Wall clock time and date at job start Mon Mar 30 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99659 * 2 1 4 4 O 1.20822 * 120.00196 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99392 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46794 * 180.02562 * 5 3 2 7 7 C 1.36814 * 120.00128 * 264.79291 * 6 5 3 8 8 H 1.08003 * 120.00691 * 140.09518 * 7 6 5 9 9 C 1.39074 * 120.00119 * 320.09578 * 7 6 5 10 10 N 1.31349 * 120.00271 * 158.45521 * 9 7 6 11 11 Si 1.86805 * 119.99695 * 338.45982 * 9 7 6 12 12 H 1.48501 * 109.47240 * 92.77717 * 11 9 7 13 13 H 1.48507 * 109.47010 * 212.77969 * 11 9 7 14 14 H 1.48493 * 109.46962 * 332.77482 * 11 9 7 15 15 C 1.34777 * 120.00220 * 84.78686 * 6 5 3 16 16 O 1.21663 * 120.00124 * 5.11318 * 15 6 5 17 17 C 1.46951 * 120.00099 * 185.10380 * 15 6 5 18 18 C 1.31684 * 118.11083 * 79.92603 * 17 15 6 19 19 C 1.50099 * 123.77047 * 180.42116 * 18 17 15 20 20 C 1.53004 * 110.13427 * 342.82104 * 19 18 17 21 21 C 1.53048 * 108.47266 * 49.73721 * 20 19 18 22 22 C 1.50099 * 118.11441 * 259.90000 * 17 15 6 23 23 H 1.09003 * 109.47117 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47149 * 300.00139 * 1 2 3 25 25 H 1.09005 * 109.47243 * 60.00043 * 1 2 3 26 26 H 1.08991 * 109.47584 * 60.00338 * 5 3 2 27 27 H 1.08997 * 109.47231 * 299.99660 * 5 3 2 28 28 H 0.97007 * 119.99712 * 180.02562 * 10 9 7 29 29 H 1.07997 * 118.11431 * 0.43171 * 18 17 15 30 30 H 1.08997 * 109.36249 * 103.02643 * 19 18 17 31 31 H 1.09007 * 109.35707 * 222.62071 * 19 18 17 32 32 H 1.09000 * 109.63206 * 169.48310 * 20 19 18 33 33 H 1.08995 * 109.63066 * 290.06413 * 20 19 18 34 34 H 1.08999 * 109.47017 * 172.18043 * 21 20 19 35 35 H 1.09010 * 109.63729 * 51.69494 * 21 20 19 36 36 H 1.09007 * 109.35935 * 283.03531 * 22 17 15 37 37 H 1.09003 * 109.36419 * 42.76001 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2782 3.3061 -1.1795 8 1 3.9674 4.3276 -1.3417 9 6 4.9801 2.6273 -2.1699 10 7 4.9078 3.0288 -3.4185 11 14 6.0253 1.1446 -1.7245 12 1 5.2193 -0.0932 -1.8774 13 1 7.2046 1.0818 -2.6250 14 1 6.4832 1.2665 -0.3172 15 6 4.0715 3.3554 1.1629 16 8 3.8986 2.7755 2.2184 17 6 4.3786 4.7924 1.1559 18 6 3.3999 5.6348 0.8978 19 6 3.5727 7.1250 0.8492 20 6 4.8773 7.5267 1.5403 21 6 6.0081 6.6584 0.9839 22 6 5.7896 5.2156 1.4440 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.9557 0.7810 -0.8908 27 1 3.9564 0.7806 0.8891 28 1 5.3971 2.5551 -4.1093 29 1 2.4163 5.2301 0.7104 30 1 3.5988 7.4521 -0.1902 31 1 2.7337 7.6027 1.3553 32 1 5.0890 8.5772 1.3408 33 1 4.7871 7.3661 2.6146 34 1 6.9643 7.0220 1.3604 35 1 6.0004 6.7005 -0.1053 36 1 5.9761 5.1459 2.5157 37 1 6.4793 4.5589 0.9138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128456691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:42 Heat of formation + Delta-G solvation = -102.100155 kcal Electronic energy + Delta-G solvation = -21304.287237 eV Core-core repulsion = 18047.323068 eV Total energy + Delta-G solvation = -3256.964169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08414 -39.06373 -37.20196 -35.88033 -34.84185 -32.05380 -30.98785 -30.28227 -28.70642 -26.55339 -24.98587 -23.00915 -22.24874 -20.95120 -19.52091 -18.06449 -17.34641 -16.89919 -16.47031 -15.88941 -15.44671 -15.22933 -14.81964 -14.05636 -13.92824 -13.43315 -13.31740 -13.09224 -12.84390 -12.78777 -12.24934 -12.03204 -11.92879 -11.83188 -11.77771 -11.55782 -11.03637 -10.62548 -10.43716 -10.40605 -10.36903 -10.13646 -9.98821 -9.93017 -9.28826 -8.71453 -8.22344 -7.93287 -6.54451 -4.16579 2.64237 2.83587 2.94360 3.04143 3.17600 3.21517 3.68212 4.02668 4.33885 4.85039 5.18469 5.22531 5.27420 5.35335 5.42998 5.43700 5.67914 5.75507 5.78195 5.79293 5.87739 5.93788 5.97680 6.00366 6.18823 6.27730 6.34972 6.48269 6.59986 6.70877 6.82440 7.11699 7.15961 7.48443 7.94643 8.22352 8.36813 8.83332 9.19230 9.50302 10.55817 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.008525 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.561853 B = 3283.643153 C = 4213.545584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.491 6.491 5 C 0.104 3.896 6 N -0.444 5.444 7 C -0.339 4.339 8 H 0.110 0.890 9 C 0.068 3.932 10 N -0.851 5.851 11 Si 0.856 3.144 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.256 1.256 15 C 0.532 3.468 16 O -0.589 6.589 17 C -0.104 4.104 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.068 4.068 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.276 0.724 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 1.044 4.909 5.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.376 6.376 5 C -0.021 4.021 6 N -0.164 5.164 7 C -0.466 4.466 8 H 0.128 0.872 9 C -0.140 4.140 10 N -0.486 5.486 11 Si 0.682 3.318 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.322 3.678 16 O -0.473 6.473 17 C -0.107 4.107 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.105 4.105 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.294 1.039 5.197 5.455 hybrid contribution 0.149 -0.893 -0.269 0.945 sum -1.145 0.146 4.927 5.061 Atomic orbital electron populations 1.23140 0.77535 1.02851 1.02248 1.86526 1.22685 1.34477 1.84901 1.24758 0.92833 0.81201 0.72124 1.90600 1.66622 1.36295 1.44114 1.21439 0.86865 0.88639 1.05131 1.43343 1.57868 1.08113 1.07092 1.19084 1.35978 1.00902 0.90661 0.87216 1.25380 0.96177 0.97774 0.94663 1.69737 1.38454 1.40828 0.99562 0.87244 0.81470 0.82717 0.80361 1.19611 1.20614 1.17950 1.18693 0.78200 0.87880 0.83000 1.90665 1.55040 1.70164 1.31466 1.20326 0.96136 0.92360 1.01835 1.22286 0.98661 0.94487 0.99735 1.20387 0.97468 0.93059 1.01028 1.21540 0.95220 0.98816 1.00059 1.21515 0.97709 0.94572 1.01590 1.20192 0.93087 0.96452 1.00806 0.88702 0.92342 0.92187 0.87101 0.87239 0.91322 0.87678 0.90604 0.91580 0.92115 0.92016 0.92065 0.91082 0.91201 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.97 10.57 -39.27 -0.41 -7.38 16 3 C 0.45 10.08 7.99 36.01 0.29 10.37 16 4 O -0.49 -12.19 16.06 -18.75 -0.30 -12.49 16 5 C 0.10 2.37 4.61 -5.19 -0.02 2.35 16 6 N -0.44 -10.99 1.67 -117.49 -0.20 -11.18 16 7 C -0.34 -8.87 9.04 -15.02 -0.14 -9.00 16 8 H 0.11 3.07 6.99 -52.48 -0.37 2.70 16 9 C 0.07 1.76 5.27 -17.45 -0.09 1.67 16 10 N -0.85 -23.06 13.95 55.50 0.77 -22.29 16 11 Si 0.86 19.25 25.21 -169.99 -4.29 14.96 16 12 H -0.27 -5.74 6.59 56.52 0.37 -5.37 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 15 C 0.53 13.00 6.59 -12.73 -0.08 12.92 16 16 O -0.59 -15.42 16.74 5.22 0.09 -15.34 16 17 C -0.10 -2.20 4.24 -103.26 -0.44 -2.63 16 18 C -0.13 -2.60 8.77 -36.47 -0.32 -2.92 16 19 C -0.08 -1.26 6.11 -28.17 -0.17 -1.43 16 20 C -0.12 -1.61 5.99 -26.70 -0.16 -1.77 16 21 C -0.12 -1.72 5.97 -26.71 -0.16 -1.88 16 22 C -0.07 -1.21 5.80 -28.17 -0.16 -1.38 16 23 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 25 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.11 2.47 3.74 -51.93 -0.19 2.28 16 27 H 0.11 2.32 7.51 -51.93 -0.39 1.93 16 28 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.11 2.26 7.95 -52.49 -0.42 1.84 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.12 8.12 -51.92 -0.42 0.70 16 36 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -31.02 309.94 -5.24 -36.26 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.18 Total: 4.90 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.39 Total: 7.88 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.58 Total: -33.47 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.63 Total: -35.21 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.29 Total: 14.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.02 -5.24 -36.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128456691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.839 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds