Wall clock time and date at job start Mon Mar 30 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99659 * 2 1 4 4 O 1.20822 * 120.00196 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99392 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46794 * 180.02562 * 5 3 2 7 7 C 1.36814 * 120.00128 * 264.79291 * 6 5 3 8 8 H 1.08003 * 120.00691 * 140.09518 * 7 6 5 9 9 C 1.39074 * 120.00119 * 320.09578 * 7 6 5 10 10 N 1.31349 * 120.00271 * 158.45521 * 9 7 6 11 11 Si 1.86805 * 119.99695 * 338.45982 * 9 7 6 12 12 H 1.48501 * 109.47240 * 92.77717 * 11 9 7 13 13 H 1.48507 * 109.47010 * 212.77969 * 11 9 7 14 14 H 1.48493 * 109.46962 * 332.77482 * 11 9 7 15 15 C 1.34777 * 120.00220 * 84.78686 * 6 5 3 16 16 O 1.21663 * 120.00124 * 5.11318 * 15 6 5 17 17 C 1.46951 * 120.00099 * 185.10380 * 15 6 5 18 18 C 1.31684 * 118.11083 * 79.92603 * 17 15 6 19 19 C 1.50099 * 123.77047 * 180.42116 * 18 17 15 20 20 C 1.53004 * 110.13427 * 342.82104 * 19 18 17 21 21 C 1.53048 * 108.47266 * 49.73721 * 20 19 18 22 22 C 1.50099 * 118.11441 * 259.90000 * 17 15 6 23 23 H 1.09003 * 109.47117 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47149 * 300.00139 * 1 2 3 25 25 H 1.09005 * 109.47243 * 60.00043 * 1 2 3 26 26 H 1.08991 * 109.47584 * 60.00338 * 5 3 2 27 27 H 1.08997 * 109.47231 * 299.99660 * 5 3 2 28 28 H 0.97007 * 119.99712 * 180.02562 * 10 9 7 29 29 H 1.07997 * 118.11431 * 0.43171 * 18 17 15 30 30 H 1.08997 * 109.36249 * 103.02643 * 19 18 17 31 31 H 1.09007 * 109.35707 * 222.62071 * 19 18 17 32 32 H 1.09000 * 109.63206 * 169.48310 * 20 19 18 33 33 H 1.08995 * 109.63066 * 290.06413 * 20 19 18 34 34 H 1.08999 * 109.47017 * 172.18043 * 21 20 19 35 35 H 1.09010 * 109.63729 * 51.69494 * 21 20 19 36 36 H 1.09007 * 109.35935 * 283.03531 * 22 17 15 37 37 H 1.09003 * 109.36419 * 42.76001 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2782 3.3061 -1.1795 8 1 3.9674 4.3276 -1.3417 9 6 4.9801 2.6273 -2.1699 10 7 4.9078 3.0288 -3.4185 11 14 6.0253 1.1446 -1.7245 12 1 5.2193 -0.0932 -1.8774 13 1 7.2046 1.0818 -2.6250 14 1 6.4832 1.2665 -0.3172 15 6 4.0715 3.3554 1.1629 16 8 3.8986 2.7755 2.2184 17 6 4.3786 4.7924 1.1559 18 6 3.3999 5.6348 0.8978 19 6 3.5727 7.1250 0.8492 20 6 4.8773 7.5267 1.5403 21 6 6.0081 6.6584 0.9839 22 6 5.7896 5.2156 1.4440 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.9557 0.7810 -0.8908 27 1 3.9564 0.7806 0.8891 28 1 5.3971 2.5551 -4.1093 29 1 2.4163 5.2301 0.7104 30 1 3.5988 7.4521 -0.1902 31 1 2.7337 7.6027 1.3553 32 1 5.0890 8.5772 1.3408 33 1 4.7871 7.3661 2.6146 34 1 6.9643 7.0220 1.3604 35 1 6.0004 6.7005 -0.1053 36 1 5.9761 5.1459 2.5157 37 1 6.4793 4.5589 0.9138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128456691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:42 Heat of formation + Delta-G solvation = -120.812736 kcal Electronic energy + Delta-G solvation = -21305.098675 eV Core-core repulsion = 18047.323068 eV Total energy + Delta-G solvation = -3257.775608 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84434 -40.77418 -38.65916 -37.59101 -36.77921 -34.06226 -32.47068 -31.61769 -30.32197 -27.99259 -26.94460 -24.41358 -23.67347 -22.56623 -21.26234 -19.83744 -19.07878 -18.60685 -18.06693 -17.51557 -17.16567 -17.07769 -16.47675 -15.69736 -15.47732 -14.99937 -14.66618 -14.66562 -14.51765 -14.35590 -13.91017 -13.63604 -13.49010 -13.21919 -13.19125 -13.03113 -12.90792 -12.43700 -11.99553 -11.87558 -11.83770 -11.74570 -11.59673 -11.27752 -11.12204 -10.53251 -10.00778 -9.68176 -8.54870 -6.21954 1.01382 1.06246 1.15324 1.29773 1.40920 1.47371 1.87451 2.13710 2.55504 2.89663 3.76898 3.83383 3.90022 3.92985 4.09256 4.11696 4.25816 4.26813 4.36665 4.43618 4.51577 4.60385 4.69651 4.74930 4.98573 5.05313 5.10098 5.16288 5.20144 5.24454 5.31957 5.53103 5.63135 5.93014 6.01184 6.13435 6.64361 6.83817 7.20168 7.55305 8.58809 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.008525 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.561853 B = 3283.643153 C = 4213.545584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.525 6.525 5 C 0.095 3.905 6 N -0.451 5.451 7 C -0.342 4.342 8 H 0.079 0.921 9 C 0.033 3.967 10 N -0.888 5.888 11 Si 0.909 3.091 12 H -0.246 1.246 13 H -0.272 1.272 14 H -0.258 1.258 15 C 0.521 3.479 16 O -0.614 6.614 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.066 4.066 23 H 0.143 0.857 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.283 0.717 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 0.838 5.508 5.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.294 3.706 4 O -0.413 6.413 5 C -0.030 4.030 6 N -0.171 5.171 7 C -0.469 4.469 8 H 0.096 0.904 9 C -0.173 4.173 10 N -0.523 5.523 11 Si 0.732 3.268 12 H -0.171 1.171 13 H -0.198 1.198 14 H -0.182 1.182 15 C 0.313 3.687 16 O -0.500 6.500 17 C -0.134 4.134 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.150 4.150 21 C -0.149 4.149 22 C -0.103 4.103 23 H 0.161 0.839 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.135 0.865 27 H 0.142 0.858 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.752 0.806 5.786 5.890 hybrid contribution -0.183 -0.879 -0.470 1.014 sum -0.936 -0.073 5.316 5.398 Atomic orbital electron populations 1.23581 0.74734 1.05995 1.02223 1.86490 1.25269 1.32170 1.84028 1.24598 0.92805 0.81706 0.71456 1.90587 1.67285 1.37593 1.45867 1.21560 0.87658 0.87745 1.06034 1.43392 1.58103 1.08897 1.06686 1.18796 1.36709 1.00118 0.91304 0.90373 1.25925 0.96604 1.00579 0.94171 1.69802 1.39381 1.42652 1.00501 0.86394 0.80178 0.80336 0.79928 1.17124 1.19772 1.18152 1.19362 0.77412 0.89339 0.82564 1.90619 1.56250 1.71130 1.32048 1.20562 0.98316 0.90751 1.03747 1.22504 0.96842 0.97186 0.98068 1.20488 0.99797 0.89615 1.01894 1.21547 0.93171 1.00250 0.99994 1.21512 0.99913 0.92696 1.00766 1.20249 0.90440 0.98312 1.01333 0.83936 0.92321 0.92387 0.86535 0.85798 0.90688 0.90753 0.90259 0.89369 0.88848 0.91368 0.89011 0.92559 0.90095 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -13.25 10.57 -51.47 -0.54 -13.79 16 3 C 0.45 20.31 7.99 71.24 0.57 20.88 16 4 O -0.53 -26.69 16.06 21.97 0.35 -26.33 16 5 C 0.09 4.30 4.61 85.63 0.39 4.69 16 6 N -0.45 -22.81 1.67 -643.87 -1.07 -23.88 16 7 C -0.34 -18.43 9.04 84.12 0.76 -17.67 16 8 H 0.08 4.62 6.99 -2.91 -0.02 4.60 16 9 C 0.03 1.70 5.27 84.97 0.45 2.15 16 10 N -0.89 -48.69 13.95 21.68 0.30 -48.39 16 11 Si 0.91 39.11 25.21 68.60 1.73 40.84 16 12 H -0.25 -9.64 6.59 99.48 0.66 -8.98 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 14 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 15 C 0.52 26.21 6.59 86.53 0.57 26.78 16 16 O -0.61 -32.84 16.74 -4.23 -0.07 -32.91 16 17 C -0.13 -5.67 4.24 -18.44 -0.08 -5.75 16 18 C -0.13 -5.10 8.77 24.82 0.22 -4.88 16 19 C -0.08 -2.38 6.11 29.66 0.18 -2.19 16 20 C -0.11 -2.73 5.99 30.61 0.18 -2.54 16 21 C -0.11 -3.09 5.97 30.61 0.18 -2.91 16 22 C -0.07 -2.34 5.80 29.66 0.17 -2.17 16 23 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.06 1.61 8.13 -2.38 -0.02 1.60 16 26 H 0.12 5.08 3.74 -2.39 -0.01 5.07 16 27 H 0.12 5.20 7.51 -2.39 -0.02 5.18 16 28 H 0.28 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.07 3.38 7.95 -2.91 -0.02 3.36 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 36 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -68.95 309.94 6.51 -62.44 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 1.02 Total: 23.69 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 4.80 Total: 18.33 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -0.77 Total: -72.27 kcal Atomic # 8 Polarization: -72.77 SS G_CDS: -0.26 Total: -73.03 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.73 Total: 40.84 kcal Total: -68.95 6.51 -62.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128456691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.374 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds