94454 -10.82327 -10.62895 -10.48862 -10.38174 -10.19119 -9.80166 -9.49772 -8.99599 -8.51487 -8.48990 -7.93111 -6.44253 -4.06685 2.68966 3.07237 3.17803 3.21123 3.52930 3.75608 4.03541 4.11595 4.69164 4.99103 5.03046 5.06521 5.33038 5.61630 5.71713 5.79054 5.83111 5.91235 5.96938 6.00821 6.05316 6.12105 6.18826 6.29748 6.33977 6.48921 6.60791 6.65858 6.75847 6.94057 6.97561 7.31349 7.33499 7.51563 7.66902 8.26321 8.98677 9.16074 9.39179 9.79123 10.57506 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.006815 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.298870 B = 4107.522182 C = 5222.345733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.516 6.516 5 C 0.153 3.847 6 N -0.437 5.437 7 C -0.323 4.323 8 H 0.103 0.897 9 C 0.040 3.960 10 N -0.886 5.886 11 Si 0.932 3.068 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.473 3.527 16 O -0.601 6.601 17 C -0.109 4.109 18 C -0.055 4.055 19 H 0.085 0.915 20 C -0.117 4.117 21 C -0.205 4.205 22 C -0.094 4.094 23 C -0.123 4.123 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.137 0.863 28 H 0.076 0.924 29 H 0.272 0.728 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 3.233 3.896 5.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.333 3.667 4 O -0.402 6.402 5 C 0.028 3.972 6 N -0.156 5.156 7 C -0.450 4.450 8 H 0.120 0.880 9 C -0.162 4.162 10 N -0.526 5.526 11 Si 0.759 3.241 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.263 3.737 16 O -0.487 6.487 17 C -0.149 4.149 18 C -0.074 4.074 19 H 0.103 0.897 20 C -0.135 4.135 21 C -0.223 4.223 22 C -0.131 4.131 23 C -0.161 4.161 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.155 0.845 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.685 3.168 4.252 5.564 hybrid contribution -0.401 0.387 -1.116 1.247 sum 1.284 3.556 3.137 4.912 Atomic orbital electron populations 1.22914 0.79017 1.01729 1.01448 1.86467 1.21394 1.35585 1.85635 1.24021 0.92406 0.80367 0.69915 1.90495 1.66755 1.36480 1.46438 1.20630 0.86812 0.85865 1.03889 1.43376 1.58362 1.08397 1.05483 1.19713 1.27370 1.12879 0.85057 0.87952 1.25300 0.94370 0.96335 1.00241 1.69615 1.36694 1.17897 1.28431 0.85785 0.78128 0.79704 0.80517 1.19229 1.20695 1.20637 1.20317 0.81054 0.89139 0.83193 1.90526 1.57776 1.68852 1.31522 1.21399 1.02962 0.94320 0.96244 1.20847 0.97999 0.93071 0.95441 0.89692 1.23455 0.95087 0.99046 0.95912 1.23192 1.00591 0.95620 1.02934 1.21272 0.97628 0.96131 0.98080 1.22563 0.99399 0.95970 0.98134 0.89648 0.93264 0.92827 0.84529 0.90621 0.91686 0.89436 0.90164 0.85673 0.86553 0.91975 0.91521 0.91282 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.28 10.57 -39.23 -0.41 -8.69 16 3 C 0.49 12.39 5.92 36.01 0.21 12.60 16 4 O -0.52 -14.43 15.94 -18.75 -0.30 -14.73 16 5 C 0.15 3.76 5.29 -5.19 -0.03 3.73 16 6 N -0.44 -10.97 2.11 -116.09 -0.25 -11.22 16 7 C -0.32 -8.02 9.01 -14.93 -0.13 -8.16 16 8 H 0.10 2.37 6.70 -52.49 -0.35 2.02 16 9 C 0.04 1.00 5.41 -17.46 -0.09 0.91 16 10 N -0.89 -22.74 8.21 55.50 0.46 -22.28 16 11 Si 0.93 19.60 29.56 -169.99 -5.03 14.57 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.47 11.34 7.46 -10.99 -0.08 11.26 16 16 O -0.60 -15.39 14.32 5.54 0.08 -15.31 16 17 C -0.11 -2.16 3.65 -27.88 -0.10 -2.26 16 18 C -0.06 -0.97 2.52 -90.71 -0.23 -1.19 16 19 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16 20 C -0.12 -2.00 9.24 -35.75 -0.33 -2.33 16 21 C -0.21 -2.96 10.79 -35.76 -0.39 -3.35 16 22 C -0.09 -1.21 6.80 -26.83 -0.18 -1.39 16 23 C -0.12 -1.73 6.71 -25.01 -0.17 -1.90 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.05 0.99 8.13 -51.92 -0.42 0.57 16 27 H 0.14 3.36 6.28 -51.93 -0.33 3.04 16 28 H 0.08 1.77 7.36 -51.93 -0.38 1.38 16 29 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 30 H 0.09 1.73 8.05 -51.93 -0.42 1.32 16 31 H 0.08 1.48 7.69 -51.93 -0.40 1.08 16 32 H 0.13 2.32 7.43 -52.49 -0.39 1.93 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -30.14 310.02 -6.42 -36.56 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.19 Total: 6.67 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -0.46 Total: 9.77 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.21 Total: -33.50 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.63 Total: -38.73 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.14 -6.42 -36.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120590423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.124 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds