Wall clock time and date at job start Mon Mar 30 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00193 * 2 1 4 4 O 1.20827 * 120.00116 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47250 * 179.97438 * 5 3 2 7 7 N 1.46901 * 109.47202 * 180.02562 * 6 5 3 8 8 C 1.46899 * 111.00107 * 190.00507 * 7 6 5 9 9 C 1.50702 * 109.47363 * 71.54253 * 8 7 6 10 10 H 1.07998 * 120.00098 * 3.98911 * 9 8 7 11 11 C 1.37879 * 119.99918 * 183.98338 * 9 8 7 12 12 N 1.31515 * 119.99920 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00074 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47268 * 89.99563 * 13 11 9 15 15 H 1.48496 * 109.47397 * 209.99738 * 13 11 9 16 16 H 1.48502 * 109.47255 * 329.99594 * 13 11 9 17 17 C 1.46896 * 111.00316 * 66.04853 * 7 6 5 18 18 C 1.50699 * 109.47227 * 199.57120 * 17 7 6 19 19 C 1.34510 * 125.79439 * 89.99984 * 18 17 7 20 20 C 1.41381 * 106.84627 * 179.97438 * 19 18 17 21 21 C 1.34518 * 106.83606 * 359.97438 * 20 19 18 22 22 O 1.34302 * 125.78406 * 269.69022 * 18 17 7 23 23 H 1.09002 * 109.46785 * 60.00212 * 1 2 3 24 24 H 1.08993 * 109.47365 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46986 * 300.00705 * 1 2 3 26 26 H 1.09004 * 109.47605 * 59.99992 * 5 3 2 27 27 H 1.08999 * 109.47560 * 299.99470 * 5 3 2 28 28 H 1.09001 * 109.46983 * 60.00280 * 6 5 3 29 29 H 1.08997 * 109.47259 * 300.00376 * 6 5 3 30 30 H 1.09003 * 109.47511 * 191.55094 * 8 7 6 31 31 H 1.09006 * 109.46720 * 311.54797 * 8 7 6 32 32 H 0.96994 * 119.99676 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47313 * 79.56176 * 17 7 6 34 34 H 1.09004 * 109.46589 * 319.56801 * 17 7 6 35 35 H 1.07998 * 126.57827 * 0.03019 * 19 18 17 36 36 H 1.08000 * 126.58480 * 179.97438 * 20 19 18 37 37 H 1.08004 * 125.78986 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4672 2.8189 -0.0002 8 6 5.9223 4.1952 0.2373 9 6 5.6625 4.5694 1.6738 10 1 5.2649 3.8359 2.3595 11 6 5.9327 5.8482 2.1128 12 7 5.7065 6.1746 3.3665 13 14 6.6200 7.1172 0.9267 14 1 5.5004 7.8439 0.2758 15 1 7.4697 8.0812 1.6709 16 1 7.4364 6.4352 -0.1095 17 6 6.0221 2.2898 -1.2532 18 6 7.4725 1.9347 -1.0499 19 6 7.9409 0.7404 -0.6457 20 6 9.3494 0.8497 -0.5913 21 6 9.6576 2.1043 -0.9662 22 8 8.5170 2.7555 -1.2473 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.9565 0.7805 -0.8891 27 1 3.9558 0.7810 0.8908 28 1 3.6102 3.2367 0.8893 29 1 3.6108 3.2356 -0.8906 30 1 6.9903 4.2656 0.0309 31 1 5.3798 4.8756 -0.4192 32 1 5.8962 7.0744 3.6752 33 1 5.9389 3.0449 -2.0349 34 1 5.4678 1.3988 -1.5483 35 1 7.3537 -0.1346 -0.4090 36 1 10.0445 0.0747 -0.3040 37 1 10.6535 2.5168 -1.0335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177027832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:33 Heat of formation + Delta-G solvation = -60.316676 kcal Electronic energy + Delta-G solvation = -20298.360019 eV Core-core repulsion = 17043.207718 eV Total energy + Delta-G solvation = -3255.152302 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15177 -40.34445 -37.38140 -36.27603 -32.75657 -32.54044 -31.61639 -30.09551 -27.99491 -27.11966 -25.04361 -23.01703 -21.40918 -20.85897 -20.40587 -19.60594 -17.54291 -17.20019 -16.71327 -16.49852 -16.44195 -15.71502 -14.80464 -14.65057 -14.25442 -13.94287 -13.74513 -13.21500 -12.81703 -12.64537 -12.44905 -12.35502 -12.26901 -12.07723 -11.73418 -11.60476 -11.31613 -10.82016 -10.76469 -10.57055 -10.36497 -10.24850 -9.85789 -9.54126 -9.30324 -8.55272 -8.11668 -7.58251 -6.03340 -4.00576 2.10462 2.34435 2.76853 2.98553 3.30432 3.37740 3.39021 3.41738 4.44357 4.67148 4.94045 5.04002 5.05460 5.11886 5.20500 5.28686 5.32072 5.36417 5.37211 5.49710 5.63156 5.65820 5.80456 6.12200 6.20674 6.26157 6.44484 6.46212 6.54563 6.80450 6.84515 6.91509 7.52355 7.57902 7.73598 7.84543 7.91796 8.63265 9.05451 9.58234 11.09770 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.006943 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.217191 B = 4031.649451 C = 5981.439195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.503 6.503 5 C -0.112 4.112 6 C 0.074 3.926 7 N -0.522 5.522 8 C 0.163 3.837 9 C -0.508 4.508 10 H 0.082 0.918 11 C 0.070 3.930 12 N -0.899 5.899 13 Si 0.871 3.129 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.121 3.879 18 C 0.017 3.983 19 C -0.204 4.204 20 C -0.216 4.216 21 C -0.049 4.049 22 O -0.174 6.174 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.035 0.965 31 H -0.011 1.011 32 H 0.263 0.737 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -13.257 -10.408 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.389 6.389 5 C -0.150 4.150 6 C -0.054 4.054 7 N -0.246 5.246 8 C 0.037 3.963 9 C -0.546 4.546 10 H 0.100 0.900 11 C -0.132 4.132 12 N -0.538 5.538 13 Si 0.698 3.302 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.007 4.007 18 C -0.034 4.034 19 C -0.224 4.224 20 C -0.235 4.235 21 C -0.117 4.117 22 O -0.069 6.069 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.134 0.866 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.007 0.993 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.505 -12.772 -9.989 16.284 hybrid contribution 0.074 1.117 -0.966 1.478 sum -1.432 -11.656 -10.956 16.060 Atomic orbital electron populations 1.23213 0.76819 1.03309 1.02535 1.86512 1.23131 1.33998 1.84505 1.23947 0.92379 0.81097 0.72162 1.90695 1.67276 1.36240 1.44734 1.21516 0.86235 1.01301 1.05981 1.21812 0.87843 0.92226 1.03508 1.61921 1.07115 1.25605 1.29970 1.20264 0.95717 0.82450 0.97882 1.20973 1.43097 0.97272 0.93279 0.90024 1.24866 0.95225 0.98080 0.94983 1.69888 1.48886 1.19987 1.15013 0.86923 0.79644 0.81937 0.81703 1.20271 1.21118 1.19034 1.20612 0.86363 1.00624 0.93135 1.22313 0.89025 0.88963 1.03100 1.21424 0.94420 0.98876 1.07710 1.21735 0.96023 0.97843 1.07899 1.23901 0.89542 0.92713 1.05539 1.84053 1.14486 1.40720 1.67689 0.92106 0.88392 0.91889 0.88290 0.86580 0.87785 0.94704 0.94731 0.99297 0.92673 0.93620 0.88608 0.83798 0.83974 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.65 10.57 -39.25 -0.41 -5.07 16 3 C 0.46 6.87 7.96 36.00 0.29 7.16 16 4 O -0.50 -9.11 15.73 -18.75 -0.29 -9.41 16 5 C -0.11 -1.57 5.78 -27.88 -0.16 -1.73 16 6 C 0.07 1.35 4.10 -3.82 -0.02 1.33 16 7 N -0.52 -10.41 4.37 -237.51 -1.04 -11.45 16 8 C 0.16 3.96 3.62 -4.98 -0.02 3.94 16 9 C -0.51 -14.51 8.94 -34.44 -0.31 -14.81 16 10 H 0.08 2.53 7.92 -52.49 -0.42 2.11 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 13 Si 0.87 21.93 27.39 -169.99 -4.66 17.27 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.27 -6.51 6.66 56.52 0.38 -6.13 16 17 C 0.12 1.97 5.38 -4.98 -0.03 1.94 16 18 C 0.02 0.29 6.23 -35.63 -0.22 0.07 16 19 C -0.20 -3.15 10.81 -39.70 -0.43 -3.57 16 20 C -0.22 -3.07 10.91 -39.70 -0.43 -3.50 16 21 C -0.05 -0.72 12.09 29.42 0.36 -0.37 16 22 O -0.17 -3.16 9.99 5.70 0.06 -3.10 16 23 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.10 1.11 6.25 -51.93 -0.32 0.78 16 27 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.10 2.25 7.11 -51.93 -0.37 1.89 16 29 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.03 0.88 6.14 -51.93 -0.32 0.56 16 31 H -0.01 -0.26 7.27 -51.93 -0.38 -0.64 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.05 0.74 8.00 -51.93 -0.42 0.33 16 34 H 0.10 1.22 5.88 -51.93 -0.31 0.92 16 35 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.20 2.09 8.06 -52.48 -0.42 1.66 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -34.13 316.40 -5.87 -40.00 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.06 Total: 0.22 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.00 Total: -6.17 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.27 Total: -38.51 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.65 Total: -17.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.66 Total: 17.27 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.13 -5.87 -40.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177027832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.314 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds