Wall clock time and date at job start Mon Mar 30 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00193 * 2 1 4 4 O 1.20827 * 120.00116 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00073 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47250 * 179.97438 * 5 3 2 7 7 N 1.46901 * 109.47202 * 180.02562 * 6 5 3 8 8 C 1.46899 * 111.00107 * 190.00507 * 7 6 5 9 9 C 1.50702 * 109.47363 * 71.54253 * 8 7 6 10 10 H 1.07998 * 120.00098 * 3.98911 * 9 8 7 11 11 C 1.37879 * 119.99918 * 183.98338 * 9 8 7 12 12 N 1.31515 * 119.99920 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00074 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47268 * 89.99563 * 13 11 9 15 15 H 1.48496 * 109.47397 * 209.99738 * 13 11 9 16 16 H 1.48502 * 109.47255 * 329.99594 * 13 11 9 17 17 C 1.46896 * 111.00316 * 66.04853 * 7 6 5 18 18 C 1.50699 * 109.47227 * 199.57120 * 17 7 6 19 19 C 1.34510 * 125.79439 * 89.99984 * 18 17 7 20 20 C 1.41381 * 106.84627 * 179.97438 * 19 18 17 21 21 C 1.34518 * 106.83606 * 359.97438 * 20 19 18 22 22 O 1.34302 * 125.78406 * 269.69022 * 18 17 7 23 23 H 1.09002 * 109.46785 * 60.00212 * 1 2 3 24 24 H 1.08993 * 109.47365 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46986 * 300.00705 * 1 2 3 26 26 H 1.09004 * 109.47605 * 59.99992 * 5 3 2 27 27 H 1.08999 * 109.47560 * 299.99470 * 5 3 2 28 28 H 1.09001 * 109.46983 * 60.00280 * 6 5 3 29 29 H 1.08997 * 109.47259 * 300.00376 * 6 5 3 30 30 H 1.09003 * 109.47511 * 191.55094 * 8 7 6 31 31 H 1.09006 * 109.46720 * 311.54797 * 8 7 6 32 32 H 0.96994 * 119.99676 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47313 * 79.56176 * 17 7 6 34 34 H 1.09004 * 109.46589 * 319.56801 * 17 7 6 35 35 H 1.07998 * 126.57827 * 0.03019 * 19 18 17 36 36 H 1.08000 * 126.58480 * 179.97438 * 20 19 18 37 37 H 1.08004 * 125.78986 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4672 2.8189 -0.0002 8 6 5.9223 4.1952 0.2373 9 6 5.6625 4.5694 1.6738 10 1 5.2649 3.8359 2.3595 11 6 5.9327 5.8482 2.1128 12 7 5.7065 6.1746 3.3665 13 14 6.6200 7.1172 0.9267 14 1 5.5004 7.8439 0.2758 15 1 7.4697 8.0812 1.6709 16 1 7.4364 6.4352 -0.1095 17 6 6.0221 2.2898 -1.2532 18 6 7.4725 1.9347 -1.0499 19 6 7.9409 0.7404 -0.6457 20 6 9.3494 0.8497 -0.5913 21 6 9.6576 2.1043 -0.9662 22 8 8.5170 2.7555 -1.2473 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.9565 0.7805 -0.8891 27 1 3.9558 0.7810 0.8908 28 1 3.6102 3.2367 0.8893 29 1 3.6108 3.2356 -0.8906 30 1 6.9903 4.2656 0.0309 31 1 5.3798 4.8756 -0.4192 32 1 5.8962 7.0744 3.6752 33 1 5.9389 3.0449 -2.0349 34 1 5.4678 1.3988 -1.5483 35 1 7.3537 -0.1346 -0.4090 36 1 10.0445 0.0747 -0.3040 37 1 10.6535 2.5168 -1.0335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177027832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:33 Heat of formation + Delta-G solvation = -84.088106 kcal Electronic energy + Delta-G solvation = -20299.390826 eV Core-core repulsion = 17043.207718 eV Total energy + Delta-G solvation = -3256.183108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.33041 -41.50596 -38.85142 -37.47285 -34.81969 -33.80698 -32.93095 -31.59399 -29.40831 -28.35341 -26.35245 -24.69314 -22.65168 -22.33989 -21.59550 -20.94315 -19.09304 -18.69837 -18.17698 -17.60933 -17.60568 -17.02192 -16.49085 -16.10575 -15.66721 -15.37544 -15.09022 -14.61557 -14.35689 -14.05370 -13.88507 -13.57125 -13.48842 -13.21674 -13.13062 -12.97636 -12.73328 -12.65166 -12.28712 -11.88127 -11.86250 -11.75991 -11.57366 -11.45397 -10.80780 -10.67764 -9.33797 -9.13335 -8.30098 -6.32233 0.91479 1.17531 1.30428 1.32030 1.43383 1.71264 1.87102 2.27916 2.31694 3.03668 3.26095 3.72228 3.89615 4.01742 4.13272 4.24364 4.27965 4.34363 4.34947 4.39208 4.49212 4.63013 4.73105 4.76020 4.85832 5.01883 5.02830 5.11907 5.17377 5.32668 5.37628 5.53697 5.77661 5.88519 6.21882 6.38375 6.53624 6.73080 6.74246 7.30629 8.86641 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.006943 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.217191 B = 4031.649451 C = 5981.439195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.543 6.543 5 C -0.101 4.101 6 C 0.079 3.921 7 N -0.531 5.531 8 C 0.175 3.825 9 C -0.511 4.511 10 H 0.041 0.959 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.939 3.061 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.254 1.254 17 C 0.122 3.878 18 C -0.020 4.020 19 C -0.201 4.201 20 C -0.222 4.222 21 C -0.057 4.057 22 O -0.205 6.205 23 H 0.062 0.938 24 H 0.136 0.864 25 H 0.055 0.945 26 H 0.139 0.861 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.027 0.973 31 H -0.013 1.013 32 H 0.266 0.734 33 H 0.046 0.954 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -14.971 -12.343 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.433 6.433 5 C -0.138 4.138 6 C -0.049 4.049 7 N -0.255 5.255 8 C 0.048 3.952 9 C -0.550 4.550 10 H 0.059 0.941 11 C -0.187 4.187 12 N -0.587 5.587 13 Si 0.763 3.237 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.177 1.177 17 C -0.005 4.005 18 C -0.070 4.070 19 C -0.220 4.220 20 C -0.241 4.241 21 C -0.124 4.124 22 O -0.102 6.102 23 H 0.081 0.919 24 H 0.154 0.846 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.005 0.995 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.154 0.846 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.699 -14.536 -11.939 18.823 hybrid contribution -0.209 1.504 -0.312 1.550 sum -0.907 -13.032 -12.250 17.909 Atomic orbital electron populations 1.23547 0.74971 1.05751 1.02339 1.86494 1.24883 1.32431 1.83801 1.24036 0.92632 0.81130 0.71078 1.90689 1.68155 1.37679 1.46813 1.21381 0.85945 0.98288 1.08182 1.21635 0.86877 0.95094 1.01281 1.61765 1.08012 1.22802 1.32945 1.19926 0.95196 0.85198 0.94840 1.21216 1.42131 0.96601 0.95022 0.94098 1.25770 0.95717 1.00493 0.96732 1.70037 1.50634 1.20788 1.17197 0.85830 0.79268 0.79075 0.79536 1.19326 1.20360 1.17739 1.20768 0.86696 1.02006 0.91002 1.22546 0.89216 0.89804 1.05475 1.21837 0.95342 0.98902 1.05967 1.22156 0.96110 0.98445 1.07421 1.24712 0.89995 0.93126 1.04585 1.84022 1.15618 1.41993 1.68532 0.91899 0.84617 0.92616 0.84381 0.85830 0.92412 0.94617 0.95466 0.99506 0.92457 0.93594 0.84629 0.81626 0.81145 0.75557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.45 10.57 -51.39 -0.54 -9.00 16 3 C 0.47 13.45 7.96 71.23 0.57 14.02 16 4 O -0.54 -19.90 15.73 21.96 0.35 -19.55 16 5 C -0.10 -2.64 5.78 29.85 0.17 -2.47 16 6 C 0.08 2.90 4.10 86.30 0.35 3.26 16 7 N -0.53 -21.06 4.37 -905.35 -3.96 -25.02 16 8 C 0.18 8.62 3.62 85.56 0.31 8.93 16 9 C -0.51 -30.30 8.94 25.60 0.23 -30.07 16 10 H 0.04 2.68 7.92 -2.91 -0.02 2.66 16 11 C 0.01 0.62 5.47 84.65 0.46 1.08 16 12 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 13 Si 0.94 45.78 27.39 68.60 1.88 47.66 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.25 -11.77 6.66 99.48 0.66 -11.10 16 17 C 0.12 3.77 5.38 85.56 0.46 4.23 16 18 C -0.02 -0.67 6.23 24.83 0.15 -0.51 16 19 C -0.20 -5.65 10.81 22.19 0.24 -5.41 16 20 C -0.22 -5.70 10.91 22.19 0.24 -5.46 16 21 C -0.06 -1.56 12.09 66.97 0.81 -0.75 16 22 O -0.20 -7.18 9.99 -2.53 -0.03 -7.21 16 23 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 24 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 26 H 0.14 2.54 6.25 -2.39 -0.01 2.53 16 27 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.06 2.65 7.11 -2.39 -0.02 2.63 16 29 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.03 1.39 6.14 -2.39 -0.01 1.37 16 31 H -0.01 -0.63 7.27 -2.38 -0.02 -0.64 16 32 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 33 H 0.05 1.42 8.00 -2.39 -0.02 1.40 16 34 H 0.14 2.97 5.88 -2.39 -0.01 2.95 16 35 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.23 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -77.41 316.40 4.21 -73.20 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.02 Total: 11.59 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 5.20 Total: -11.48 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.66 Total: -85.22 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.22 Total: -35.76 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -77.41 4.21 -73.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177027832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.886 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds