Wall clock time and date at job start Mon Mar 30 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99627 * 2 1 4 4 C 1.52995 * 109.47147 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47128 * 64.99987 * 4 3 2 6 6 C 1.46495 * 120.00409 * 270.00372 * 5 4 3 7 7 C 1.50695 * 109.47132 * 269.99758 * 6 5 4 8 8 H 1.08000 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00412 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00167 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99716 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47189 * 89.99443 * 11 9 7 13 13 H 1.48498 * 109.46926 * 209.99798 * 11 9 7 14 14 H 1.48504 * 109.47117 * 329.99712 * 11 9 7 15 15 C 1.34785 * 119.99744 * 90.00070 * 5 4 3 16 16 O 1.21280 * 119.99805 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99810 * 0.02562 * 15 5 4 18 18 C 1.50700 * 109.46699 * 180.02562 * 17 15 5 19 19 C 1.41385 * 126.58187 * 90.00677 * 18 17 15 20 20 C 1.34512 * 106.83926 * 180.25995 * 19 18 17 21 21 O 1.34305 * 108.42433 * 359.63135 * 20 19 18 22 22 C 1.34305 * 109.47225 * 0.37505 * 21 20 19 23 23 H 1.09009 * 109.46872 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47175 * 299.99478 * 1 2 3 25 25 H 1.08999 * 109.47489 * 59.99641 * 1 2 3 26 26 H 1.09005 * 109.47329 * 60.00634 * 3 2 1 27 27 H 1.09001 * 109.47539 * 300.00584 * 3 2 1 28 28 H 1.08994 * 109.47687 * 305.00400 * 4 3 2 29 29 H 1.09002 * 109.47751 * 185.00214 * 4 3 2 30 30 H 1.09006 * 109.46949 * 29.99564 * 6 5 4 31 31 H 1.08993 * 109.47501 * 149.99638 * 6 5 4 32 32 H 0.97007 * 119.99723 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47178 * 60.00305 * 17 15 5 34 34 H 1.09000 * 109.47367 * 300.00226 * 17 15 5 35 35 H 1.08002 * 126.57514 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.78467 * 179.77218 * 20 19 18 37 37 H 1.08000 * 125.78555 * 179.79179 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1052 -0.8919 -1.3430 7 6 5.5009 -1.2976 -0.9452 8 1 6.2195 -0.5458 -0.6539 9 6 5.8604 -2.6287 -0.9521 10 7 7.0786 -2.9826 -0.6054 11 14 4.6174 -3.9292 -1.4552 12 1 4.7026 -4.1548 -2.9204 13 1 4.9114 -5.1975 -0.7410 14 1 3.2498 -3.4689 -1.1039 15 6 4.2614 1.3340 -2.3219 16 8 4.6254 0.8205 -3.3586 17 6 4.1286 2.8322 -2.2290 18 6 4.5039 3.4526 -3.5501 19 6 3.6336 3.7250 -4.6306 20 6 4.3822 4.2706 -5.6059 21 8 5.6510 4.3502 -5.1729 22 6 5.7313 3.8528 -3.9279 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8464 0.8901 27 1 1.6884 1.8465 -0.8899 28 1 3.8515 0.5683 0.8408 29 1 3.9785 2.1766 0.0890 30 1 3.3852 -1.3628 -0.6735 31 1 3.9120 -1.2112 -2.3670 32 1 7.3316 -3.9191 -0.6106 33 1 4.7912 3.2081 -1.4494 34 1 3.0981 3.0913 -1.9860 35 1 2.5723 3.5281 -4.6676 36 1 4.0233 4.5925 -6.5723 37 1 6.6290 3.7858 -3.3313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123205766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:45 Heat of formation + Delta-G solvation = -85.537678 kcal Electronic energy + Delta-G solvation = -20602.101587 eV Core-core repulsion = 17345.855621 eV Total energy + Delta-G solvation = -3256.245966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.40027 -40.72076 -38.72608 -36.55042 -35.03499 -34.61185 -31.76025 -31.03155 -29.72361 -28.26257 -27.06525 -24.37481 -23.91784 -22.44177 -21.52228 -19.89519 -19.10518 -18.35750 -18.13819 -17.28068 -16.94907 -16.78324 -16.61206 -16.10207 -15.91615 -15.52005 -15.36841 -14.72053 -14.36296 -14.04175 -13.79406 -13.63438 -13.56058 -13.11183 -13.07727 -12.86957 -12.67835 -12.48837 -12.37022 -11.99831 -11.90396 -11.72286 -10.89646 -10.81214 -10.52063 -10.39580 -9.39330 -9.34492 -8.33406 -6.36183 0.91543 1.30995 1.33768 1.44693 1.64705 1.86277 2.31317 2.33674 2.47841 2.98017 3.03075 3.78256 3.93675 3.96811 4.16052 4.21185 4.31825 4.43456 4.54058 4.56498 4.60904 4.63045 4.65105 4.80790 4.88182 4.98661 5.01613 5.02597 5.15146 5.33145 5.49538 5.62620 5.68008 6.23740 6.26498 6.35507 6.64362 6.79509 7.24533 7.49244 8.83442 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.006511 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.630916 B = 4299.556900 C = 5539.393960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.045 3.955 4 C 0.102 3.898 5 N -0.594 5.594 6 C 0.235 3.765 7 C -0.531 4.531 8 H 0.033 0.967 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.272 1.272 14 H -0.244 1.244 15 C 0.497 3.503 16 O -0.592 6.592 17 C -0.058 4.058 18 C -0.179 4.179 19 C -0.220 4.220 20 C -0.046 4.046 21 O -0.191 6.191 22 C -0.046 4.046 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.048 0.952 31 H 0.005 0.995 32 H 0.267 0.733 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.158 0.842 36 H 0.237 0.763 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 16.512 -0.536 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.325 5.325 6 C 0.113 3.887 7 C -0.570 4.570 8 H 0.051 0.949 9 C -0.185 4.185 10 N -0.585 5.585 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.197 1.197 14 H -0.167 1.167 15 C 0.286 3.714 16 O -0.473 6.473 17 C -0.097 4.097 18 C -0.180 4.180 19 C -0.239 4.239 20 C -0.112 4.112 21 O -0.087 6.087 22 C -0.113 4.113 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.144 0.856 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.175 0.825 36 H 0.253 0.747 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.471 16.040 -1.180 20.979 hybrid contribution -0.183 -1.064 -0.120 1.086 sum -13.654 14.976 -1.299 20.307 Atomic orbital electron populations 1.22865 0.79972 1.03129 1.00896 1.87995 1.21179 1.29156 1.95571 1.23197 0.93046 0.84791 1.02136 1.21940 0.93451 1.00485 0.86159 1.47923 1.65007 1.07115 1.12408 1.19164 0.94933 0.78718 0.95900 1.21620 0.97521 0.92913 1.44903 0.94912 1.25763 0.97225 1.00925 0.94635 1.70040 1.20310 1.18018 1.50180 0.85799 0.80667 0.78573 0.78482 1.20408 1.19715 1.16698 1.21377 0.76556 0.90678 0.82778 1.90645 1.48511 1.76439 1.31690 1.20115 1.06027 0.88153 0.95446 1.20144 0.94425 1.05203 0.98274 1.21954 1.01783 1.05850 0.94278 1.24665 0.80363 1.04669 1.01537 1.84039 1.31046 1.64945 1.28653 1.24197 1.00152 1.02214 0.84747 0.90000 0.92053 0.93641 0.88891 0.92357 0.90650 0.85614 0.93438 0.97646 0.92362 0.85785 0.85408 0.82463 0.74662 0.77029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.42 -12.55 9.53 -148.98 -1.42 -13.97 16 3 C 0.05 1.04 6.28 71.98 0.45 1.49 16 4 C 0.10 2.94 5.62 86.38 0.49 3.42 16 5 N -0.59 -24.41 2.42 -826.16 -2.00 -26.41 16 6 C 0.24 12.16 4.05 85.63 0.35 12.50 16 7 C -0.53 -32.32 9.94 25.60 0.25 -32.06 16 8 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 9 C 0.01 0.75 5.47 84.66 0.46 1.22 16 10 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 11 Si 0.94 46.98 27.47 68.60 1.88 48.87 16 12 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.24 -11.33 6.54 99.48 0.65 -10.68 16 15 C 0.50 20.19 7.67 87.66 0.67 20.86 16 16 O -0.59 -30.89 15.61 -3.03 -0.05 -30.93 16 17 C -0.06 -1.55 4.77 29.10 0.14 -1.41 16 18 C -0.18 -5.19 4.66 -19.94 -0.09 -5.28 16 19 C -0.22 -5.72 10.87 22.19 0.24 -5.48 16 20 C -0.05 -1.06 12.09 66.97 0.81 -0.25 16 21 O -0.19 -5.31 10.65 -2.52 -0.03 -5.34 16 22 C -0.05 -1.30 12.01 66.97 0.80 -0.50 16 23 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.06 1.19 7.30 -2.39 -0.02 1.17 16 28 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 29 H 0.13 2.52 6.44 -2.39 -0.02 2.50 16 30 H 0.05 2.39 6.17 -2.38 -0.01 2.38 16 31 H 0.01 0.31 6.85 -2.39 -0.02 0.29 16 32 H 0.27 16.12 8.31 -92.70 -0.77 15.35 16 33 H 0.12 2.60 7.40 -2.38 -0.02 2.58 16 34 H 0.13 2.49 7.26 -2.39 -0.02 2.47 16 35 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.21 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -86.15 317.42 5.52 -80.63 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.00 Total: 11.76 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.82 Total: -3.67 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.70 Total: -87.35 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.49 Total: -50.24 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.87 kcal Total: -86.15 5.52 -80.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123205766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.909 kcal (2) G-P(sol) polarization free energy of solvation -86.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds