Wall clock time and date at job start Mon Mar 30 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00001 * 2 1 4 4 C 1.50702 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.35135 * 125.61301 * 89.99298 * 4 3 2 6 6 C 1.40362 * 107.10939 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.71195 * 0.02562 * 6 5 4 8 8 C 1.46658 * 125.98797 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00161 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99639 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72443 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 O 1.33922 * 125.61589 * 270.32523 * 4 3 2 23 23 H 1.08996 * 109.46872 * 60.00408 * 1 2 3 24 24 H 1.08999 * 109.46684 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47144 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.47121 * 59.99254 * 3 2 1 27 27 H 1.09002 * 109.47000 * 299.99696 * 3 2 1 28 28 H 1.07993 * 126.44513 * 0.03823 * 5 4 3 29 29 H 1.08007 * 126.64372 * 179.97438 * 6 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 32 32 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 33 33 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 34 34 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 35 35 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 36 36 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 37 37 H 0.96997 * 120.00401 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2975 1.1241 -1.0976 6 6 5.6242 1.0186 -0.6516 7 6 5.5810 1.0215 0.7131 8 6 6.7360 0.9289 1.6121 9 8 7.8592 0.8390 1.1524 10 7 6.5535 0.9434 2.9474 11 6 7.7068 0.8449 3.8454 12 6 7.2266 0.8775 5.2977 13 6 8.4311 0.7739 6.2355 14 6 7.9582 0.8067 7.6660 15 1 6.9040 0.8924 7.8844 16 6 8.8713 0.7274 8.6960 17 7 8.4586 0.7555 9.9444 18 14 10.6948 0.5798 8.3183 19 1 11.2921 1.9361 8.2245 20 1 11.3648 -0.1823 9.4025 21 1 10.8769 -0.1317 7.0276 22 8 4.2891 1.1190 1.0897 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.9663 1.1506 -2.1252 29 1 6.5079 0.9479 -1.2685 30 1 5.6582 1.0147 3.3138 31 1 8.2343 -0.0905 3.6581 32 1 8.3796 1.6835 3.6662 33 1 6.6992 1.8128 5.4850 34 1 6.5539 0.0387 5.4770 35 1 8.9582 -0.1615 6.0481 36 1 9.1042 1.6125 6.0565 37 1 9.1009 0.6993 10.6690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171594069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:53 Heat of formation + Delta-G solvation = -101.466712 kcal Electronic energy + Delta-G solvation = -19118.822958 eV Core-core repulsion = 15861.886257 eV Total energy + Delta-G solvation = -3256.936701 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.81802 -40.64173 -38.82969 -37.13142 -35.25769 -34.25654 -33.41252 -32.25887 -29.47592 -28.08516 -26.56817 -24.85446 -23.09324 -22.72233 -22.24553 -21.20436 -19.47655 -18.87043 -17.94794 -17.36520 -17.12027 -17.05144 -16.63287 -16.47588 -16.22410 -15.41678 -15.31920 -14.81294 -14.77980 -14.19333 -14.03587 -13.83233 -13.68352 -13.57521 -12.90314 -12.77495 -12.72581 -12.36986 -12.04693 -11.81578 -11.62411 -11.41244 -11.33255 -11.12358 -10.76519 -10.74649 -10.34215 -9.70731 -8.29707 -6.34012 -0.16073 1.15105 1.37473 1.39112 1.44663 1.51095 2.01220 2.08032 2.36543 2.95539 3.06073 3.55036 3.78954 3.85758 4.03107 4.16004 4.19581 4.28326 4.46304 4.50525 4.54949 4.59895 4.72771 4.80239 4.85064 4.86594 4.91140 5.01033 5.21141 5.30737 5.44549 5.53741 5.63784 5.75099 6.08381 6.26709 6.34893 6.74026 6.90188 7.30853 8.86867 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.003079 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.072146 B = 9090.934570 C =10008.266078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.137 3.863 4 C 0.006 3.994 5 C -0.191 4.191 6 C -0.121 4.121 7 C -0.092 4.092 8 C 0.598 3.402 9 O -0.558 6.558 10 N -0.707 5.707 11 C 0.125 3.875 12 C -0.102 4.102 13 C -0.011 4.011 14 C -0.532 4.532 15 H 0.036 0.964 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.949 3.051 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.246 1.246 22 O -0.167 6.167 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.191 0.809 29 H 0.171 0.829 30 H 0.415 0.585 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 1.872 -25.710 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.046 4.046 5 C -0.209 4.209 6 C -0.142 4.142 7 C -0.145 4.145 8 C 0.385 3.615 9 O -0.439 6.439 10 N -0.357 5.357 11 C 0.002 3.998 12 C -0.140 4.140 13 C -0.049 4.049 14 C -0.570 4.570 15 H 0.054 0.946 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.169 1.169 22 O -0.064 6.064 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.139 0.861 28 H 0.208 0.792 29 H 0.188 0.812 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.345 1.643 -25.504 29.308 hybrid contribution 0.262 0.104 0.718 0.771 sum -14.084 1.747 -24.786 28.561 Atomic orbital electron populations 1.22999 0.78122 1.04178 1.01700 1.87938 1.22386 1.27442 1.95832 1.21015 0.81992 0.85932 1.04893 1.23007 0.94214 1.03358 0.84004 1.21990 0.91151 1.06624 1.01170 1.22271 0.99979 0.99535 0.92406 1.21934 0.82070 1.15401 0.95048 1.16775 0.86135 0.76652 0.81912 1.90851 1.23575 1.52662 1.76782 1.45960 1.11986 1.72597 1.05115 1.21479 0.87649 1.02179 0.88541 1.21501 0.98994 1.02174 0.91317 1.19463 0.95271 0.97070 0.93125 1.21465 0.94205 1.49984 0.91368 0.94592 1.26006 1.04467 0.94211 0.94610 1.70060 1.36632 1.52561 0.99960 0.85673 0.78983 0.79202 0.78908 1.19148 1.21072 1.16939 1.83991 1.16054 1.70382 1.35932 0.91639 0.88756 0.92832 0.90016 0.86131 0.79218 0.81181 0.74911 0.91528 0.91275 0.91702 0.91877 0.95833 0.95862 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.61 10.69 -148.98 -1.59 -8.20 16 3 C 0.14 1.64 6.46 71.24 0.46 2.10 16 4 C 0.01 0.12 6.94 24.97 0.17 0.29 16 5 C -0.19 -3.21 10.77 22.07 0.24 -2.97 16 6 C -0.12 -2.67 10.62 22.39 0.24 -2.43 16 7 C -0.09 -2.44 7.13 24.07 0.17 -2.27 16 8 C 0.60 18.57 7.79 86.44 0.67 19.25 16 9 O -0.56 -20.54 16.86 -4.33 -0.07 -20.62 16 10 N -0.71 -20.60 5.55 -467.09 -2.59 -23.19 16 11 C 0.12 4.05 5.67 86.38 0.49 4.54 16 12 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 13 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 14 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 15 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 16 C 0.00 0.22 5.47 84.65 0.46 0.69 16 17 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 18 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 22 O -0.17 -4.03 10.40 -4.96 -0.05 -4.08 16 23 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.41 10.50 8.23 -92.71 -0.76 9.73 16 31 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.31 8.14 -2.38 -0.02 2.30 16 35 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 36 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -73.80 325.21 2.81 -70.99 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.25 Total: 11.92 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.68 Total: -13.61 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.29 Total: -82.77 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.72 Total: -32.90 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -73.80 2.81 -70.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171594069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.475 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds