Wall clock time and date at job start Mon Mar 30 2020 00:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99627 * 2 1 4 4 C 1.52995 * 109.47147 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47128 * 64.99987 * 4 3 2 6 6 C 1.46495 * 120.00409 * 270.00372 * 5 4 3 7 7 C 1.50695 * 109.47132 * 269.99758 * 6 5 4 8 8 H 1.08000 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00412 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00167 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99716 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47189 * 89.99443 * 11 9 7 13 13 H 1.48498 * 109.46926 * 209.99798 * 11 9 7 14 14 H 1.48504 * 109.47117 * 329.99712 * 11 9 7 15 15 C 1.34785 * 119.99744 * 90.00070 * 5 4 3 16 16 O 1.21280 * 119.99805 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99810 * 0.02562 * 15 5 4 18 18 C 1.50700 * 109.46699 * 180.02562 * 17 15 5 19 19 C 1.41385 * 126.58187 * 90.00677 * 18 17 15 20 20 C 1.34512 * 106.83926 * 180.25995 * 19 18 17 21 21 O 1.34305 * 108.42433 * 359.63135 * 20 19 18 22 22 C 1.34305 * 109.47225 * 0.37505 * 21 20 19 23 23 H 1.09009 * 109.46872 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47175 * 299.99478 * 1 2 3 25 25 H 1.08999 * 109.47489 * 59.99641 * 1 2 3 26 26 H 1.09005 * 109.47329 * 60.00634 * 3 2 1 27 27 H 1.09001 * 109.47539 * 300.00584 * 3 2 1 28 28 H 1.08994 * 109.47687 * 305.00400 * 4 3 2 29 29 H 1.09002 * 109.47751 * 185.00214 * 4 3 2 30 30 H 1.09006 * 109.46949 * 29.99564 * 6 5 4 31 31 H 1.08993 * 109.47501 * 149.99638 * 6 5 4 32 32 H 0.97007 * 119.99723 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47178 * 60.00305 * 17 15 5 34 34 H 1.09000 * 109.47367 * 300.00226 * 17 15 5 35 35 H 1.08002 * 126.57514 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.78467 * 179.77218 * 20 19 18 37 37 H 1.08000 * 125.78555 * 179.79179 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8919 -1.3430 7 6 5.5009 -1.2976 -0.9452 8 1 6.2195 -0.5458 -0.6539 9 6 5.8604 -2.6287 -0.9521 10 7 7.0786 -2.9826 -0.6054 11 14 4.6174 -3.9292 -1.4552 12 1 4.7026 -4.1548 -2.9204 13 1 4.9114 -5.1975 -0.7410 14 1 3.2498 -3.4689 -1.1039 15 6 4.2614 1.3340 -2.3219 16 8 4.6254 0.8205 -3.3586 17 6 4.1286 2.8322 -2.2290 18 6 4.5039 3.4526 -3.5501 19 6 3.6336 3.7250 -4.6306 20 6 4.3822 4.2706 -5.6059 21 8 5.6510 4.3502 -5.1729 22 6 5.7313 3.8528 -3.9279 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8464 0.8901 27 1 1.6884 1.8465 -0.8899 28 1 3.8515 0.5683 0.8408 29 1 3.9785 2.1766 0.0890 30 1 3.3852 -1.3628 -0.6735 31 1 3.9120 -1.2112 -2.3670 32 1 7.3316 -3.9191 -0.6106 33 1 4.7912 3.2081 -1.4494 34 1 3.0981 3.0913 -1.9860 35 1 2.5723 3.5281 -4.6676 36 1 4.0233 4.5925 -6.5723 37 1 6.6290 3.7858 -3.3313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123205766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:46 Heat of formation + Delta-G solvation = -57.936207 kcal Electronic energy + Delta-G solvation = -20600.904698 eV Core-core repulsion = 17345.855621 eV Total energy + Delta-G solvation = -3255.049077 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.35430 -39.17728 -37.58548 -34.93024 -33.75949 -32.52454 -30.36696 -29.75718 -28.32102 -26.77081 -26.02594 -22.73164 -22.40418 -21.42928 -20.30587 -18.44028 -17.23525 -16.89815 -16.79084 -16.10260 -15.72567 -15.43810 -15.20499 -14.84507 -14.51300 -14.25650 -13.86584 -13.11278 -12.77632 -12.64252 -12.55923 -12.22648 -12.07944 -11.91179 -11.75501 -11.49353 -11.29131 -10.95447 -10.76833 -10.36018 -10.03786 -9.63058 -9.53182 -9.44628 -8.91849 -8.49258 -8.31679 -7.63148 -6.00387 -3.97591 1.96252 2.74858 3.31797 3.37321 3.39752 3.43162 3.47594 3.90055 3.99640 4.49292 4.91095 4.97730 5.05510 5.17240 5.22449 5.32873 5.37116 5.40033 5.43796 5.51244 5.58990 5.63301 5.67605 5.74510 5.86157 6.17431 6.19681 6.32398 6.64034 6.97962 7.11153 7.28239 7.30457 7.44319 7.73462 8.34970 8.56138 9.00886 9.07473 9.61370 11.13135 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.006511 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.630916 B = 4299.556900 C = 5539.393960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.587 5.587 6 C 0.220 3.780 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.505 3.495 16 O -0.531 6.531 17 C -0.073 4.073 18 C -0.156 4.156 19 C -0.198 4.198 20 C -0.051 4.051 21 O -0.179 6.179 22 C -0.028 4.028 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.198 0.802 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 15.073 -0.799 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.035 4.035 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.099 3.901 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.292 3.708 16 O -0.407 6.407 17 C -0.113 4.113 18 C -0.158 4.158 19 C -0.217 4.217 20 C -0.118 4.118 21 O -0.075 6.075 22 C -0.095 4.095 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.215 0.785 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.026 14.554 -1.492 18.320 hybrid contribution -0.981 -0.688 -0.042 1.199 sum -12.008 13.866 -1.533 18.407 Atomic orbital electron populations 1.22709 0.81960 1.02556 0.99301 1.88067 1.18824 1.27271 1.95185 1.23155 0.95385 0.85290 0.99700 1.21545 0.91020 0.99336 0.89439 1.47849 1.65018 1.08841 1.10156 1.19656 0.97574 0.75073 0.97765 1.21375 0.96205 0.93487 1.45310 0.90943 1.24828 0.95151 0.98362 0.94683 1.69904 1.18168 1.17177 1.48780 0.86873 0.82557 0.81336 0.79184 1.20122 1.21220 1.18640 1.20291 0.78316 0.88229 0.83999 1.90683 1.45819 1.74816 1.29378 1.20123 1.03186 0.93376 0.94654 1.19857 0.93780 1.04734 0.97448 1.21630 1.00834 1.05093 0.94146 1.23858 0.81318 1.06195 1.00456 1.84036 1.29960 1.64818 1.28673 1.23806 0.99492 1.01887 0.84352 0.89876 0.94471 0.94532 0.92807 0.93628 0.88746 0.89680 0.94007 0.95106 0.92721 0.88549 0.88932 0.83937 0.78497 0.78289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.02 9.53 -35.23 -0.34 -6.36 16 3 C 0.04 0.56 6.28 37.15 0.23 0.79 16 4 C 0.11 1.71 5.62 -4.04 -0.02 1.69 16 5 N -0.59 -12.18 2.42 -175.06 -0.42 -12.61 16 6 C 0.22 5.59 4.05 -5.20 -0.02 5.57 16 7 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 11 Si 0.87 22.45 27.47 -169.99 -4.67 17.78 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 15 C 0.51 10.38 7.67 -10.98 -0.08 10.29 16 16 O -0.53 -13.52 15.61 5.56 0.09 -13.44 16 17 C -0.07 -1.06 4.77 -29.03 -0.14 -1.20 16 18 C -0.16 -2.39 4.66 -104.74 -0.49 -2.88 16 19 C -0.20 -2.76 10.87 -39.70 -0.43 -3.19 16 20 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 21 O -0.18 -2.59 10.65 5.70 0.06 -2.53 16 22 C -0.03 -0.40 12.01 29.42 0.35 -0.05 16 23 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.56 7.30 -51.93 -0.38 0.18 16 28 H 0.09 1.57 8.07 -51.93 -0.42 1.16 16 29 H 0.09 1.00 6.44 -51.93 -0.33 0.67 16 30 H 0.04 1.05 6.17 -51.93 -0.32 0.73 16 31 H 0.03 0.85 6.85 -51.93 -0.36 0.50 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.10 1.17 7.40 -51.93 -0.38 0.78 16 34 H 0.09 1.09 7.26 -51.93 -0.38 0.72 16 35 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.20 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.20 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -37.61 317.42 -4.41 -42.02 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.12 Total: -0.49 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.43 Total: -1.53 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.35 Total: -40.25 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.19 Total: -22.32 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.61 -4.41 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123205766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.911 kcal (2) G-P(sol) polarization free energy of solvation -37.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds