Wall clock time and date at job start Mon Mar 30 2020 00:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47016 * 2 1 4 4 C 1.36935 * 119.99822 * 264.58179 * 3 2 1 5 5 H 1.08007 * 120.00115 * 191.59305 * 4 3 2 6 6 C 1.38813 * 120.00188 * 11.58854 * 4 3 2 7 7 N 1.31617 * 119.99711 * 17.90269 * 6 4 3 8 8 Si 1.86800 * 120.00212 * 197.90974 * 6 4 3 9 9 H 1.48499 * 109.47385 * 84.96877 * 8 6 4 10 10 H 1.48496 * 109.47145 * 204.97396 * 8 6 4 11 11 H 1.48503 * 109.46640 * 324.97328 * 8 6 4 12 12 C 1.46507 * 120.00236 * 84.58399 * 3 2 1 13 13 C 1.50695 * 109.46916 * 270.00035 * 12 3 2 14 14 C 1.34154 * 125.42992 * 89.99602 * 13 12 3 15 15 C 1.47063 * 105.95309 * 179.97438 * 14 13 12 16 16 C 1.47230 * 127.20433 * 180.02562 * 15 14 13 17 17 O 1.21539 * 120.00035 * 179.97438 * 16 15 14 18 18 O 1.34771 * 119.99831 * 359.97282 * 16 15 14 19 19 C 1.45203 * 116.99515 * 179.97438 * 18 16 15 20 20 C 1.36501 * 105.59371 * 0.02562 * 15 14 13 21 21 C 1.50697 * 125.80844 * 180.02562 * 20 15 14 22 22 O 1.33628 * 108.38528 * 359.76034 * 20 15 14 23 23 H 1.09001 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46655 * 300.00134 * 1 2 3 25 25 H 1.08995 * 109.46788 * 59.99925 * 1 2 3 26 26 H 1.09001 * 109.47156 * 239.99347 * 2 1 3 27 27 H 1.09009 * 109.46947 * 119.99965 * 2 1 3 28 28 H 0.96996 * 120.00044 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.46769 * 149.99696 * 12 3 2 30 30 H 1.08999 * 109.46574 * 29.99860 * 12 3 2 31 31 H 1.08006 * 127.02789 * 0.02562 * 14 13 12 32 32 H 1.08998 * 109.46735 * 180.02562 * 19 18 16 33 33 H 1.09001 * 109.47131 * 300.00413 * 19 18 16 34 34 H 1.09003 * 109.47122 * 60.00491 * 19 18 16 35 35 H 1.09006 * 109.47044 * 90.00234 * 21 20 15 36 36 H 1.09004 * 109.47551 * 209.99837 * 21 20 15 37 37 H 1.09005 * 109.47444 * 330.00476 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3521 1.9894 -1.1806 5 1 2.8839 2.9294 -1.1724 6 6 2.0071 1.3977 -2.3880 7 7 1.0776 0.4665 -2.4226 8 14 2.8621 1.9229 -3.9636 9 1 4.1293 1.1638 -4.1160 10 1 1.9767 1.6462 -5.1232 11 1 3.1601 3.3765 -3.9040 12 6 2.1496 2.1118 1.2631 13 6 0.8611 2.8337 1.5620 14 6 -0.1681 2.3310 2.2604 15 6 -1.1900 3.3881 2.2919 16 6 -2.5112 3.3301 2.9391 17 8 -3.2576 4.2877 2.8837 18 8 -2.8928 2.2152 3.5930 19 6 -4.2083 2.2292 4.2076 20 6 -0.6574 4.4342 1.5954 21 6 -1.3279 5.7608 1.3473 22 8 0.5621 4.0841 1.1761 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 0.8368 0.0527 -3.2662 29 1 2.9609 2.8350 1.1818 30 1 2.3679 1.4098 2.0678 31 1 -0.2327 1.3505 2.7087 32 1 -4.3896 1.2737 4.6997 33 1 -4.2569 3.0317 4.9437 34 1 -4.9658 2.3930 3.4411 35 1 -1.0803 6.4498 2.1549 36 1 -0.9802 6.1721 0.3995 37 1 -2.4081 5.6203 1.3079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120986844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:11 Heat of formation + Delta-G solvation = -43.352130 kcal Electronic energy + Delta-G solvation = -20891.005405 eV Core-core repulsion = 17636.588741 eV Total energy + Delta-G solvation = -3254.416664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.03886 -39.89207 -36.32574 -36.14425 -32.67244 -32.30972 -30.83348 -29.60268 -28.17738 -27.15591 -24.82441 -23.37268 -22.59426 -21.03976 -20.48287 -19.12796 -17.34376 -16.80762 -16.32136 -16.27032 -15.59713 -15.33800 -14.90402 -13.89441 -13.70642 -13.48618 -13.19340 -13.11006 -12.87350 -12.63380 -12.50189 -12.03509 -12.02200 -11.65631 -11.54954 -11.08632 -10.88640 -10.76827 -10.70238 -10.45856 -10.32259 -9.97725 -9.87628 -9.51491 -9.19337 -8.48265 -7.83582 -7.00211 -5.80136 -3.21249 1.51164 2.59161 2.85089 3.32031 3.39790 3.41255 3.42998 3.44302 4.44462 4.92341 5.05737 5.11220 5.18091 5.26447 5.37328 5.49549 5.50839 5.57340 5.64995 5.92533 5.97843 6.08832 6.26472 6.37854 6.49545 6.56508 6.60072 6.91775 6.96020 7.10199 7.17207 7.61848 7.68690 7.77004 7.98352 8.15122 8.30006 9.16262 9.73566 10.17252 11.19749 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.005597 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.633490 B = 5001.804273 C = 5412.473651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 N -0.578 5.578 4 C -0.253 4.253 5 H 0.077 0.923 6 C -0.001 4.001 7 N -0.896 5.896 8 Si 0.909 3.091 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.280 1.280 12 C 0.212 3.788 13 C 0.008 3.992 14 C -0.187 4.187 15 C -0.241 4.241 16 C 0.546 3.454 17 O -0.524 6.524 18 O -0.351 6.351 19 C 0.038 3.962 20 C 0.073 3.927 21 C -0.081 4.081 22 O -0.160 6.160 23 H 0.017 0.983 24 H 0.023 0.977 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.005 0.995 28 H 0.253 0.747 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 3.658 10.713 12.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 N -0.297 5.297 4 C -0.382 4.382 5 H 0.095 0.905 6 C -0.198 4.198 7 N -0.541 5.541 8 Si 0.739 3.261 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.206 1.206 12 C 0.083 3.917 13 C -0.045 4.045 14 C -0.208 4.208 15 C -0.243 4.243 16 C 0.394 3.606 17 O -0.415 6.415 18 O -0.267 6.267 19 C -0.056 4.056 20 C 0.019 3.981 21 C -0.137 4.137 22 O -0.055 6.055 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.170 0.830 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.766 3.958 10.351 12.063 hybrid contribution -0.340 0.067 -0.746 0.822 sum -5.105 4.025 9.605 11.598 Atomic orbital electron populations 1.22458 0.98917 0.98299 1.01898 1.20967 0.92845 0.83687 0.98496 1.44588 1.73994 1.09823 1.01304 1.19383 1.29443 1.06133 0.83254 0.90545 1.24883 0.97671 0.99440 0.97837 1.70148 1.29404 1.29611 1.24941 0.86200 0.79022 0.78172 0.82749 1.21333 1.21787 1.20599 1.19805 0.88634 0.93030 0.90268 1.24939 1.02089 0.81359 0.96087 1.22355 0.92645 0.99659 1.06094 1.20016 0.95048 0.97783 1.11502 1.20107 0.85680 0.79867 0.74948 1.90769 1.54588 1.37021 1.59140 1.86611 1.35956 1.39668 1.64498 1.23217 0.81626 1.03224 0.97556 1.22643 0.84498 0.96405 0.94522 1.20539 1.00820 0.89317 1.03024 1.83859 1.29502 1.30873 1.61220 0.96369 0.95791 0.89334 0.88854 0.97693 0.93632 0.91609 0.90285 0.83036 0.88256 0.92124 0.92029 0.89769 0.90247 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.54 37.16 0.35 -3.30 16 2 C 0.16 3.86 5.64 -4.04 -0.02 3.83 16 3 N -0.58 -13.80 2.52 -174.60 -0.44 -14.24 16 4 C -0.25 -6.66 9.74 -15.06 -0.15 -6.80 16 5 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 6 C 0.00 -0.02 5.04 -17.43 -0.09 -0.11 16 7 N -0.90 -24.63 8.18 55.49 0.45 -24.18 16 8 Si 0.91 21.27 29.59 -169.99 -5.03 16.24 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.21 4.18 6.22 -5.19 -0.03 4.15 16 13 C 0.01 0.16 6.58 -35.75 -0.24 -0.07 16 14 C -0.19 -3.56 8.82 -37.44 -0.33 -3.89 16 15 C -0.24 -4.52 6.32 -103.29 -0.65 -5.17 16 16 C 0.55 9.63 7.95 34.38 0.27 9.91 16 17 O -0.52 -9.45 14.64 -19.30 -0.28 -9.73 16 18 O -0.35 -5.53 10.48 -40.68 -0.43 -5.95 16 19 C 0.04 0.42 10.57 101.05 1.07 1.49 16 20 C 0.07 1.34 7.38 -34.94 -0.26 1.08 16 21 C -0.08 -1.15 9.89 36.00 0.36 -0.79 16 22 O -0.16 -3.24 10.52 7.69 0.08 -3.16 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.52 4.90 -51.93 -0.25 0.26 16 25 H 0.09 2.39 6.20 -51.93 -0.32 2.07 16 26 H 0.09 2.44 5.88 -51.93 -0.31 2.13 16 27 H 0.00 0.10 7.97 -51.92 -0.41 -0.31 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 29 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 30 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 31 H 0.15 2.70 7.49 -52.48 -0.39 2.31 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.47 6.49 -51.93 -0.34 1.13 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -29.94 310.87 -5.61 -35.56 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.94 Total: 0.46 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 0.29 Total: 0.32 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.01 Total: -38.42 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.63 Total: -18.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.94 -5.61 -35.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120986844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.797 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds