Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99771 * 2 1 4 4 O 1.20831 * 120.00620 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99841 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46880 * 179.97438 * 5 3 2 7 7 C 1.37098 * 120.00121 * 269.99346 * 6 5 3 8 8 H 1.07997 * 120.00727 * 202.98665 * 7 6 5 9 9 C 1.38955 * 119.99836 * 22.98812 * 7 6 5 10 10 N 1.31415 * 119.99925 * 351.24914 * 9 7 6 11 11 Si 1.86794 * 120.00176 * 171.25285 * 9 7 6 12 12 H 1.48500 * 109.47302 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47447 * 119.99951 * 11 9 7 14 14 H 1.48498 * 109.46916 * 239.99905 * 11 9 7 15 15 C 1.34772 * 120.00177 * 90.00425 * 6 5 3 16 16 O 1.21302 * 120.00030 * 5.00158 * 15 6 5 17 17 C 1.50701 * 120.00258 * 185.00568 * 15 6 5 18 18 C 1.53001 * 109.47272 * 175.56730 * 17 15 6 19 19 H 1.09001 * 110.34710 * 307.28857 * 18 17 15 20 20 C 1.51105 * 110.38573 * 69.69681 * 18 17 15 21 21 C 1.30727 * 111.13332 * 135.34820 * 20 18 17 22 22 C 1.51097 * 110.99195 * 359.84210 * 21 20 18 23 23 C 1.54636 * 104.82953 * 343.70757 * 22 21 20 24 24 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 300.00213 * 1 2 3 26 26 H 1.09008 * 109.46836 * 60.00027 * 1 2 3 27 27 H 1.09000 * 109.46980 * 59.99662 * 5 3 2 28 28 H 1.09001 * 109.46573 * 299.99999 * 5 3 2 29 29 H 0.97000 * 120.00073 * 185.01022 * 10 9 7 30 30 H 1.09005 * 109.46580 * 55.56837 * 17 15 6 31 31 H 1.09001 * 109.47205 * 295.56835 * 17 15 6 32 32 H 1.07996 * 124.44553 * 315.27228 * 20 18 17 33 33 H 1.07999 * 124.55565 * 179.97438 * 21 20 18 34 34 H 1.09005 * 110.38696 * 224.84064 * 22 21 20 35 35 H 1.09002 * 110.38553 * 102.57969 * 22 21 20 36 36 H 1.09000 * 111.03731 * 142.60631 * 23 22 21 37 37 H 1.08996 * 111.03768 * 266.51371 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1767 3.3363 -1.1878 8 1 4.8148 4.2067 -1.2253 9 6 3.5531 2.8818 -2.3434 10 7 2.9184 1.7311 -2.3384 11 14 3.6171 3.9064 -3.9040 12 1 4.3867 5.1504 -3.6482 13 1 4.2786 3.1271 -4.9811 14 1 2.2362 4.2566 -4.3231 15 6 4.1723 3.3267 1.1666 16 8 4.0888 2.7231 2.2155 17 6 4.4891 4.8000 1.1683 18 6 4.5478 5.3075 2.6106 19 1 3.6382 5.0346 3.1456 20 6 5.7630 4.7509 3.3154 21 6 6.3771 5.6796 4.0004 22 6 5.6734 7.0095 3.8612 23 6 4.7473 6.8407 2.6344 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 3.9565 0.7805 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 2.5456 1.3793 -3.1619 30 1 3.7131 5.3391 0.6248 31 1 5.4524 4.9651 0.6856 32 1 6.0819 3.7205 3.2614 33 1 7.2700 5.5192 4.5863 34 1 6.3970 7.8053 3.6841 35 1 5.0858 7.2234 4.7541 36 1 3.7990 7.3564 2.7862 37 1 5.2370 7.1863 1.7241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120590423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -112.056255 kcal Electronic energy + Delta-G solvation = -21062.250633 eV Core-core repulsion = 17804.854735 eV Total energy + Delta-G solvation = -3257.395898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37826 -40.46240 -39.08157 -37.26829 -36.46288 -33.45853 -32.50096 -30.22080 -29.68202 -27.96817 -26.91471 -25.47804 -22.19963 -21.30338 -21.06649 -19.69793 -18.68487 -18.46281 -17.99097 -17.28238 -17.02192 -16.72829 -16.28341 -15.96474 -15.80154 -15.29609 -14.56922 -14.26187 -14.21304 -13.47358 -13.35470 -13.02394 -12.95030 -12.82946 -12.69045 -12.64977 -12.56613 -12.36830 -12.03997 -12.01194 -11.88232 -11.59154 -11.58183 -11.45194 -10.93640 -10.40042 -9.87092 -9.70054 -8.32680 -6.00661 1.38746 1.45732 1.47332 1.58770 1.69334 1.84966 2.22518 2.35265 2.94554 3.14717 3.80482 3.83695 4.12312 4.24790 4.32360 4.34752 4.38695 4.49168 4.51181 4.67110 4.69218 4.72845 4.76913 4.90342 4.97128 5.02835 5.07819 5.19595 5.37662 5.41951 5.48679 5.64470 5.73767 5.78733 6.09037 6.35099 7.07540 7.22054 7.50113 7.90044 8.69147 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.006815 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.298870 B = 4107.522182 C = 5222.345733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.492 3.508 4 O -0.550 6.550 5 C 0.151 3.849 6 N -0.450 5.450 7 C -0.339 4.339 8 H 0.117 0.883 9 C -0.004 4.004 10 N -0.909 5.909 11 Si 0.997 3.003 12 H -0.251 1.251 13 H -0.274 1.274 14 H -0.293 1.293 15 C 0.460 3.540 16 O -0.625 6.625 17 C -0.100 4.100 18 C -0.054 4.054 19 H 0.056 0.944 20 C -0.161 4.161 21 C -0.173 4.173 22 C -0.093 4.093 23 C -0.117 4.117 24 H 0.134 0.866 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.271 0.729 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 4.979 3.836 6.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.336 3.664 4 O -0.440 6.440 5 C 0.026 3.974 6 N -0.169 5.169 7 C -0.465 4.465 8 H 0.134 0.866 9 C -0.204 4.204 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.174 1.174 13 H -0.200 1.200 14 H -0.220 1.220 15 C 0.251 3.749 16 O -0.513 6.513 17 C -0.140 4.140 18 C -0.073 4.073 19 H 0.074 0.926 20 C -0.179 4.179 21 C -0.190 4.190 22 C -0.130 4.130 23 C -0.155 4.155 24 H 0.152 0.848 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.150 0.850 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.408 4.896 4.200 6.885 hybrid contribution -0.659 -0.252 -1.025 1.244 sum 1.749 4.645 3.175 5.892 Atomic orbital electron populations 1.23288 0.76353 1.04843 1.01083 1.86431 1.23974 1.33882 1.84972 1.24081 0.92647 0.80626 0.69000 1.90459 1.67528 1.37713 1.48267 1.20628 0.86889 0.86284 1.03642 1.43639 1.58504 1.08620 1.06129 1.20104 1.27926 1.13383 0.85116 0.86573 1.26167 0.93952 0.97168 1.03136 1.69713 1.37237 1.19066 1.28928 0.84795 0.77408 0.78866 0.76831 1.17417 1.19951 1.21986 1.21125 0.80338 0.90850 0.82542 1.90492 1.58711 1.69822 1.32285 1.21400 1.03249 0.91117 0.98225 1.20817 0.97144 0.95861 0.93451 0.92568 1.23245 0.96598 0.98670 0.99382 1.23565 0.99908 0.95591 0.99965 1.21352 0.97928 0.95729 0.97960 1.22573 1.00650 0.92830 0.99424 0.84794 0.93124 0.93738 0.84957 0.90415 0.91878 0.89695 0.88826 0.88347 0.84329 0.89200 0.90084 0.90048 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.75 10.57 -51.33 -0.54 -17.29 16 3 C 0.49 25.46 5.92 71.24 0.42 25.89 16 4 O -0.55 -31.59 15.94 21.95 0.35 -31.24 16 5 C 0.15 7.65 5.29 85.64 0.45 8.10 16 6 N -0.45 -23.14 2.11 -639.58 -1.35 -24.49 16 7 C -0.34 -16.90 9.01 84.04 0.76 -16.14 16 8 H 0.12 5.31 6.70 -2.91 -0.02 5.29 16 9 C 0.00 -0.22 5.41 84.93 0.46 0.24 16 10 N -0.91 -47.20 8.21 21.67 0.18 -47.02 16 11 Si 1.00 39.71 29.56 68.60 2.03 41.74 16 12 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 13 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 14 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 15 C 0.46 22.71 7.46 87.66 0.65 23.37 16 16 O -0.63 -33.39 14.32 -3.10 -0.04 -33.43 16 17 C -0.10 -3.98 3.65 29.85 0.11 -3.87 16 18 C -0.05 -1.89 2.52 -10.85 -0.03 -1.92 16 19 H 0.06 2.24 7.97 -2.39 -0.02 2.22 16 20 C -0.16 -5.47 9.24 26.05 0.24 -5.23 16 21 C -0.17 -4.55 10.79 26.05 0.28 -4.26 16 22 C -0.09 -2.04 6.80 30.53 0.21 -1.83 16 23 C -0.12 -3.00 6.71 31.71 0.21 -2.79 16 24 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.04 1.62 8.13 -2.38 -0.02 1.61 16 27 H 0.13 6.74 6.28 -2.39 -0.01 6.73 16 28 H 0.08 3.80 7.36 -2.39 -0.02 3.78 16 29 H 0.27 13.51 8.32 -92.71 -0.77 12.74 16 30 H 0.08 3.37 8.05 -2.38 -0.02 3.35 16 31 H 0.09 3.42 7.69 -2.39 -0.02 3.40 16 32 H 0.10 3.82 7.43 -2.91 -0.02 3.80 16 33 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.94 7.91 -2.39 -0.02 1.92 16 Total: -1.00 -66.34 310.02 6.64 -59.69 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 1.06 Total: 27.98 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 4.97 Total: 24.07 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.17 Total: -71.52 kcal Atomic # 8 Polarization: -81.73 SS G_CDS: -0.24 Total: -81.96 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -66.34 6.64 -59.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120590423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.366 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds