Wall clock time and date at job start Mon Mar 30 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00431 * 2 1 4 4 H 1.09008 * 109.47030 * 330.00416 * 3 2 1 5 5 C 1.53001 * 109.47029 * 89.99899 * 3 2 1 6 6 C 1.50692 * 109.47505 * 210.00497 * 3 2 1 7 7 O 1.21282 * 120.00076 * 344.89582 * 6 3 2 8 8 N 1.34778 * 120.00498 * 164.90293 * 6 3 2 9 9 C 1.46504 * 119.99829 * 4.57630 * 8 6 3 10 10 C 1.50702 * 109.47139 * 95.38448 * 9 8 6 11 11 H 1.08000 * 119.99815 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00204 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99880 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47173 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47197 * 120.00064 * 14 12 10 17 17 H 1.48499 * 109.46885 * 239.99843 * 14 12 10 18 18 C 1.46499 * 120.00329 * 184.58075 * 8 6 3 19 19 C 1.50695 * 109.47047 * 89.99648 * 18 8 6 20 20 C 1.34514 * 125.79004 * 90.00161 * 19 18 8 21 21 C 1.41380 * 106.84362 * 179.97438 * 20 19 18 22 22 C 1.34512 * 106.83935 * 359.97438 * 21 20 19 23 23 O 1.34299 * 125.79235 * 269.69301 * 19 18 8 24 24 H 1.09001 * 109.46918 * 299.99834 * 1 2 3 25 25 H 1.08999 * 109.46989 * 60.00001 * 1 2 3 26 26 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46852 * 291.43384 * 5 3 2 28 28 H 1.08993 * 109.46811 * 51.43449 * 5 3 2 29 29 H 1.09007 * 109.47120 * 171.43660 * 5 3 2 30 30 H 1.08994 * 109.47196 * 215.38856 * 9 8 6 31 31 H 1.09000 * 109.46768 * 335.39294 * 9 8 6 32 32 H 0.97002 * 120.00151 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46970 * 209.99751 * 18 8 6 34 34 H 1.08992 * 109.46816 * 329.99533 * 18 8 6 35 35 H 1.08004 * 126.57809 * 359.96146 * 20 19 18 36 36 H 1.08005 * 126.58269 * 179.97438 * 21 20 19 37 37 H 1.08003 * 125.79140 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3386 1.2638 -0.7105 7 8 3.8767 0.1990 -0.9284 8 7 3.9288 2.4100 -1.1036 9 6 3.3299 3.7001 -0.7527 10 6 3.9756 4.2291 0.5020 11 1 4.7546 3.6613 0.9891 12 6 3.5720 5.4379 1.0282 13 7 2.6232 6.1291 0.4354 14 14 4.3730 6.0939 2.5830 15 1 5.4046 5.1339 3.0513 16 1 5.0094 7.4047 2.2969 17 1 3.3412 6.2643 3.6373 18 6 5.1692 2.3657 -1.8819 19 6 4.8388 2.3270 -3.3517 20 6 4.6847 3.3972 -4.1518 21 6 4.3844 2.9040 -5.4423 22 6 4.3736 1.5619 -5.3538 23 8 4.6541 1.2179 -4.0862 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.2491 1.9476 1.9102 28 1 2.7553 1.0033 1.9985 29 1 2.7966 2.6949 1.4464 30 1 3.4862 4.4069 -1.5676 31 1 2.2608 3.5705 -0.5841 32 1 2.3389 6.9794 0.8057 33 1 5.7650 3.2528 -1.6666 34 1 5.7351 1.4739 -1.6130 35 1 4.7731 4.4343 -3.8636 36 1 4.1993 3.4921 -6.3291 37 1 4.1767 0.8769 -6.1653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168658866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:54 Heat of formation + Delta-G solvation = -62.179000 kcal Electronic energy + Delta-G solvation = -21086.739223 eV Core-core repulsion = 17831.506165 eV Total energy + Delta-G solvation = -3255.233058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17775 -39.43037 -37.12363 -35.20767 -32.95084 -32.52704 -31.44370 -29.72394 -27.43283 -26.40990 -25.75875 -23.25210 -22.67294 -21.34362 -20.26886 -18.68375 -17.24122 -16.73948 -16.47651 -16.17334 -15.74519 -15.05196 -14.75101 -14.62031 -14.44390 -13.92025 -13.42635 -12.82656 -12.56154 -12.48198 -12.44240 -12.27455 -12.11621 -11.73861 -11.49846 -11.30881 -11.17298 -10.96014 -10.80445 -10.59456 -10.21983 -9.87544 -9.58200 -9.45614 -8.91870 -8.64467 -8.15937 -7.89887 -6.29481 -4.36329 2.02221 2.89337 3.15800 3.19885 3.25722 3.29466 3.49905 3.63368 4.23211 4.52292 5.02749 5.06625 5.22231 5.35121 5.38161 5.47020 5.53777 5.63987 5.76892 5.79999 5.84724 6.06670 6.11503 6.27691 6.32609 6.41801 6.43283 6.60775 6.83695 7.02414 7.10972 7.33202 7.52217 7.53416 7.65261 7.92627 8.20371 8.68436 8.93042 9.30305 10.76715 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.008026 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.930523 B = 3487.843352 C = 4949.897285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.188 4.188 6 C 0.521 3.479 7 O -0.546 6.546 8 N -0.593 5.593 9 C 0.233 3.767 10 C -0.540 4.540 11 H 0.067 0.933 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.895 3.105 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.197 3.803 19 C -0.016 4.016 20 C -0.202 4.202 21 C -0.217 4.217 22 C -0.052 4.052 23 O -0.168 6.168 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -4.400 -5.597 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.245 4.245 6 C 0.309 3.691 7 O -0.423 6.423 8 N -0.325 5.325 9 C 0.113 3.887 10 C -0.578 4.578 11 H 0.085 0.915 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.722 3.278 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.073 3.927 19 C -0.068 4.068 20 C -0.222 4.222 21 C -0.236 4.236 22 C -0.121 4.121 23 O -0.063 6.063 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.695 -5.246 -5.560 7.676 hybrid contribution -0.108 1.087 0.551 1.223 sum -0.803 -4.160 -5.009 6.560 Atomic orbital electron populations 1.22777 0.81570 1.02288 0.99912 1.87974 1.18908 1.26825 1.95100 1.21912 0.93347 0.85003 0.97891 0.89977 1.22604 1.03313 1.05256 0.93366 1.20305 0.86692 0.83725 0.78422 1.90619 1.65234 1.29948 1.56538 1.48198 1.24612 1.08124 1.51589 1.19584 0.94273 0.78383 0.96432 1.21475 1.21638 1.04940 1.09760 0.91491 1.24950 0.94811 0.96319 0.97532 1.69930 1.28255 1.14351 1.39727 0.86482 0.79529 0.79045 0.82767 1.19437 1.20769 1.20728 1.19678 0.87653 1.04758 0.80589 1.23260 1.04685 0.83642 0.95169 1.21679 1.07629 0.99896 0.92996 1.21789 1.08409 0.94541 0.98865 1.23964 1.06208 0.96437 0.85474 1.84108 1.67888 1.34923 1.19385 0.94002 0.94283 0.89848 0.92673 0.92471 0.85847 0.94372 0.94101 0.92397 0.86744 0.89130 0.83284 0.83871 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.82 101.05 1.09 1.54 16 2 O -0.37 -7.20 9.93 -54.67 -0.54 -7.74 16 3 C 0.08 1.57 2.30 -27.89 -0.06 1.51 16 4 H 0.08 1.57 6.40 -51.92 -0.33 1.24 16 5 C -0.19 -3.61 9.27 37.16 0.34 -3.26 16 6 C 0.52 11.57 6.98 -10.99 -0.08 11.49 16 7 O -0.55 -13.48 16.12 -13.89 -0.22 -13.70 16 8 N -0.59 -12.50 2.44 -176.44 -0.43 -12.93 16 9 C 0.23 5.25 4.68 -5.19 -0.02 5.22 16 10 C -0.54 -12.97 6.76 -34.44 -0.23 -13.20 16 11 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -22.95 13.29 55.43 0.74 -22.22 16 14 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 C 0.20 3.71 5.99 -5.20 -0.03 3.68 16 19 C -0.02 -0.29 6.90 -35.63 -0.25 -0.54 16 20 C -0.20 -3.40 10.81 -39.70 -0.43 -3.82 16 21 C -0.22 -3.18 10.91 -39.70 -0.43 -3.61 16 22 C -0.05 -0.77 12.09 29.42 0.36 -0.41 16 23 O -0.17 -3.10 10.65 5.72 0.06 -3.04 16 24 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.12 2.64 4.36 -51.92 -0.23 2.41 16 30 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.04 0.95 5.68 -51.93 -0.30 0.66 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.11 1.98 8.07 -51.92 -0.42 1.56 16 34 H 0.09 1.72 7.36 -51.93 -0.38 1.34 16 35 H 0.15 2.38 8.06 -52.48 -0.42 1.96 16 36 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.20 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -29.75 317.10 -5.48 -35.23 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.00 Total: 5.04 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 0.16 Total: 0.18 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.31 Total: -35.15 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.71 Total: -24.49 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.75 -5.48 -35.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168658866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.951 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds