Wall clock time and date at job start Mon Mar 30 2020 00:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47016 * 2 1 4 4 C 1.36935 * 119.99822 * 264.58179 * 3 2 1 5 5 H 1.08007 * 120.00115 * 191.59305 * 4 3 2 6 6 C 1.38813 * 120.00188 * 11.58854 * 4 3 2 7 7 N 1.31617 * 119.99711 * 17.90269 * 6 4 3 8 8 Si 1.86800 * 120.00212 * 197.90974 * 6 4 3 9 9 H 1.48499 * 109.47385 * 84.96877 * 8 6 4 10 10 H 1.48496 * 109.47145 * 204.97396 * 8 6 4 11 11 H 1.48503 * 109.46640 * 324.97328 * 8 6 4 12 12 C 1.46507 * 120.00236 * 84.58399 * 3 2 1 13 13 C 1.50695 * 109.46916 * 270.00035 * 12 3 2 14 14 C 1.34154 * 125.42992 * 89.99602 * 13 12 3 15 15 C 1.47063 * 105.95309 * 179.97438 * 14 13 12 16 16 C 1.47230 * 127.20433 * 180.02562 * 15 14 13 17 17 O 1.21539 * 120.00035 * 179.97438 * 16 15 14 18 18 O 1.34771 * 119.99831 * 359.97282 * 16 15 14 19 19 C 1.45203 * 116.99515 * 179.97438 * 18 16 15 20 20 C 1.36501 * 105.59371 * 0.02562 * 15 14 13 21 21 C 1.50697 * 125.80844 * 180.02562 * 20 15 14 22 22 O 1.33628 * 108.38528 * 359.76034 * 20 15 14 23 23 H 1.09001 * 109.46923 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46655 * 300.00134 * 1 2 3 25 25 H 1.08995 * 109.46788 * 59.99925 * 1 2 3 26 26 H 1.09001 * 109.47156 * 239.99347 * 2 1 3 27 27 H 1.09009 * 109.46947 * 119.99965 * 2 1 3 28 28 H 0.96996 * 120.00044 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.46769 * 149.99696 * 12 3 2 30 30 H 1.08999 * 109.46574 * 29.99860 * 12 3 2 31 31 H 1.08006 * 127.02789 * 0.02562 * 14 13 12 32 32 H 1.08998 * 109.46735 * 180.02562 * 19 18 16 33 33 H 1.09001 * 109.47131 * 300.00413 * 19 18 16 34 34 H 1.09003 * 109.47122 * 60.00491 * 19 18 16 35 35 H 1.09006 * 109.47044 * 90.00234 * 21 20 15 36 36 H 1.09004 * 109.47551 * 209.99837 * 21 20 15 37 37 H 1.09005 * 109.47444 * 330.00476 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3521 1.9894 -1.1806 5 1 2.8839 2.9294 -1.1724 6 6 2.0071 1.3977 -2.3880 7 7 1.0776 0.4665 -2.4226 8 14 2.8621 1.9229 -3.9636 9 1 4.1293 1.1638 -4.1160 10 1 1.9767 1.6462 -5.1232 11 1 3.1601 3.3765 -3.9040 12 6 2.1496 2.1118 1.2631 13 6 0.8611 2.8337 1.5620 14 6 -0.1681 2.3310 2.2604 15 6 -1.1900 3.3881 2.2919 16 6 -2.5112 3.3301 2.9391 17 8 -3.2576 4.2877 2.8837 18 8 -2.8928 2.2152 3.5930 19 6 -4.2083 2.2292 4.2076 20 6 -0.6574 4.4342 1.5954 21 6 -1.3279 5.7608 1.3473 22 8 0.5621 4.0841 1.1761 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8901 28 1 0.8368 0.0527 -3.2662 29 1 2.9609 2.8350 1.1818 30 1 2.3679 1.4098 2.0678 31 1 -0.2327 1.3505 2.7087 32 1 -4.3896 1.2737 4.6997 33 1 -4.2569 3.0317 4.9437 34 1 -4.9658 2.3930 3.4411 35 1 -1.0803 6.4498 2.1549 36 1 -0.9802 6.1721 0.3995 37 1 -2.4081 5.6203 1.3079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120986844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:11 Heat of formation + Delta-G solvation = -59.596513 kcal Electronic energy + Delta-G solvation = -20891.709814 eV Core-core repulsion = 17636.588741 eV Total energy + Delta-G solvation = -3255.121073 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.51627 -41.16515 -38.01764 -37.50069 -34.14909 -33.94597 -32.49177 -31.35367 -29.46183 -28.46008 -26.44908 -24.96887 -24.10942 -22.55308 -22.22443 -20.52273 -18.72423 -18.65376 -17.68830 -17.60195 -17.05716 -16.72836 -16.63324 -15.54291 -15.37134 -15.11706 -14.52335 -14.28147 -14.16150 -14.05126 -13.82594 -13.70741 -13.40894 -13.18675 -12.99757 -12.73942 -12.64785 -12.54257 -12.26797 -11.87739 -11.81188 -11.71713 -11.62382 -11.39429 -10.71979 -10.39745 -9.34272 -8.88477 -7.78394 -5.20652 0.13042 1.09403 1.49316 1.51616 1.58179 1.63412 1.99813 2.03469 2.54213 3.30050 3.59640 3.72863 3.77149 3.96903 4.29555 4.33289 4.33573 4.46794 4.58553 4.62629 4.67930 4.73214 4.78334 4.83107 4.96754 5.11803 5.15303 5.24452 5.30188 5.33426 5.47114 5.60469 5.84721 6.19787 6.21183 6.36898 6.68648 7.20020 7.86088 8.24704 9.19452 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.005597 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.633490 B = 5001.804273 C = 5412.473651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.168 3.832 3 N -0.594 5.594 4 C -0.259 4.259 5 H 0.074 0.926 6 C -0.050 4.050 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.300 1.300 11 H -0.276 1.276 12 C 0.212 3.788 13 C -0.012 4.012 14 C -0.180 4.180 15 C -0.262 4.262 16 C 0.547 3.453 17 O -0.533 6.533 18 O -0.360 6.360 19 C 0.030 3.970 20 C 0.073 3.927 21 C -0.078 4.078 22 O -0.178 6.178 23 H 0.028 0.972 24 H 0.034 0.966 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.245 0.755 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.163 0.837 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 4.097 12.054 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 N -0.314 5.314 4 C -0.389 4.389 5 H 0.092 0.908 6 C -0.244 4.244 7 N -0.564 5.564 8 Si 0.793 3.207 9 H -0.210 1.210 10 H -0.227 1.227 11 H -0.201 1.201 12 C 0.084 3.916 13 C -0.064 4.064 14 C -0.200 4.200 15 C -0.265 4.265 16 C 0.395 3.605 17 O -0.425 6.425 18 O -0.276 6.276 19 C -0.063 4.063 20 C 0.019 3.981 21 C -0.134 4.134 22 O -0.073 6.073 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.181 0.819 32 H 0.151 0.849 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.037 4.405 11.730 13.505 hybrid contribution -0.325 -0.025 -1.013 1.064 sum -5.362 4.381 10.717 12.759 Atomic orbital electron populations 1.22264 0.99010 0.98507 1.00348 1.20832 0.92691 0.83838 0.98342 1.44644 1.74532 1.10321 1.01904 1.19587 1.29013 1.05851 0.84470 0.90803 1.25507 0.98529 1.00167 1.00241 1.70329 1.30522 1.30813 1.24757 0.85330 0.77864 0.77921 0.79558 1.21045 1.22677 1.20110 1.19932 0.88596 0.93635 0.89438 1.24732 1.02362 0.81848 0.97482 1.22532 0.92258 1.00001 1.05230 1.20301 0.95897 0.97977 1.12294 1.19955 0.85246 0.80299 0.75038 1.90754 1.54730 1.37434 1.59630 1.86584 1.38159 1.38664 1.64225 1.23602 0.79497 1.05556 0.97674 1.23379 0.83616 0.97702 0.93397 1.20693 1.00154 0.87886 1.04676 1.83822 1.30615 1.31175 1.61709 0.95257 0.94744 0.93209 0.91864 0.94799 0.94482 0.90956 0.87313 0.81916 0.84942 0.91265 0.91973 0.87220 0.88984 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 9.54 71.98 0.69 -5.89 16 2 C 0.17 7.76 5.64 86.38 0.49 8.24 16 3 N -0.59 -28.00 2.52 -706.32 -1.78 -29.78 16 4 C -0.26 -13.65 9.74 84.03 0.82 -12.83 16 5 H 0.07 3.83 7.87 -2.91 -0.02 3.80 16 6 C -0.05 -2.66 5.04 84.86 0.43 -2.24 16 7 N -0.92 -51.46 8.18 21.65 0.18 -51.28 16 8 Si 0.96 44.20 29.59 68.60 2.03 46.23 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.21 8.05 6.22 85.63 0.53 8.58 16 13 C -0.01 -0.49 6.58 24.75 0.16 -0.32 16 14 C -0.18 -6.59 8.82 23.65 0.21 -6.38 16 15 C -0.26 -9.51 6.32 -19.00 -0.12 -9.63 16 16 C 0.55 18.49 7.95 70.19 0.56 19.05 16 17 O -0.53 -18.42 14.64 19.71 0.29 -18.13 16 18 O -0.36 -10.65 10.48 -56.82 -0.60 -11.25 16 19 C 0.03 0.59 10.57 113.37 1.20 1.78 16 20 C 0.07 2.57 7.38 25.28 0.19 2.76 16 21 C -0.08 -2.08 9.89 71.23 0.70 -1.38 16 22 O -0.18 -7.06 10.52 4.60 0.05 -7.01 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.03 1.47 4.90 -2.38 -0.01 1.46 16 25 H 0.05 2.71 6.20 -2.39 -0.01 2.70 16 26 H 0.06 3.33 5.88 -2.39 -0.01 3.31 16 27 H 0.03 1.35 7.97 -2.38 -0.02 1.34 16 28 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 29 H 0.07 2.62 8.02 -2.39 -0.02 2.60 16 30 H 0.11 3.42 7.95 -2.39 -0.02 3.40 16 31 H 0.16 5.47 7.49 -2.91 -0.02 5.44 16 32 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.10 2.71 6.49 -2.38 -0.02 2.69 16 Total: -1.00 -64.06 310.87 7.10 -56.97 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.08 Total: 12.51 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.85 Total: 1.75 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.60 Total: -81.06 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.26 Total: -36.39 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.06 7.10 -56.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120986844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.630 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds