Wall clock time and date at job start Mon Mar 30 2020 00:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00431 * 2 1 4 4 H 1.09008 * 109.47030 * 330.00416 * 3 2 1 5 5 C 1.53001 * 109.47029 * 89.99899 * 3 2 1 6 6 C 1.50692 * 109.47505 * 210.00497 * 3 2 1 7 7 O 1.21282 * 120.00076 * 344.89582 * 6 3 2 8 8 N 1.34778 * 120.00498 * 164.90293 * 6 3 2 9 9 C 1.46504 * 119.99829 * 4.57630 * 8 6 3 10 10 C 1.50702 * 109.47139 * 95.38448 * 9 8 6 11 11 H 1.08000 * 119.99815 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00204 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99880 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47173 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47197 * 120.00064 * 14 12 10 17 17 H 1.48499 * 109.46885 * 239.99843 * 14 12 10 18 18 C 1.46499 * 120.00329 * 184.58075 * 8 6 3 19 19 C 1.50695 * 109.47047 * 89.99648 * 18 8 6 20 20 C 1.34514 * 125.79004 * 90.00161 * 19 18 8 21 21 C 1.41380 * 106.84362 * 179.97438 * 20 19 18 22 22 C 1.34512 * 106.83935 * 359.97438 * 21 20 19 23 23 O 1.34299 * 125.79235 * 269.69301 * 19 18 8 24 24 H 1.09001 * 109.46918 * 299.99834 * 1 2 3 25 25 H 1.08999 * 109.46989 * 60.00001 * 1 2 3 26 26 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46852 * 291.43384 * 5 3 2 28 28 H 1.08993 * 109.46811 * 51.43449 * 5 3 2 29 29 H 1.09007 * 109.47120 * 171.43660 * 5 3 2 30 30 H 1.08994 * 109.47196 * 215.38856 * 9 8 6 31 31 H 1.09000 * 109.46768 * 335.39294 * 9 8 6 32 32 H 0.97002 * 120.00151 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46970 * 209.99751 * 18 8 6 34 34 H 1.08992 * 109.46816 * 329.99533 * 18 8 6 35 35 H 1.08004 * 126.57809 * 359.96146 * 20 19 18 36 36 H 1.08005 * 126.58269 * 179.97438 * 21 20 19 37 37 H 1.08003 * 125.79140 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3386 1.2638 -0.7105 7 8 3.8767 0.1990 -0.9284 8 7 3.9288 2.4100 -1.1036 9 6 3.3299 3.7001 -0.7527 10 6 3.9756 4.2291 0.5020 11 1 4.7546 3.6613 0.9891 12 6 3.5720 5.4379 1.0282 13 7 2.6232 6.1291 0.4354 14 14 4.3730 6.0939 2.5830 15 1 5.4046 5.1339 3.0513 16 1 5.0094 7.4047 2.2969 17 1 3.3412 6.2643 3.6373 18 6 5.1692 2.3657 -1.8819 19 6 4.8388 2.3270 -3.3517 20 6 4.6847 3.3972 -4.1518 21 6 4.3844 2.9040 -5.4423 22 6 4.3736 1.5619 -5.3538 23 8 4.6541 1.2179 -4.0862 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.2491 1.9476 1.9102 28 1 2.7553 1.0033 1.9985 29 1 2.7966 2.6949 1.4464 30 1 3.4862 4.4069 -1.5676 31 1 2.2608 3.5705 -0.5841 32 1 2.3389 6.9794 0.8057 33 1 5.7650 3.2528 -1.6666 34 1 5.7351 1.4739 -1.6130 35 1 4.7731 4.4343 -3.8636 36 1 4.1993 3.4921 -6.3291 37 1 4.1767 0.8769 -6.1653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168658866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:54 Heat of formation + Delta-G solvation = -79.497927 kcal Electronic energy + Delta-G solvation = -21087.490228 eV Core-core repulsion = 17831.506165 eV Total energy + Delta-G solvation = -3255.984063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.46829 -41.09721 -38.60287 -36.98035 -34.72270 -33.89083 -32.95535 -31.16237 -29.22667 -27.66294 -27.20543 -25.04741 -24.24538 -22.61296 -21.59037 -20.29685 -18.81669 -18.37126 -18.01995 -17.81986 -17.15735 -16.56199 -16.34814 -16.23294 -15.82852 -15.39748 -14.91502 -14.34387 -14.27629 -13.98856 -13.70099 -13.64299 -13.55649 -13.34848 -13.04163 -12.90438 -12.68421 -12.64332 -12.50578 -12.06371 -11.98571 -11.70838 -10.98787 -10.83575 -10.62204 -10.44451 -9.69386 -9.41187 -8.19484 -6.31029 0.71735 1.43617 1.48481 1.54852 1.58513 1.67410 2.06897 2.24290 2.43269 3.02406 3.13261 3.61588 3.83393 3.93093 4.13988 4.16365 4.18224 4.37287 4.50255 4.52557 4.57602 4.77603 4.80274 4.85487 4.89558 4.92966 5.03631 5.19011 5.19762 5.49045 5.58421 5.64614 5.75503 6.04282 6.10058 6.24611 6.47503 6.78979 7.19367 7.39044 8.86621 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.008026 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.930523 B = 3487.843352 C = 4949.897285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.084 3.916 4 H 0.088 0.912 5 C -0.180 4.180 6 C 0.513 3.487 7 O -0.577 6.577 8 N -0.590 5.590 9 C 0.249 3.751 10 C -0.539 4.539 11 H 0.060 0.940 12 C 0.031 3.969 13 N -0.913 5.913 14 Si 0.950 3.050 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.279 1.279 18 C 0.195 3.805 19 C -0.047 4.047 20 C -0.202 4.202 21 C -0.222 4.222 22 C -0.045 4.045 23 O -0.195 6.195 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -4.309 -6.083 7.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.023 3.977 4 H 0.105 0.895 5 C -0.237 4.237 6 C 0.301 3.699 7 O -0.458 6.458 8 N -0.322 5.322 9 C 0.129 3.871 10 C -0.577 4.577 11 H 0.078 0.922 12 C -0.171 4.171 13 N -0.552 5.552 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.204 1.204 18 C 0.072 3.928 19 C -0.098 4.098 20 C -0.222 4.222 21 C -0.241 4.241 22 C -0.112 4.112 23 O -0.091 6.091 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.264 -5.143 -6.051 8.041 hybrid contribution 0.039 1.016 0.606 1.184 sum -1.225 -4.126 -5.445 6.941 Atomic orbital electron populations 1.23086 0.78937 1.04309 1.01028 1.87942 1.21804 1.26334 1.95244 1.21831 0.92294 0.85680 0.97888 0.89480 1.22481 1.04147 1.03916 0.93167 1.20817 0.87485 0.83385 0.78196 1.90587 1.66313 1.30885 1.57998 1.48220 1.25070 1.07423 1.51474 1.19287 0.93816 0.78566 0.95462 1.21550 1.21240 1.04881 1.10026 0.92215 1.25532 0.95200 0.96525 0.99826 1.70003 1.29376 1.14782 1.41020 0.85616 0.78665 0.78273 0.79834 1.19419 1.20661 1.20422 1.19720 0.86839 1.04777 0.81430 1.23052 1.07447 0.84328 0.94984 1.21909 1.06533 0.99688 0.94037 1.22156 1.08082 0.94900 0.98916 1.24889 1.03971 0.97550 0.84817 1.84085 1.68617 1.35384 1.21032 0.92534 0.93471 0.87467 0.90443 0.92648 0.87972 0.95604 0.94799 0.92247 0.85846 0.89912 0.83015 0.80759 0.74524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.82 113.37 1.23 1.82 16 2 O -0.39 -15.04 9.93 -130.39 -1.29 -16.33 16 3 C 0.08 3.31 2.30 29.85 0.07 3.38 16 4 H 0.09 3.31 6.40 -2.38 -0.02 3.29 16 5 C -0.18 -6.78 9.27 71.98 0.67 -6.12 16 6 C 0.51 23.08 6.98 87.65 0.61 23.70 16 7 O -0.58 -29.11 16.12 15.55 0.25 -28.86 16 8 N -0.59 -25.33 2.44 -830.52 -2.03 -27.36 16 9 C 0.25 11.33 4.68 85.63 0.40 11.73 16 10 C -0.54 -25.94 6.76 25.60 0.17 -25.77 16 11 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 12 C 0.03 1.50 5.46 84.65 0.46 1.96 16 13 N -0.91 -47.10 13.29 21.45 0.28 -46.81 16 14 Si 0.95 39.46 29.54 68.60 2.03 41.48 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 18 C 0.20 7.55 5.99 85.63 0.51 8.06 16 19 C -0.05 -1.74 6.90 24.83 0.17 -1.57 16 20 C -0.20 -6.64 10.81 22.19 0.24 -6.40 16 21 C -0.22 -6.01 10.91 22.19 0.24 -5.76 16 22 C -0.05 -1.22 12.09 66.97 0.81 -0.41 16 23 O -0.19 -7.12 10.65 -2.45 -0.03 -7.15 16 24 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 25 H 0.05 1.17 8.08 -2.39 -0.02 1.15 16 26 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.08 2.52 8.09 -2.38 -0.02 2.50 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 4.35 4.36 -2.38 -0.01 4.34 16 30 H 0.03 1.24 8.11 -2.39 -0.02 1.22 16 31 H 0.03 1.60 5.68 -2.39 -0.01 1.58 16 32 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 33 H 0.12 4.39 8.07 -2.38 -0.02 4.37 16 34 H 0.08 3.28 7.36 -2.39 -0.02 3.26 16 35 H 0.15 4.80 8.06 -2.91 -0.02 4.77 16 36 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.24 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -63.29 317.10 5.87 -57.42 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.06 Total: 22.98 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.59 Total: 4.62 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.74 Total: -74.17 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -1.07 Total: -52.34 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -63.29 5.87 -57.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168658866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.079 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds