Wall clock time and date at job start Mon Mar 30 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34893 * 116.99616 * 2 1 4 4 O 1.21627 * 120.00407 * 0.02562 * 3 2 1 5 5 C 1.46475 * 119.99764 * 180.02562 * 3 2 1 6 6 O 1.34935 * 125.99725 * 359.97347 * 5 3 2 7 7 C 1.33911 * 109.37832 * 179.97438 * 6 5 3 8 8 C 1.35166 * 108.78467 * 0.02562 * 7 6 5 9 9 C 1.36648 * 125.99282 * 180.29823 * 5 3 2 10 10 C 1.50699 * 126.65244 * 359.97438 * 9 5 3 11 11 N 1.46900 * 109.46897 * 80.21081 * 10 9 5 12 12 C 1.46896 * 111.00132 * 66.04898 * 11 10 9 13 13 C 1.46909 * 110.99612 * 189.99809 * 11 10 9 14 14 H 1.08997 * 109.47010 * 300.00416 * 13 11 10 15 15 C 1.53003 * 109.46812 * 60.00170 * 13 11 10 16 16 C 1.50696 * 109.46785 * 179.97438 * 13 11 10 17 17 H 1.07997 * 120.00587 * 0.02562 * 16 13 11 18 18 C 1.37885 * 119.99701 * 180.02562 * 16 13 11 19 19 N 1.31517 * 120.00030 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99961 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47196 * 119.99920 * 20 18 16 23 23 H 1.48501 * 109.46670 * 240.00319 * 20 18 16 24 24 H 1.09003 * 109.46690 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47386 * 299.99352 * 1 2 3 26 26 H 1.08994 * 109.47203 * 59.99818 * 1 2 3 27 27 H 1.08000 * 125.60046 * 179.97438 * 7 6 5 28 28 H 1.08002 * 126.43313 * 179.97438 * 8 7 6 29 29 H 1.09001 * 109.47110 * 200.21591 * 10 9 5 30 30 H 1.09000 * 109.47148 * 320.21266 * 10 9 5 31 31 H 1.09007 * 109.47129 * 59.99574 * 12 11 10 32 32 H 1.08996 * 109.47579 * 179.97438 * 12 11 10 33 33 H 1.09000 * 109.47135 * 299.99878 * 12 11 10 34 34 H 1.09001 * 109.47063 * 179.97438 * 15 13 11 35 35 H 1.08995 * 109.47416 * 299.99804 * 15 13 11 36 36 H 1.09008 * 109.47072 * 59.99838 * 15 13 11 37 37 H 0.96996 * 119.99875 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5271 1.2786 -0.0006 6 8 4.3763 0.2300 -0.0006 7 6 5.6376 0.6796 -0.0018 8 6 5.6179 2.0312 -0.0019 9 6 4.2712 2.4248 0.0051 10 6 3.7470 3.8376 0.0126 11 7 3.3563 4.2077 1.3794 12 6 4.5273 4.2648 2.2645 13 6 2.6249 5.4817 1.3912 14 1 3.2595 6.2687 0.9838 15 6 1.3616 5.3524 0.5378 16 6 2.2411 5.8275 2.8068 17 1 2.5135 5.1672 3.6169 18 6 1.5420 6.9869 3.0679 19 7 1.2098 7.7908 2.0814 20 14 1.0667 7.4159 4.8228 21 1 1.5543 6.3555 5.7409 22 1 1.6789 8.7159 5.1977 23 1 -0.4113 7.5170 4.9246 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 6.5247 0.0636 -0.0017 28 1 6.4774 2.6852 -0.0024 29 1 4.5246 4.5155 -0.3393 30 1 2.8800 3.9070 -0.6445 31 1 5.2308 5.0078 1.8887 32 1 4.2098 4.5413 3.2698 33 1 5.0104 3.2881 2.2914 34 1 0.8187 6.2975 0.5468 35 1 1.6388 5.1020 -0.4861 36 1 0.7269 4.5653 0.9452 37 1 0.7177 8.6062 2.2651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161816801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:11 Heat of formation + Delta-G solvation = -50.501885 kcal Electronic energy + Delta-G solvation = -21074.959070 eV Core-core repulsion = 17820.232369 eV Total energy + Delta-G solvation = -3254.726700 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.60320 -39.83399 -37.15584 -36.10588 -33.61209 -32.22615 -30.38687 -28.98033 -27.89323 -26.79862 -24.63611 -23.67042 -22.67002 -21.35611 -20.00481 -19.14000 -17.96851 -16.71747 -16.56271 -16.22878 -15.77067 -15.57048 -15.05311 -14.19389 -13.82849 -13.72843 -13.37797 -12.98875 -12.95664 -12.81182 -12.23581 -12.02373 -11.87928 -11.63172 -11.10385 -10.97096 -10.64797 -10.61762 -10.55360 -10.34327 -9.94003 -9.89703 -9.77241 -9.61755 -8.78919 -8.54146 -8.32883 -7.07657 -5.94027 -3.97743 1.07920 2.40190 2.51370 3.17310 3.23775 3.33302 3.40855 3.45638 4.46689 4.75511 4.89273 5.08282 5.20818 5.28681 5.31138 5.39152 5.58578 5.64621 5.70488 5.91019 6.15842 6.25324 6.29341 6.42892 6.45999 6.53040 6.83608 6.96876 7.07110 7.27271 7.30984 7.65911 7.84436 7.90336 8.00724 8.35469 8.42466 8.68481 9.08634 9.66312 11.12769 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.005996 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.721301 B = 4668.666083 C = 5384.806486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.541 3.459 4 O -0.445 6.445 5 C -0.057 4.057 6 O -0.158 6.158 7 C -0.005 4.005 8 C -0.222 4.222 9 C -0.051 4.051 10 C 0.104 3.896 11 N -0.522 5.522 12 C 0.035 3.965 13 C 0.215 3.785 14 H -0.004 1.004 15 C -0.125 4.125 16 C -0.499 4.499 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.209 0.791 28 H 0.155 0.845 29 H 0.033 0.967 30 H 0.098 0.902 31 H 0.009 0.991 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.007 0.993 36 H 0.040 0.960 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -14.540 -5.770 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.278 6.278 3 C 0.384 3.616 4 O -0.330 6.330 5 C -0.107 4.107 6 O -0.053 6.053 7 C -0.075 4.075 8 C -0.241 4.241 9 C -0.054 4.054 10 C -0.023 4.023 11 N -0.247 5.247 12 C -0.113 4.113 13 C 0.109 3.891 14 H 0.013 0.987 15 C -0.183 4.183 16 C -0.538 4.538 17 H 0.081 0.919 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.117 0.883 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.173 0.827 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.937 -14.696 -5.614 16.488 hybrid contribution 0.352 1.057 0.669 1.299 sum 5.289 -13.639 -4.945 15.442 Atomic orbital electron populations 1.23260 0.75883 1.03364 1.03014 1.86610 1.23571 1.32563 1.85041 1.19137 0.85487 0.82189 0.74803 1.91083 1.63607 1.35001 1.43295 1.20496 0.87862 0.85434 1.16948 1.84103 1.15746 1.34749 1.70733 1.24322 0.85421 0.95118 1.02650 1.21775 0.97374 0.95209 1.09747 1.20785 0.91965 0.96102 0.96506 1.20724 0.99336 0.87795 0.94489 1.62129 1.21669 1.36200 1.04729 1.22262 0.91784 0.97922 0.99355 1.19254 0.90828 0.82650 0.96359 0.98674 1.21758 0.99548 1.02177 0.94790 1.21189 1.35010 1.05325 0.92232 0.91926 1.24923 0.95970 0.96320 0.97067 1.69918 1.40087 1.12671 1.30598 0.86488 0.78183 0.78080 0.84926 1.19825 1.21210 1.21072 0.88330 0.91421 0.91809 0.77407 0.82702 0.94923 0.88384 0.97228 0.90492 0.94037 0.90222 0.97440 0.94057 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.52 16 2 O -0.36 -5.50 10.58 -42.46 -0.45 -5.95 16 3 C 0.54 9.63 7.93 34.05 0.27 9.90 16 4 O -0.44 -9.08 14.16 -19.36 -0.27 -9.35 16 5 C -0.06 -0.97 7.18 -36.84 -0.26 -1.23 16 6 O -0.16 -2.29 10.67 4.75 0.05 -2.24 16 7 C -0.01 -0.06 12.08 29.64 0.36 0.30 16 8 C -0.22 -2.91 10.23 -39.90 -0.41 -3.32 16 9 C -0.05 -0.87 4.76 -104.42 -0.50 -1.36 16 10 C 0.10 2.06 4.43 -4.98 -0.02 2.04 16 11 N -0.52 -11.91 4.61 -237.73 -1.10 -13.01 16 12 C 0.04 0.73 9.09 60.06 0.55 1.28 16 13 C 0.21 5.66 2.06 -68.86 -0.14 5.52 16 14 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 15 C -0.12 -3.25 8.57 37.16 0.32 -2.93 16 16 C -0.50 -14.10 7.88 -34.44 -0.27 -14.37 16 17 H 0.06 1.77 6.41 -52.49 -0.34 1.44 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -26.11 11.32 55.43 0.63 -25.48 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.10 2.06 4.69 -51.93 -0.24 1.82 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 1.70 6.10 -51.93 -0.32 1.38 16 33 H 0.04 0.76 6.80 -51.93 -0.35 0.40 16 34 H 0.08 2.24 6.07 -51.93 -0.31 1.93 16 35 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 36 H 0.04 1.10 7.71 -51.92 -0.40 0.70 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -32.47 309.49 -5.44 -37.91 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.80 Total: -2.24 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 0.86 Total: -1.12 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.47 Total: -38.49 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.67 Total: -17.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.47 -5.44 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161816801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.595 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds