Wall clock time and date at job start Mon Mar 30 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00001 * 2 1 4 4 C 1.50702 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.35135 * 125.61301 * 89.99298 * 4 3 2 6 6 C 1.40362 * 107.10939 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.71195 * 0.02562 * 6 5 4 8 8 C 1.46658 * 125.98797 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00161 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99639 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72443 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 O 1.33922 * 125.61589 * 270.32523 * 4 3 2 23 23 H 1.08996 * 109.46872 * 60.00408 * 1 2 3 24 24 H 1.08999 * 109.46684 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47144 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.47121 * 59.99254 * 3 2 1 27 27 H 1.09002 * 109.47000 * 299.99696 * 3 2 1 28 28 H 1.07993 * 126.44513 * 0.03823 * 5 4 3 29 29 H 1.08007 * 126.64372 * 179.97438 * 6 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 32 32 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 33 33 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 34 34 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 35 35 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 36 36 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 37 37 H 0.96997 * 120.00401 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2975 1.1241 -1.0976 6 6 5.6242 1.0186 -0.6516 7 6 5.5810 1.0215 0.7131 8 6 6.7360 0.9289 1.6121 9 8 7.8592 0.8390 1.1524 10 7 6.5535 0.9434 2.9474 11 6 7.7068 0.8449 3.8454 12 6 7.2266 0.8775 5.2977 13 6 8.4311 0.7739 6.2355 14 6 7.9582 0.8067 7.6660 15 1 6.9040 0.8924 7.8844 16 6 8.8713 0.7274 8.6960 17 7 8.4586 0.7555 9.9444 18 14 10.6948 0.5798 8.3183 19 1 11.2921 1.9361 8.2245 20 1 11.3648 -0.1823 9.4025 21 1 10.8769 -0.1317 7.0276 22 8 4.2891 1.1190 1.0897 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.9663 1.1506 -2.1252 29 1 6.5079 0.9479 -1.2685 30 1 5.6582 1.0147 3.3138 31 1 8.2343 -0.0905 3.6581 32 1 8.3796 1.6835 3.6662 33 1 6.6992 1.8128 5.4850 34 1 6.5539 0.0387 5.4770 35 1 8.9582 -0.1615 6.0481 36 1 9.1042 1.6125 6.0565 37 1 9.1009 0.6993 10.6690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171594069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:53 Heat of formation + Delta-G solvation = -77.033134 kcal Electronic energy + Delta-G solvation = -19117.763439 eV Core-core repulsion = 15861.886257 eV Total energy + Delta-G solvation = -3255.877182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.95033 -39.41150 -38.28358 -35.66481 -33.60275 -33.19084 -31.80173 -31.23304 -28.20314 -27.03710 -25.84309 -23.37091 -22.00160 -21.77874 -20.69479 -20.04986 -18.32997 -17.25882 -16.81930 -16.53081 -16.23245 -16.20444 -15.70378 -15.22270 -14.49663 -14.19180 -13.95400 -13.89520 -13.25331 -13.22985 -13.11349 -12.70846 -12.33900 -12.07017 -11.95736 -11.90818 -11.11348 -10.90775 -10.50141 -10.29044 -10.26021 -10.04182 -9.84653 -9.69066 -9.23503 -9.11645 -8.77221 -8.55737 -6.06416 -4.05301 0.78419 1.96760 2.31706 3.12900 3.18064 3.31398 3.39011 3.43163 3.54494 4.27907 4.44331 4.55538 4.61390 4.72959 4.83879 4.87993 4.94536 5.23811 5.27574 5.37435 5.47673 5.51365 5.61562 5.63785 5.97563 6.07927 6.22890 6.41681 6.53439 6.54405 6.68979 6.75914 7.21602 7.35105 7.49791 7.75566 8.08087 8.50093 8.97440 9.55661 11.06846 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.003079 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.072146 B = 9090.934570 C =10008.266078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.140 3.860 4 C 0.007 3.993 5 C -0.192 4.192 6 C -0.128 4.128 7 C -0.059 4.059 8 C 0.596 3.404 9 O -0.523 6.523 10 N -0.712 5.712 11 C 0.112 3.888 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 O -0.155 6.155 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.405 0.595 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.015 0.985 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 1.617 -23.287 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.064 3.936 4 C -0.046 4.046 5 C -0.212 4.212 6 C -0.148 4.148 7 C -0.112 4.112 8 C 0.382 3.618 9 O -0.401 6.401 10 N -0.361 5.361 11 C -0.010 4.010 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 O -0.050 6.050 23 H 0.063 0.937 24 H 0.109 0.891 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.175 0.825 29 H 0.181 0.819 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.913 1.384 -23.069 26.976 hybrid contribution 0.337 0.175 -0.010 0.380 sum -13.576 1.559 -23.080 26.822 Atomic orbital electron populations 1.22819 0.79893 1.03454 1.00371 1.87998 1.20402 1.26486 1.95527 1.20730 0.84078 0.86061 1.02759 1.22204 0.92793 1.05174 0.84381 1.21615 0.92411 1.07421 0.99716 1.21962 0.98583 1.01316 0.92974 1.22308 0.82009 1.12003 0.94881 1.16578 0.85820 0.77592 0.81856 1.90883 1.22078 1.50918 1.76216 1.46116 1.12045 1.72710 1.05278 1.21781 0.87207 1.02274 0.89733 1.21726 1.00766 1.01952 0.90778 1.19506 0.93462 0.96736 0.95181 1.21094 0.95654 1.50738 0.88550 0.90989 1.25029 0.99035 0.94481 0.94938 1.69911 1.34723 1.50874 0.98696 0.86772 0.85523 0.78599 0.78383 1.20237 1.21365 1.18861 1.84011 1.16321 1.69930 1.34758 0.93654 0.89057 0.93502 0.90904 0.89540 0.82452 0.81942 0.75979 0.91260 0.91259 0.91968 0.91928 0.96218 0.96668 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.47 10.69 -35.23 -0.38 -3.84 16 3 C 0.14 1.02 6.46 36.01 0.23 1.26 16 4 C 0.01 0.07 6.94 -35.41 -0.25 -0.18 16 5 C -0.19 -1.87 10.77 -39.89 -0.43 -2.30 16 6 C -0.13 -1.50 10.62 -39.39 -0.42 -1.92 16 7 C -0.06 -0.80 7.13 -36.80 -0.26 -1.06 16 8 C 0.60 9.33 7.79 -12.86 -0.10 9.23 16 9 O -0.52 -9.64 16.86 5.20 0.09 -9.56 16 10 N -0.71 -10.55 5.55 -61.62 -0.34 -10.90 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.85 16 12 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 18 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 22 O -0.15 -1.94 10.40 5.02 0.05 -1.89 16 23 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.41 5.23 8.23 -40.82 -0.34 4.90 16 31 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 36 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -33.81 325.21 -5.73 -39.54 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.34 Total: -0.54 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.82 Total: -7.75 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.43 Total: -37.96 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.24 Total: -15.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.81 -5.73 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.489 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds